mRNA_S-dermatodea_contig10800.544.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10800.544.1
Unique NamemRNA_S-dermatodea_contig10800.544.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10800.544.1 vs. uniprot
Match: A0A6H5KJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM1_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 2.290e-83
Identity = 139/173 (80.35%), Postives = 157/173 (90.75%), Query Frame = 1 
Query:  187 SVHNVKKVVGVQNATRKALEWLQHGDLTLQDLAQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPDALGEDHVTEVYRFSAGRSAAQALDIGGGKSVALGSISKRIKASEAEIAALNERINVLKTEAAKADPQPQLVLDILRDFMKQDKSLDEDPFYSVAYKATCAAAAKAAK 705
            ++ +VKKV GVQNATRKALEWLQ+GD++L +L QSLPKLSKARVEVVMEALRAAGLVTLVRKHAP+A+GEDHVTEVYRFSAGRS A AL+IGGG+ V+LGSISKRIK S+AE+  LNERINVLK EAAKADP+PQ VL+IL+  MKQDKSL+EDPFYSVAYKATC AA KAAK
Sbjct:  101 TIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAK 273
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BLAST of mRNA_S-dermatodea_contig10800.544.1 vs. uniprot
Match: D7FN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN54_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 4.790e-58
Identity = 101/132 (76.52%), Postives = 116/132 (87.88%), Query Frame = 1 
Query:  187 SVHNVKKVVGVQNATRKALEWLQHGDLTLQDLAQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPDALGEDHVTEVYRFSAGRSAAQALDIGGGKSVALGSISKRIKASEAEIAALNERINVLKTEAAKADP 582
            ++ +VKKV GVQNATRKALEWLQ+GD++L +L QSLPKLSKARVEVVMEALRAAGLVTLVRKHAP+A+GEDHVTEVYRFSAGRS A AL+IGGG+ V+LGSISKRIK S+AE+  LNERINVLK    +  P
Sbjct:  102 TIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKISPVREQP 233
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10800.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJM1_9PHAE2.290e-8380.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN54_ECTSI4.790e-5876.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10800contigS-dermatodea_contig10800:1002..4293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008440.1
Exons3
Model size725
Cds size723
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10800.544.1prot_S-dermatodea_contig10800.544.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10800 1003..4293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.6503365-CDS-S-dermatodea_contig10800:1002..11671622924174.6503365-CDS-S-dermatodea_contig10800:1002..1167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 1003..1167 -
