mRNA_S-dermatodea_contig10825.559.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI) HSP 1 Score: 248 bits (634), Expect = 2.220e-68 Identity = 260/578 (44.98%), Postives = 296/578 (51.21%), Query Frame = 1
Query: 49 ALRRNKSIRLLELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYWANHLNLAGGARAGXXXXXXXXXXXXXXXXXEDSGNGRRSGAGNPDARPARPQHAPPPPPHARGAVGARVPNNALLPPQRQEHGHVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESRRARKGSAPPAVLKSCRIVADSSSGGHERVPVHPTGARGGXXXXXXXXXXXXXXXAVIGDKLHRPLVQDLHEIAQLPFSAAELWSLHQYYFSPPVE------PRSPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGVGWLDGFCSASNGRAQEDGDLGGSVVAXXXXXXXXXXXXXPVRDDGVGAGARRCRRSXXLGEXXDDEVDSPRPPSKRYRNSS-------------TNMRIACFPLIQARIRALKSKPDERGVLTILRQLKFLE 1725
A+ RN SIRLLELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALPTLGL+TL++GF++V TAGVAALMQAT NSP FTSLSLSGNALDAE AKAIQ ALAQPRC+L+ L LDHTSLGRASE FIANGVLSNR L L +LTGF LG++FARLGMPPQVA+FSN+QALEQ + AN PP GA+GA A G R G RGG XXXXXXXXXXXXX + + L LV+ LH+IAQLPFSAAELWSLHQ+YFSPP++ RS + XXXXXXX G G+ +G +A + + G + D VGAGARR XX XX T RIACFP ++AR+RALKSKPD+RG+LT+LRQLK L+
Sbjct: 416 AVARNTSIRLLELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALPTLGLETLDVGFSHVGTAGVAALMQATANSPSFTSLSLSGNALDAEAAKAIQAALAQPRCSLRCLYLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQQK---AN------------------------------------------------------PPGVREGALGA---------------------------------------------------------AXXXXXXXXXXXXXXXPGVPRRAVSEDAGCRGGVGXXXXXXXXXXXXXXAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSPSSRSSPTSAASTPSPSTCPSKAGPGRTWAAXXXXXXXXXGGGFPNGLATARDTEGR-----GSNPAGVLGPPGGGSRGCSGDEDAEVGAGARRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQ 874
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.160e-54 Identity = 219/558 (39.25%), Postives = 264/558 (47.31%), Query Frame = 1
Query: 217 ALPTLGLQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYWANHLNLAGGARAGXXXXXXXXXXXXXXXXXE-----------------------DSGNGRRSGAGNPDARPARPQHAPPPPPHARGAVGARVPNNALLPPQRQE--HGHVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESRRARKGSAPPAVLKSCRIVADSSSGGHERVPVHP----------TGARGGXXXXXXXXXXXXXXXAVIGDKLHRPLVQDLHEIAQLPFSAAELWSLHQYYFSPPVEPR-SPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC------GVGWLDGFCSASNGRAQEDGDLGGSVVAXXXXXXXXXXXXXPVRDDGVGAGARRCRRSXXLGEXXDDEVDSPRPPSKRYRNSSTNM-------------RIACFPLIQARIRALKSKPDERGVLTILRQLKFLE 1725
ALPTLGL+TL++GF++V TAGVAALMQA ALAQPRC+L+ L LDHTSLGRASE FIANGVLSNR L L +LTGF LG++FARLGMPPQVA+FSN+QALEQVRLYWANH+N A XXXXXXXXXXXXXXXXX D G+ GAG + G + NNA P +RQ+ G P + + + P + A G HP G +GG A + + L LV+ LH+IAQLPFSAAELWSLHQ+YFSPP++ SP+SXXXXXXXXXXXXXXX XX G G++ G A + ++ G D VGAG RR RRS +G+ D E RIACFP ++AR+RALKSKPD+RG+LT+LRQLK L+
Sbjct: 520 ALPTLGLETLDVGFSHVGTAGVAALMQA---------------------------ALAQPRCSLRCLCLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQVRLYWANHVNQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRDPGDGGSRIGDGAG-------------------KDFTGGAL-NNAHQPQRRQQCMGGGSPTAAVVTEKAIPPHPPSEYRPHHLSRYHQHQGDHQQNANPPGVREAALGAAATGHHGXXXGGRHHPGVSGRAVSADAGCQGGVGSSGGDGTERAA--AAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSPSSXXXXXXXXXXXXXXXCPSNAGPGRTWAAXXXXXXXXXXGGGFVHGSAIARDTEGRDSNPAG-----VPGPPGGGSRGCSGDEDAEVGAGGRRSRRSASMGQEQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQ 1023
