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Homology
BLAST of mRNA_S-dermatodea_contig10812.552.1 vs. uniprot
Match: D7FW22_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW22_ECTSI) HSP 1 Score: 490 bits (1261), Expect = 8.640e-168 Identity = 270/476 (56.72%), Postives = 323/476 (67.86%), Query Frame = 1
Query: 13 MNATASGVVTLWEFREYFDLPDDGSTTRLFRCFDEDRDNRVGFLEMVVGLWTYCCNCNASLMCLCFDLYDTDHNGQISLTEADFMLKDVFGARWATDEEAKVLHAWLHERDDALLGSPELGVDAWVAFVSENLQIQAPALRTRLILQNKVIGVGFWTFCMRKRATIYRGCRVTMENLISAHVSPAVLEDLAQDRDPSKDHDDSTQFVLRVLRRTGPFPRRRKYRDLGGKKMVLRGLDA----------KFKTLSVRDTYERLTVPAGEDAKWEEPKQPSALQALMASLAAIGERCTPGN---DTAGAIPERYSPAGGLQERAPRANLSSTKNAPPEALALLKARPGIDGAPLGSPAATAXXXXXXXXXXGSTETNQIIANAFFGLKPLP--ASPQGPSLSKGGNR-RNKASRRVAAQTKEVGPPSAPAAGTKAAGGGRAALVRIGKELVLAGDVRRVGTGGAGDGAGGQGKLSARI 1392
MN T +G VTLWEFREYF+LPDD STTRLFRCFDEDRDNR+GFLE+VVG+WTYCCNCNAS++CLCFDL D DHNG+I E +FM+ DVFG W ++EAK +H W HERDDALLG PE+ +DAW AFVS N QIQAPA+ TRL+LQ KV+GVGFWT C+ K TI+ G T+E ++SAHVSP +LE+LAQDR DHDDSTQF LRV+RRTGPFPRRRKYRD+ GKK+ + A KF TL+VR+ +ER+TVPAG+DA WE+PK PS LQALMASL AI ER PG + ++ K APP+ALALLK RPGIDGAPLGSPA + + + IANAF+GLKPLP +P PS + G R R K + R A K V P ++ G++A GGG+ L R GKELV AG+V VG G G GG G LSAR+
Sbjct: 1 MNETGNGTVTLWEFREYFNLPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFNFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDMDAWSAFVSANPQIQAPAVHTRLVLQKKVLGVGFWTHCLPKNMTIFLGRTATVEQILSAHVSPNILEELAQDRRLELDHDDSTQFNLRVIRRTGPFPRRRKYRDMAGKKLRAKAAAAVGAVAADNVKKFATLTVREAFERVTVPAGKDATWEDPKPPSTLQALMASLTAIVERAPPGGAXXXXXXXXXXXXXXXXXXXXXXSKKRKNNKKGAPPDALALLKNRPGIDGAPLGSPAVAPSSPTG-----SAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTA--KKGVSPAASSPEGSRAVGGGKITLSRTGKELVGAGEVGCVGVPG---GEGGTGTLSARL 466
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 102.8 |
| Seed ortholog evalue | 4.3e-19 |
| Seed eggNOG ortholog | 2880.D7FMZ9 |
| EggNOG free text desc. | EF-hand, calcium binding motif |
| EggNOG OGs | 2CXXS@1,2S4MR@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EF-hand domain pair |