1694079069.0346622-CDS-S-dermatodea_contig10800:1002..11671694079069.0346622-CDS-S-dermatodea_contig10800:1002..1167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 1003..1167 -
1622924174.6612792-CDS-S-dermatodea_contig10800:2837..30051622924174.6612792-CDS-S-dermatodea_contig10800:2837..3005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 2838..3005 -
1694079069.0442224-CDS-S-dermatodea_contig10800:2837..30051694079069.0442224-CDS-S-dermatodea_contig10800:2837..3005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 2838..3005 -
1622924174.677867-CDS-S-dermatodea_contig10800:3903..42931622924174.677867-CDS-S-dermatodea_contig10800:3903..4293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 3904..4293 -
1694079069.0579183-CDS-S-dermatodea_contig10800:3903..42931694079069.0579183-CDS-S-dermatodea_contig10800:3903..4293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 3904..4293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10800.544.1

>prot_S-dermatodea_contig10800.544.1 ID=prot_S-dermatodea_contig10800.544.1|Name=mRNA_S-dermatodea_contig10800.544.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=241bp
VAPVVPVAAPPPPATTAAIIAAMPEHAVEPRSAPVAADTQPKRPRAKVEV
KGEPLRQTRATASVHNVKKVVGVQNATRKALEWLQHGDLTLQDLAQSLPK
LSKARVEVVMEALRAAGLVTLVRKHAPDALGEDHVTEVYRFSAGRSAAQA
LDIGGGKSVALGSISKRIKASEAEIAALNERINVLKTEAAKADPQPQLVL
DILRDFMKQDKSLDEDPFYSVAYKATCAAAAKAAKVVAIAR
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mRNA from alignment at S-dermatodea_contig10800:1002..4293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10800.544.1 ID=mRNA_S-dermatodea_contig10800.544.1|Name=mRNA_S-dermatodea_contig10800.544.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3292bp|location=Sequence derived from alignment at S-dermatodea_contig10800:1002..4293- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCTCCCGTCGTTCCTGTCGCTGCCCCCCCCCCGCCCGCCACGACCGC
GGCCATTATTGCCGCCATGCCGGAGCATGCTGTAGAGCCCCGATCAGCGC
CAGTGGCGGCGGACACGCAGCCGAAGCGCCCTCGAGCGAAAGTAGAGGTT
AAAGGAGAGCCGCTCAGACAGACGCGGGCGACTGCCTCTGTGCACAACGT
GAAGAAGGTGGTGGGCGTGCAGAACGCGACGCGGAAGGCGCTGGAGTGGC
TGCAGCACGGAGATTTGACGCTGCAAGACCTGGCGCAGAGCCTGCCGAAG
CTGTCGAAGGCTCGGGTCGAGGTGGTGATGGAGGCGCTGCGGGCCGCGGG
GTTGGTGACCCTTGTGCGGAAGCACGCGCCCGATGCTTTGGTGAGAGAGA
GAGAGAGCGATGATAATCTCTGACGCGGGGTGTGTGGTCATGGAAGCGGT
AGAGAGAGAGAAGCAAGAGAGAGAGGCGGAGTGTTTAGTTGTCGTTGATC