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A7S2KCJ2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KCJ2_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.620e-20 Identity = 64/205 (31.22%), Postives = 107/205 (52.20%), Query Frame = 1
Query: 1 MSDNEIGDEGLEGLAHALRRNKSIRL--LELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYW 609
+SDN + D+ L + ++ RN+ + L L L FN++T L ++ L+ L++GFN + G+ ALM++ + +L+LSGN LD +KA+ ALA + +Q+L +DH SL A++ IA G++SN +L L ++GFPLGA LG+P + +++NEQ L+ +R+ W
Sbjct: 291 LSDNGLNDQDLSLFSQSISRNRQLPLETLRLSFNKLTCVGVETLMNAIWGSKTLREIKLDNNQIRDRGAQLAAVVLTSVELEVLDMGFNRLTIVGIKALMKSLAENCSLLTLTLSGNVLDTNASKAVSYALAYNKT-IQKLYVDHCSLSYAAQRHIAAGIVSNSKLALRVMSGFPLGAISVTLGLPGAMENWTNEQVLKFIRVMW 494
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A7S1YYC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YYC7_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.310e-19 Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 235 LQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYW 609
L+ ++LGFN++ + G+ LM+ S LS+SGN +D+E +KA+ ALA R +L+ + LDH + + I G++SN ++L +LTGFPLGAA A LG+PP + +++NEQ L+ + L W
Sbjct: 29 LEKIDLGFNSIGSGGMKTLMKYVSESTCINWLSVSGNPIDSEASKAVAYALAYNR-SLKSMFLDHCFIAHEGQRHITAGIVSNSGISLRNLTGFPLGAAAATLGLPPALENWTNEQLLKFIHLMW 152
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A7S4EEC4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEC4_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.380e-13 Identity = 60/204 (29.41%), Postives = 95/204 (46.57%), Query Frame = 1
Query: 10 NEIGDEGLEGLAHALRRNKSIRL--LELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYWAN 615
N + D L L+ +L +NK+I L L L FN+IT L ++ L+ L++ FN ++T GV A+M++ + L+L G +D +KA+ ALA + +LQR ++D S+G + + I G++SNR L LTGFPL LG+P + N++ L VR W +
Sbjct: 429 NNLNDSDLALLSQSLTQNKNIPLKSLILSFNKITCVGIECLMNAVWGSSTLKEVKLDSNLMEDRGAQLCSVVLSSIRLELLDVSFNRISTIGVKAIMKSLSENDSLKRLALCGVPMDQNASKAVSYALAYNQ-SLQRFNIDSCSVGYSGQRHIVAGIVSNRYTKLHRLTGFPLAPIIMTLGLPQLPEEWGNDRVLSFVRFMWTH 631
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A1Z5K171_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K171_FISSO) HSP 1 Score: 85.1 bits (209), Expect = 1.680e-13 Identity = 64/213 (30.05%), Postives = 104/213 (48.83%), Query Frame = 1
Query: 16 IGDEGLEGLAHALRRNKSIRLLELCF--NRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLQTLELGFN-NVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYWANHLNLAGGARA 645
+GD ++ L+ A+ +NKS+ L +L F N I+ AL ++ ++ L+L FN N++T G+ ALM+ + SL L+G LD +KA+ ALA +LQ L LD+ ++G AS+ I G++SN+R +L +TGF + LG+P ++SN+Q L +R W L +G +A
Sbjct: 333 VGDHEMQLLSQAISQNKSLPLEKLVFSFNEISCQGVESLMNAAWGSKSLRVIRLDNNRIQDRGAQLCAVALTSIQMEVLDLSFNRNISTTGIKALMKNISENNSLRSLGLAGIHLDQNSSKALSYALAY-NMSLQTLYLDNCNVGYASQRHIVAGIVSNQRASLRLVTGFDIAPIAITLGLPRLPETWSNDQVLGFIRYMWQQWLLKSGRGKA 544