| Ec32 ortholog | Ec-01_003060.1 |
| Exons | 5 |
| Model size | 1407 |
| Cds size | 1395 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924175.2697036-UTR-S-dermatodea_contig10812:7266..7278 | 1622924175.2697036-UTR-S-dermatodea_contig10812:7266..7278 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10812 7267..7278 - |
| 1694079069.4207797-UTR-S-dermatodea_contig10812:7266..7278 | 1694079069.4207797-UTR-S-dermatodea_contig10812:7266..7278 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10812 7267..7278 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10812.552.1 >prot_S-dermatodea_contig10812.552.1 ID=prot_S-dermatodea_contig10812.552.1|Name=mRNA_S-dermatodea_contig10812.552.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=465bp
MNATASGVVTLWEFREYFDLPDDGSTTRLFRCFDEDRDNRVGFLEMVVGL
WTYCCNCNASLMCLCFDLYDTDHNGQISLTEADFMLKDVFGARWATDEEA
KVLHAWLHERDDALLGSPELGVDAWVAFVSENLQIQAPALRTRLILQNKV
IGVGFWTFCMRKRATIYRGCRVTMENLISAHVSPAVLEDLAQDRDPSKDH
DDSTQFVLRVLRRTGPFPRRRKYRDLGGKKMVLRGLDAKFKTLSVRDTYE
RLTVPAGEDAKWEEPKQPSALQALMASLAAIGERCTPGNDTAGAIPERYS
PAGGLQERAPRANLSSTKNAPPEALALLKARPGIDGAPLGSPAATATAAA
AATATSGSTETNQIIANAFFGLKPLPASPQGPSLSKGGNRRNKASRRVAA
QTKEVGPPSAPAAGTKAAGGGRAALVRIGKELVLAGDVRRVGTGGAGDGA
GGQGKLSARISKAA* back to topmRNA from alignment at S-dermatodea_contig10812:4118..7278- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10812.552.1 ID=mRNA_S-dermatodea_contig10812.552.1|Name=mRNA_S-dermatodea_contig10812.552.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3161bp|location=Sequence derived from alignment at S-dermatodea_contig10812:4118..7278- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACTCAAAACAGATGAACGCGACAGCAAGTGGCGTAGTGACATTGTGGGA
GTTCCGAGAATACTTTGATCTGCCAGATGATGGCTCCACCACGCGGCTGT
TCCGATGTTTCGACGAAGACCGCGACAACCGTGTGGGATTCTTGGAGATG
GTCGTGGGCCTATGGACCTATTGTGAGTTAGGGCGGAGAGCTGTAACCGC
GTTGTGTACAGCTATTACATTCAATCAATACACACCCTCGGGGGAACCCT
AGCGCTCGGTTCTCCGTTGCGGCATGCTTCTCCTGTCTATAGTGCATCCT
GCCGGTTTACGAAAAGCACGCAGTGGCAACATAAACACTCTGAATGCATT
GATATGTGCCAGTAGAAGGCTAGTTTCGCGCGGGTAGACCACACCGCCTT
CAAGCTACCGCAGCATGAAACAAAAAGAGTCAATTGTGCCAACCGAGAGA
GGCCTGAACCTAGCCCAAAAAACAAAAACCCACGACTGCTCGCAAATAAC
GCATCCTTTACTGCCCTTTTAGTGCAGCAAATAGCATTTATTCGTCGTTT
TTATACGGCCTGCTCGCTGCACACTACCACGCCACACGCAACACGGGAAC
AGGAACACCAAGTAACACCGCAGTGACACAACCCCCCCCCCCCCACCTTC
CCCCCTACTGTTCAGGTTGCAACTGCAATGCTTCCCTCATGTGCCTGTGC
TTTGACCTGTATGACACGGACCACAACGGCCAGATATCTCTGACAGAAGC
CGACTTCATGCTCAAGGATGTCTTCGGTGCTCGGTGGGCGACAGACGAAG
AGGCTAAGGTCTTGCACGCGTGGTTGCACGAGCGGGACGACGCGCTGCTC
GGTTCGCCCGAGCTCGGCGTGGATGCTTGGGTGGCGTTTGTTTCGGAGAA
CCTCCAGATCCAAGCGCCTGCCCTCCGCACACGGTTGATACTGCAAAATA
AGGTGCCAGCACTACTACTGTAGAGCGAACGCCTCGCCTGTGTTTATGCC
GCGGCAGACATCCCATGTATTTGTTTTAGTTGTTGGCCGTTACTCCCGAC
CTCCGCGGTAAGAGCACCTTTAATGGCCGATTCTTCACTGCGACGCTCTC
CCAAGAGACAACGTAGCATTCCGAGATGTATCTTGTTTTCAATGTCCAGA
AATCTAACGCGGAACAAAATATACTTCTCTGAGCGAGCAATACTCCCAAA
GCATCTAGTCAGTGAGGTGCGTGTGTCCCCTGGCCCTTGTTGAACCGGAC
GCTAAGGTCATTGGCGTCGGTTTCTGGACGTTCTGCATGCGGAAGCGCGC
GACTATCTACCGAGGTTGTCGCGTGACGATGGAAAATCTCATCAGCGCCC
ACGTGTCTCCCGCGGTGCTAGAGGACCTCGCGCAAGACAGGGATCCATCG
AAAGACCACGACGACAGCACACAGTTCGTGCTTAGGGTGAGCAATCTCAA
AGGCTGCCGTTTCTACATTGACAACACACACATTGCACATTGGGGATTCA
GGCGGGAGGGGAGATACATCGAAGGTTTGAGGCAACTCAGTACCAGCCTT
CTCTGTATATACCAGCCGTGCTTTAGGGGTCCGGTAGCACTCCAGAGCCA
TTCTCCTACATGCAAGAAGTTGCGAACTGCCATAGCCTAGTGGCGGGGGC
GGGTGGGGCGCTGGCTATTGATAAAACAACCTCTGGTGGTGGAAGTTCGC
AGCGATGCCGGCGCCAATGTTGAGAAAATTCCCTACACGTACATGACCTT
CTTGGATCTCTCAGTTTGCACGTATCTGGGAGGGCTAAGCTGACGGGGGG
GCGGGGCAGGGGGGTGACATTTCGGGTATGCTGGTATCCAAACCGATTTG
AGCGCTTTTACCGCCCTCAGTTCGGTGCACGGGTGAAAGTGTGTGAGAGC
AAAGGGCCCGTTTTCATCTCAAAGCCATCCCATTGATCGTGGTTTCTCTT
GCTCTGAGGGTACGTCCCCTGGAAGGCCGGTTGTCAACGGTCTTGGTTTT
GGAGGTGGACACGAACCCAGCGAAGCTTTTCTGTTTCGAGCACGGTGACA
GCGTACGTCACTTGAACGTGCGTATCTACCCCACCGCACTGGGCTGGGCA
GATGGGACGCAGAGAGGCGTTTTTCATTGTCCAGCTTGTGGTCTCTTGTT
CCCTCACAGCACGCCTCATTTTTGATTCAGGTTCTTCGTCGCACTGGTCC
CTTCCCCCGACGACGAAAGTATAGAGATTTGGGCGGCAAGAAGATGGTGC
TGCGGGGACTGGATGCCAAATTCAAGACCCTCTCGGTGCGGGACACGTAC
GAGAGGCTCACCGTACCCGCTGGCGAAGATGCCAAGTGGGAAGAACCCAA
ACAACCGTCGGCTCTTCAGGTGACACATTGACTTCAGCATCCATCAGGAA
CCCGTCGGAACCCTACAGACTTGTTCCTCAAGCGTACCTCGCGTAATCTG
AGCAGGGTAGCCTTCAATTGAACGTCCACAACAAATAGTGTGCATTGCTC
CGAAACCTCTCCCACTTCCCTCGTGACCTCGGAGTACCTGAAAATTGACA
ATCGTCGCCGTGGCAAACGCTGGCGTTTCCAGGCTCTCATGGCATCGCTC
GCGGCCATCGGCGAACGGTGTACACCGGGAAACGATACGGCCGGAGCGAT
TCCCGAACGCTATTCGCCGGCAGGGGGGCTCCAAGAAAGAGCGCCACGAG
CCAATCTCTCCTCAACAAAAAACGCGCCACCGGAAGCGCTCGCCTTGCTC
AAAGCCCGTCCTGGGATTGACGGCGCTCCGCTCGGATCACCCGCCGCCAC
CGCCACCGCCGCCGCCGCCGCCACCGCGACATCCGGATCCACAGAAACCA
ACCAGATAATCGCAAACGCCTTCTTCGGACTGAAACCCCTGCCGGCATCT
CCGCAGGGACCAAGTTTGTCGAAGGGCGGCAATCGGCGCAACAAGGCTTC
GCGACGGGTAGCCGCACAAACGAAAGAGGTGGGGCCGCCATCTGCACCGG
CGGCCGGTACGAAAGCGGCCGGCGGGGGGAGAGCTGCGCTCGTTAGGATC
GGGAAGGAGCTGGTCCTTGCGGGCGACGTTAGACGCGTGGGTACCGGGGG
GGCCGGCGACGGAGCAGGCGGACAAGGCAAGCTGAGCGCCCGAATATCCA
AGGCGGCGTAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10812:4118..7278- >mRNA_S-dermatodea_contig10812.552.1 ID=mRNA_S-dermatodea_contig10812.552.1|Name=mRNA_S-dermatodea_contig10812.552.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2790bp|location=Sequence derived from alignment at S-dermatodea_contig10812:4118..7278- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGCGACAGCAAGTGGCGTAGTGACATTGTGGGAGTTCCGAGAATA
CTTTGATCTGCCAGATGATGGCTCCACCACGCGGCTGTTCCGATGTTTCG
ACGAAGACCGCGACAACCGTGTGGGATTCTTGGAGATGGTCGTGGGCCTA
TGGACCTATTATGAACGCGACAGCAAGTGGCGTAGTGACATTGTGGGAGT
TCCGAGAATACTTTGATCTGCCAGATGATGGCTCCACCACGCGGCTGTTC
CGATGTTTCGACGAAGACCGCGACAACCGTGTGGGATTCTTGGAGATGGT
CGTGGGCCTATGGACCTATTGTTGCAACTGCAATGCTTCCCTCATGTGCC
TGTGCTTTGACCTGTATGACACGGACCACAACGGCCAGATATCTCTGACA
GAAGCCGACTTCATGCTCAAGGATGTCTTCGGTGCTCGGTGGGCGACAGA
CGAAGAGGCTAAGGTCTTGCACGCGTGGTTGCACGAGCGGGACGACGCGC
TGCTCGGTTCGCCCGAGCTCGGCGTGGATGCTTGGGTGGCGTTTGTTTCG
GAGAACCTCCAGATCCAAGCGCCTGCCCTCCGCACACGGTTGATACTGCA
AAATAAGGTTGCAACTGCAATGCTTCCCTCATGTGCCTGTGCTTTGACCT
GTATGACACGGACCACAACGGCCAGATATCTCTGACAGAAGCCGACTTCA
TGCTCAAGGATGTCTTCGGTGCTCGGTGGGCGACAGACGAAGAGGCTAAG
GTCTTGCACGCGTGGTTGCACGAGCGGGACGACGCGCTGCTCGGTTCGCC
CGAGCTCGGCGTGGATGCTTGGGTGGCGTTTGTTTCGGAGAACCTCCAGA
TCCAAGCGCCTGCCCTCCGCACACGGTTGATACTGCAAAATAAGGTCATT
GGCGTCGGTTTCTGGACGTTCTGCATGCGGAAGCGCGCGACTATCTACCG
AGGTTGTCGCGTGACGATGGAAAATCTCATCAGCGCCCACGTGTCTCCCG
CGGTGCTAGAGGACCTCGCGCAAGACAGGGATCCATCGAAAGACCACGAC
GACAGCACACAGTTCGTGCTTAGGGTCATTGGCGTCGGTTTCTGGACGTT
CTGCATGCGGAAGCGCGCGACTATCTACCGAGGTTGTCGCGTGACGATGG
AAAATCTCATCAGCGCCCACGTGTCTCCCGCGGTGCTAGAGGACCTCGCG
CAAGACAGGGATCCATCGAAAGACCACGACGACAGCACACAGTTCGTGCT
TAGGGTTCTTCGTCGCACTGGTCCCTTCCCCCGACGACGAAAGTATAGAG
ATTTGGGCGGCAAGAAGATGGTGCTGCGGGGACTGGATGCCAAATTCAAG
ACCCTCTCGGTGCGGGACACGTACGAGAGGCTCACCGTACCCGCTGGCGA
AGATGCCAAGTGGGAAGAACCCAAACAACCGTCGGCTCTTCAGGTTCTTC
GTCGCACTGGTCCCTTCCCCCGACGACGAAAGTATAGAGATTTGGGCGGC
AAGAAGATGGTGCTGCGGGGACTGGATGCCAAATTCAAGACCCTCTCGGT
GCGGGACACGTACGAGAGGCTCACCGTACCCGCTGGCGAAGATGCCAAGT
GGGAAGAACCCAAACAACCGTCGGCTCTTCAGGCTCTCATGGCATCGCTC
GCGGCCATCGGCGAACGGTGTACACCGGGAAACGATACGGCCGGAGCGAT
TCCCGAACGCTATTCGCCGGCAGGGGGGCTCCAAGAAAGAGCGCCACGAG
CCAATCTCTCCTCAACAAAAAACGCGCCACCGGAAGCGCTCGCCTTGCTC
AAAGCCCGTCCTGGGATTGACGGCGCTCCGCTCGGATCACCCGCCGCCAC
CGCCACCGCCGCCGCCGCCGCCACCGCGACATCCGGATCCACAGAAACCA
ACCAGATAATCGCAAACGCCTTCTTCGGACTGAAACCCCTGCCGGCATCT
CCGCAGGGACCAAGTTTGTCGAAGGGCGGCAATCGGCGCAACAAGGCTTC
GCGACGGGTAGCCGCACAAACGAAAGAGGTGGGGCCGCCATCTGCACCGG
CGGCCGGTACGAAAGCGGCCGGCGGGGGGAGAGCTGCGCTCGTTAGGATC
GGGAAGGAGCTGGTCCTTGCGGGCGACGTTAGACGCGTGGGTACCGGGGG
GGCCGGCGACGGAGCAGGCGGACAAGGCAAGCTGAGCGCCCGAATATCCA
AGGCGGCGTAGGCTCTCATGGCATCGCTCGCGGCCATCGGCGAACGGTGT
ACACCGGGAAACGATACGGCCGGAGCGATTCCCGAACGCTATTCGCCGGC
AGGGGGGCTCCAAGAAAGAGCGCCACGAGCCAATCTCTCCTCAACAAAAA
ACGCGCCACCGGAAGCGCTCGCCTTGCTCAAAGCCCGTCCTGGGATTGAC
GGCGCTCCGCTCGGATCACCCGCCGCCACCGCCACCGCCGCCGCCGCCGC
CACCGCGACATCCGGATCCACAGAAACCAACCAGATAATCGCAAACGCCT
TCTTCGGACTGAAACCCCTGCCGGCATCTCCGCAGGGACCAAGTTTGTCG
AAGGGCGGCAATCGGCGCAACAAGGCTTCGCGACGGGTAGCCGCACAAAC
GAAAGAGGTGGGGCCGCCATCTGCACCGGCGGCCGGTACGAAAGCGGCCG
GCGGGGGGAGAGCTGCGCTCGTTAGGATCGGGAAGGAGCTGGTCCTTGCG
GGCGACGTTAGACGCGTGGGTACCGGGGGGGCCGGCGACGGAGCAGGCGG
ACAAGGCAAGCTGAGCGCCCGAATATCCAAGGCGGCGTAG back to top
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