TTTGGGGAAAGGTTCAAATGTGAGCGAGTGATGTACTCTGTAAACCAAAC
ATGTTCTTGGGCGACAAAGACATGCAGAAAGAAGTACTCGTACTGGTTGG
CCACAAAGAATCGATCTACCTGCTACAGATACTTTATGTTGTAATATTTT
AATAGCTCTAGAGCTCTACAGCTCGATACTTGTAGTTGTAGCATACACTC
GCCCCGCAAGCTTTGACTCACCCCCCTGTGGCGCTATTCTATTGGTGTAC
GTAGCATACTTCTTCGAGATACACCCTTTAGACTTGTTTGTGCATGCACA
CCGCATATGCATGCATCTCGAAAACACGACTCCGCACACCCGCACCTGCC
GCCTCCGCCGTGCCTGTGGAAGCCGCTCACCGCCCCTCGAAACGAAAGCC
GCACACGAAACTGTTGGTTTGAACCCTTAGCACAATTCGACCATGCTGCA
GACAAGAATATTCCTGCGGACACTACTGGTTGTTTCTCTCTCATCGTAGG
TTCACGTAGCCCTTCCTTTCCCCCCTGCCGCACCTGCTGCACCGACAGCA
AAGAGGCGATGTTTCCAGCAGGGGGGGGATGGTTCTATGATACTCCAGCA
GTAAAATCGCGTCTGAAATACATGAACTACAGCTAGTATAGTGCCTGGTA
CGAGCAGTAGAACGACAAGGACGAGGACCATGCCTTTGACACCTCGTAAA
AATGCTGTCGCATCGATTCACGGGAAAAGCGTACTTATATATTTTCCACC
TGTTGACATCGCCCTTCCCCGCCGCGCCCTGAACCAAGGGAGAAGACCAC
GTGACGGAAGTCTACCGGTTCTCCGCCGGCCGGTCCGCGGCGCAGGCGCT
GGATATCGGGGGCGGCAAGTCCGTCGCGCTGGGGTCGATATCGAAGCGCA
TCAAGGCGTCCGAGGCGGAGATAGCCGCGCTGAACGAACGAATCAACGTT
CTCAAGGTGAAACAGCCTGCACAGACAGACTTCAATGCCTTGTGATGATA
AATTAATGCACTCTTCTTGCGTAATGCACATCCTCTGTTGGACAAGGATG
AGTGCCGTGCTCGGCAGGACTCACGCATCTGCACGACCTGTTTTTCTGGC
GCATCGCTTGCGAGGTGATTCATTAAACGTACTTGTGAAAGAGTCGCTTT
TGCGTGAAGCAACACACCTTCGCCGATTGTGTATCATATATTGTACACTT
GTACACAACGTATACTGTATCTACGGAGGTTATCACGAGGTTATATGCAA
CCGATTCTGCCCGAGCGGCACGTCTATAAATATTATTGTTATAGAAGAAA
CCGGCATGTCTTTCAACTGAAATTCGGCAGGCATGCTGACGCGAGTGTGT
CCGCGGTGACAGTAACGGCAAGTGTTTTCTCGCCCCGGAGACACGTCATG
ACGTCGAAAAAGGGATCCCTCCGCTTCGCGCTGAGGAAAAGGGATGGTCT
GGCGCGCAATATCAAATAGTTGATTTTCAGAGCCCCACGTAAGGGTGCTT
GCGTCTTTCTCGGAAAGCCTGCACCTTCGAGAGAATACTATAATATATAC
CTGTACAGGTAGTATTTTTCCAAAGGCCTGCACCGCGTTCAAATACCGTT
ATCCATACTGCTGGAGAGCTCTAGAGCTAATACCGAAGTATCTACACAAC
ACCTGTAGCCTTTTTGTCTCGATTCCTGTTTTTCCGGTTCGAGCTGTACG
CGGATCGGTTGCGAGCGGCCGTTTCCAACATAGACCGGCAGCTGACCAAA
ATTGAAGTTGGCTTGGACTTGAAGACAGCTGCAGCACTCGTTTTCTCTAC
GTGACCGTGCGAGCCTGCCCCACAAAACGCTGCATGATGCTTTGATTGCT
TCTTTGTTTCTTTTGTGTGAACCGCATGTGATTAATGCTTGTAAAATACG
TTGGCACGGACGACAGTAACGTTTTAACGTGGTGTTATTCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGAAGTCTCTCTCCCCGATACCTTACTCCATCA
TTGCTGACACTACCGACAGTCAGTGGGGCCTTCCATGGCTTACACGGCGG
CACATCTGCCGACGTTGCGTCATACCATTATTTTTTGCACCGTCTCGAGC
GCACTTACAAGGCGTTTTTGTGTTTTTTCTGGACGTCTCATGAGTCACTC
CGTTGTACCCTGTTCTGTCCTCGCCTTTACCCCTCTTCCTCGAAGTCCAA
AAAGAGGCTCCACTATTGTCTGTATGTAGTGTCCCGAGTCGGGAAATGCC
ACGGAAGTGAGCCAGGGTGTTGCGGGATCTAGTTGAGATCGTTGTGTTAA
TGCCGGCCGTGGCTGGGCCCGTGGCAGGCAGGCAATTGTTAACGTCGGCT
GATTTGATTTTGACTGACTAGCTTACGTTTGGCCGATCGCCTTTATCCAA
CCCGACTCGTGGTCAGAAGACTGAAGGGCCAGGTGTAAACAGAGCCACCA
TATTACCCTCAAACGTTCTCAATTCTCAGATCAAACGACGGGCTTTCCGA
AACGGCAACGGCTTTAATTAACCGCGAGCCCCCCTCTCCCGCATTTGTGC
CCGACCATCAATTCTCTGAAAATCCCGCATTTTGACATTCATTTATTGCC
GGCGTCCCGTGCCCCCCCCCCCCCAGACGGAGGCCGCGAAAGCAGATCCG
CAGCCCCAACTGGTGCTGGACATCCTGCGGGACTTCATGAAGCAGGACAA
GAGCCTCGACGAGGACCCCTTCTACTCGGTCGCCTACAAGGCGACGTGCG
CCGCTGCCGCGAAGGCGGCGAAGGTCGTTGCGATCGCCCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10800:1002..4293-

>mRNA_S-dermatodea_contig10800.544.1 ID=mRNA_S-dermatodea_contig10800.544.1|Name=mRNA_S-dermatodea_contig10800.544.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at S-dermatodea_contig10800:1002..4293- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCTCCCGTCGTTCCTGTCGCTGCCCCCCCCCCGCCCGCCACGACCGC
GGCCATTATTGCCGCCATGCCGGAGCATGCTGTAGAGCCCCGATCAGCGC
CAGTGGCGGCGGACACGCAGCCGAAGCGCCCTCGAGCGAAAGTAGAGGTT
AAAGGAGAGCCGCTCAGACAGACGCGGGCGACTGCCTCTGTGCACAACGT
GAAGAAGGTGGTGGGCGTGCAGAACGCGACGCGGAAGGCGCTGGAGTGGC
TGCAGCACGGAGATTTGACGCTGCAAGACCTGGCGCAGAGCCTGCCGAAG
CTGTCGAAGGCTCGGGTCGAGGTGGTGATGGAGGCGCTGCGGGCCGCGGG
GTTGGTGACCCTTGTGCGGAAGCACGCGCCCGATGCTTTGGTCGCTCCCG
TCGTTCCTGTCGCTGCCCCCCCCCCGCCCGCCACGACCGCGGCCATTATT
GCCGCCATGCCGGAGCATGCTGTAGAGCCCCGATCAGCGCCAGTGGCGGC
GGACACGCAGCCGAAGCGCCCTCGAGCGAAAGTAGAGGTTAAAGGAGAGC
CGCTCAGACAGACGCGGGCGACTGCCTCTGTGCACAACGTGAAGAAGGTG
GTGGGCGTGCAGAACGCGACGCGGAAGGCGCTGGAGTGGCTGCAGCACGG
AGATTTGACGCTGCAAGACCTGGCGCAGAGCCTGCCGAAGCTGTCGAAGG
CTCGGGTCGAGGTGGTGATGGAGGCGCTGCGGGCCGCGGGGTTGGTGACC
CTTGTGCGGAAGCACGCGCCCGATGCTTTGGGAGAAGACCACGTGACGGA
AGTCTACCGGTTCTCCGCCGGCCGGTCCGCGGCGCAGGCGCTGGATATCG
GGGGCGGCAAGTCCGTCGCGCTGGGGTCGATATCGAAGCGCATCAAGGCG
TCCGAGGCGGAGATAGCCGCGCTGAACGAACGAATCAACGTTCTCAAGGG
AGAAGACCACGTGACGGAAGTCTACCGGTTCTCCGCCGGCCGGTCCGCGG
CGCAGGCGCTGGATATCGGGGGCGGCAAGTCCGTCGCGCTGGGGTCGATA
TCGAAGCGCATCAAGGCGTCCGAGGCGGAGATAGCCGCGCTGAACGAACG
AATCAACGTTCTCAAGACGGAGGCCGCGAAAGCAGATCCGCAGCCCCAAC
TGGTGCTGGACATCCTGCGGGACTTCATGAAGCAGGACAAGAGCCTCGAC
GAGGACCCCTTCTACTCGGTCGCCTACAAGGCGACGTGCGCCGCTGCCGC
GAAGGCGGCGAAGGTCGTTGCGATCGCCCGAACGGAGGCCGCGAAAGCAG
ATCCGCAGCCCCAACTGGTGCTGGACATCCTGCGGGACTTCATGAAGCAG
GACAAGAGCCTCGACGAGGACCCCTTCTACTCGGTCGCCTACAAGGCGAC
GTGCGCCGCTGCCGCGAAGGCGGCGAAGGTCGTTGCGATCGCCCGA
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