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: B7G2T0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T0_PHATC) HSP 1 Score: 83.2 bits (204), Expect = 7.090e-13 Identity = 64/218 (29.36%), Postives = 100/218 (45.87%), Query Frame = 1
Query: 1 MSDNEIGDEGLEGLAHALRRNKSIRLLELC--FNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYWANHLNLAGGARAG 648
+S+N + D+ + ++ AL +NK + L EL FN+IT L ++ LQ+L++G N V +AG+ ALM+ + SL L+G +D +KA+ ALA +LQ + D++ G +++ I G++SN+ L LTGFPL LG+P +SN+Q L RL W AG G
Sbjct: 396 VSNNNLDDQDILLMSQALTQNKRLPLEELVLSFNQITCQGVENLMNSIWGSTTLKKIKLDNNRLRDRGAQLCAVVLTSIPLQSLDIGCNAVTSAGIKALMKNVSENSSLISLGLAGIHIDQNSSKAVSYALAY-NTSLQAVYFDNSHAGYSAQRHIVAGIVSNQSAPLRLLTGFPLAPIAVTLGVPRLPEVWSNDQVLGFFRLMWRQWAIKAGRGNVG 612
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A7S4QPC4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QPC4_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.160e-10 Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 1
Query: 220 LPTLGLQTLELGFNNVATAGVAALMQATVNSPVFTSLSLSGNALDAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYW 609
L ++ L+ L+LGFN + T G+ ALM++ + SL+LSGN +D+ S+G A++ I G++SN +L+L +TGF +GA LG+P + +++NEQ L+ +RL W
Sbjct: 25 LTSVKLEVLDLGFNRITTGGIKALMKSLAENDTLLSLTLSGNPXXXXXXXXXXXXXXXXXX-XXXXXVDNCSVGYAAQRHITAGIVSNSQLSLRVITGFHIGAIAVTLGLPSALENWTNEQVLKFIRLMW 153
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Match: A0A7S4RZB5_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RZB5_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.130e-9 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 352 DAEGAKAIQVALAQPRCALQRLSLDHTSLGRASEVFIANGVLSNRRLTLASLTGFPLGAAFARLGMPPQVASFSNEQALEQVRLYW 609
D+E +KA+ ALA R +L+ + LDH + + I G++SN ++L +LTGFPLGAA A LG+PP + +++NEQ L+ + L W
Sbjct: 501 DSEASKAVAYALAYNR-SLKSMFLDHCFIAHEGQRHITAGIVSNSGISLRNLTGFPLGAAAATLGLPPALENWTNEQLLKFIHLMW 585 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10825.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10825.559.1 >prot_S-dermatodea_contig10825.559.1 ID=prot_S-dermatodea_contig10825.559.1|Name=mRNA_S-dermatodea_contig10825.559.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=598bp MSDNEIGDEGLEGLAHALRRNKSIRLLELCFNRITAAGVEALAKAVWGCTback to top mRNA from alignment at S-dermatodea_contig10825:2062..7778- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10825.559.1 ID=mRNA_S-dermatodea_contig10825.559.1|Name=mRNA_S-dermatodea_contig10825.559.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5717bp|location=Sequence derived from alignment at S-dermatodea_contig10825:2062..7778- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10825:2062..7778- >mRNA_S-dermatodea_contig10825.559.1 ID=mRNA_S-dermatodea_contig10825.559.1|Name=mRNA_S-dermatodea_contig10825.559.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3588bp|location=Sequence derived from alignment at S-dermatodea_contig10825:2062..7778- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |