mRNA_S-dermatodea_contig1080.541.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI) HSP 1 Score: 321 bits (822), Expect = 6.930e-104 Identity = 163/257 (63.42%), Postives = 203/257 (78.99%), Query Frame = 1
Query: 457 PRFLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQSGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTG-FVREPPYTQGFSVKITGPGTVFIQSTHAGRMSR----DRMAVRAGGAGGDMVKAAAITVGILVLLYALVDVE 1212
PRFLSLG+G+EVLQVAL PGD+ILA E+AF YRGLGLQ E P TG +GRALGW+G+KNDRVVK+TNEG +PTY+GL A LPGKVIPV+L +SG LLAKP +FLCS N +S ++++L EG Q +++MRKI G+GMCYI GGAAVQK LGR E+MV E GCVAA+S +CKIV EE G +REPPY QGF VKITGPG+VFIQSTH GR+SR DR+A + G GGDM+KAA +T+ I+++++ ++D E
Sbjct: 18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQQELQP--TGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEGQSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVA-QGGSGGGDMMKAAVLTLVIMIVVFTVLDWE 271
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A2K1NT36_9BACT (Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1NT36_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 1.590e-18 Identity = 60/217 (27.65%), Postives = 107/217 (49.31%), Query Frame = 1
Query: 475 GDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGA-----LGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMS 1104
GD +++++ L PG+ I A A Y G+ ++ NTG L RA ++ + + EG+ +V AP PGK++P++L+Q +G + + FLC+ ++ + G F +++++G GM +I AGG ++K L ET+ + GC+ + K + GF +G F K+TGPGT+++QS R++
Sbjct: 11 GDDMQLVEIELDPGEGIRAEVGAMMYMEDGIAMQT---NTGGGLFRGLKRAFAG---ESFFITNFVQEGSGKGHVAFGAPYPGKILPIDLIQFNGSFICQKDSFLCAANGIEIEIEFTKRIGTGLFGGEGFILQRLEGHGMAFIHAGGTVIEKHLEPGETLRVDTGCIVGFQKTVKYDIQFVGGFKNALFGGEGMFLAKLTGPGTIYLQSLPFSRLA 221
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A316CV55_9BACT (Uncharacterized protein (TIGR00266 family) n=1 Tax=Oceanotoga teriensis TaxID=515440 RepID=A0A316CV55_9BACT) HSP 1 Score: 94.7 bits (234), Expect = 3.130e-18 Identity = 65/224 (29.02%), Postives = 110/224 (49.11%), Query Frame = 1
Query: 472 LGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGA-LGRALGWMGM-KNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMSRDRMAVRAG 1131
+GD +++++ L PG+ + A A Y + ++ NTG L R L M ++ + + G+ +V AP PGK++P+NL +G + + FLC+ ++ + G F ++++QG GM +I AGGA V+K L E + + GC+ S S E GF +G F K++GPGTV++QS R++ DR+ +G
Sbjct: 10 VGDDMQLVEIELDPGEGVRAEAGAMMYMENDIMMQT---NTGGGLFRGLKRMFTGESFFITNFVQNGSGKGHVAFGAPYPGKIVPLNLTDFNGTFICQKDSFLCAANGIEIEIELTKKIGTGLFGGEGFILQRLQGHGMAFIHAGGALVEKQLNAGEILKVDTGCIVGFSNSIHYDIEFIGGFKNALFGGEGMFLAKLSGPGTVYLQSLPFSRLA-DRIVAASG 229
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A0K9PRK4_ZOSMR (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PRK4_ZOSMR) HSP 1 Score: 94.7 bits (234), Expect = 5.130e-18 Identity = 66/221 (29.86%), Postives = 106/221 (47.96%), Query Frame = 1
Query: 463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLE-AYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMR-KIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG---FSVKITGPGTVFIQSTHAGRMSR 1107
F LG +++Q+ L + A + CY +Q++ Y L W+ K + N G+ YVG+AAP PG+++P++L G+LL +P FLCS +S S P I +R K+ G G+ ++ +GG+ QKTL ET+V + C+ A++++ + R G +V +TGPG VFIQS R+S+
Sbjct: 25 FQILGGEAQIVQIMLKSLQKVTAKPGSMCYMSGSIQMDNVYALEQDGGVWQLQWIFGKTAISINLLNSGSDDGYVGIAAPSPGRILPIDLANFGGELLCQPDAFLCSVNDVTVSNSLEHPRGRNIMPGAEIVLRQKLVGQGLAFLVSGGSVAQKTLQPGETLVMDSACIIAMTSTISFQIKNMNA--RRAIIFGGENHMTVSLTGPGVVFIQSLPFYRLSK 243
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A5P1ENF3_ASPOF (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ENF3_ASPOF) HSP 1 Score: 93.2 bits (230), Expect = 1.650e-17 Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1
Query: 463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAY--PANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMR-KIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPY---TQGFSVKITGPGTVFIQSTHAGRMSR 1107
F +G +++Q+ L + + A CY +QL+ P + G AL W+ KN + +N G YVG+AAP P +++P++L G++L +P FLCS + +S + L F + ++ K+ G G+ ++ G+ VQK L E +V ++ C+ A++++ ++ VR + TQ F+ +TGPG VFIQS R+S+
Sbjct: 25 FQIIGGEAQIVQIMLKSQEKVTAKPGTMCYTSGSIQLDNIYLPEHEGG---ALQWLLGKNATSIVLSNSGGDNGYVGIAAPSPARILPIDLANFGGEILIQPDAFLCSVNDVTIKSS-VDLRARNVFSGSEVFLKQKLVGQGLAFLVGCGSVVQKILDVGEVVVVDVACIVAMTSTIDFQLKQSNP-VRRTIFGGETQ-FTASLTGPGIVFIQSLPFHRLSQ 240
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A521RJ11_9GAMM (TIGR00266 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521RJ11_9GAMM) HSP 1 Score: 92.4 bits (228), Expect = 1.910e-17 Identity = 70/248 (28.23%), Postives = 113/248 (45.56%), Query Frame = 1
Query: 475 GDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDR---VVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQS----------------THAGRMSRDRMAVRAGGAGGDMVK 1155
GD ++++V L PG+ + A Y G++++ +TG G G+ M + + N G A V AAP PGK++P +L G +L + FLC+ ++ + + G F ++K+ G+GM ++ AGG ++K L E + + GC+ A + + + GF +G F K+TGPGTV++QS TH G SR GG GG +VK
Sbjct: 11 GDDLQLVEVELDPGEGVRAEAGTMTYMEQGIEMQT---DTGG-GVFQGFKRMLTGESFFITTFMNSGKAKRRVAFAAPYPGKIVPFDLDSFGGQVLCQKDSFLCAARGTEIEIAFTKKIGAGLFGGEGFILQKLSGNGMVFVHAGGTVIRKDLAAGEELRVDTGCLVAFAMTVDYDIQFIGGFKNALFGGEGLFLAKMTGPGTVYLQSLPFSRLVDRIKAGITFTHGGDQSRG-----IGGIGGSIVK 249
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A4U7JC59_9FIRM (TIGR00266 family protein n=1 Tax=Ruminiclostridium herbifermentans TaxID=2488810 RepID=A0A4U7JC59_9FIRM) HSP 1 Score: 92.4 bits (228), Expect = 1.940e-17 Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 1
Query: 472 LGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMSRDRM 1116
+GD +++++ L P + + A A Y + ++ GAL + ++ + + N GT +V +AP PGK+IP++L G L + FLC ++ + R G F ++K+ G GM +I AGG ++K L +T+ + GC+ A S + + GF +G F K+TGPGTV++QS R++ DR+
Sbjct: 10 IGDDMQIVEIELDPSEGVRAEAGAMMYTDQNIVMQT-STQGGALKGFKRMLTGESFFITTFYNTGTQKEHVAFSAPYPGKIIPIDLASVGGSFLCQKDAFLCCANGVEVEVAFTRKLGAGFFGGEGFILQKLVGDGMAFIHAGGTIIRKDLMPGQTLKVDTGCLVAFSPTVDYDIQFVGGFKNALFGGEGVFLAKMTGPGTVYLQSLPLARLA-DRL 224
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A3N9QHI8_9RHOB (TIGR00266 family protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3N9QHI8_9RHOB) HSP 1 Score: 92.4 bits (228), Expect = 2.220e-17 Identity = 69/239 (28.87%), Postives = 117/239 (48.95%), Query Frame = 1
Query: 463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAY-----PANTGALGRALG----WMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYT-QG-FSVKITGPGTVFIQSTHAGRMSRDRMAVRAGGAGG 1143
F G+ + ++V L PG++ + A Y G+ ++ +G +G +G + ++ + NEG++ V +A PGK+IP++LL+ G L+A+ FLC+ L + + G F M+K++G G ++ AGG Q+ L ET+ + GCV A + E + G V+ + +G F ++TGPGTV++QS RM+ DR+ A AGG
Sbjct: 8 FEIFGESMQYVEVELDPGEAAVGEAGAMYYMEDGIAMDTVFGDGSTGQSGLMGTLMGAGKRLLTGESVFTTVFVNEGSSKRKVAFSASYPGKIIPIHLLELGGTLIAQKDSFLCAAKGVSLGIALQKRLGAGLFGGEGFIMQKLEGDGYAFLHAGGTLTQRRLAPGETLRVDTGCVVAYQPTISFDIE-YVGKVKSALFGGEGLFFARMTGPGTVWLQSLPLSRMA-DRIIASAPKAGG 244
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A2I0V769_9ASPA (Altered inheritance of mitochondria protein 24, mitochondrial n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0V769_9ASPA) HSP 1 Score: 92.8 bits (229), Expect = 2.250e-17 Identity = 61/220 (27.73%), Postives = 110/220 (50.00%), Query Frame = 1
Query: 463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEA--YPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQGF--SVKITGPGTVFIQSTHAGRMSR 1107
F LG +VLQ+ L P + + A CY +Q+ +P + G + + W+ K+ + +TN G +VG++AP P +++P++L G++ +P FLCS +S + + I +K+ G G+ ++ GG+ VQK L E +V + C+ A++ + + ++ VR + + +V +TGPG VFIQS R+S+
Sbjct: 25 FQILGGEAQVLQIMLKPQEKVTAKPGTMCYMSGSVQINNIYFPEHEGGIWQ---WLFGKSATSIVFTNAGPDDGFVGISAPSPARILPIDLANFGGEIFCQPDAFLCSLNDVTISNAMDQRARNIASGVEVILKQKLVGQGLAFLVGGGSVVQKVLEDGEVVVVDAACLVAMTTTINSQVK-YSHPVRRAVFGGDYQVTVSLTGPGIVFIQSLPFHRLSQ 240
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A2A8D1C1_9BACT (TIGR00266 family protein n=1 Tax=Longibacter salinarum TaxID=1850348 RepID=A0A2A8D1C1_9BACT) HSP 1 Score: 92.0 bits (227), Expect = 2.640e-17 Identity = 62/218 (28.44%), Postives = 105/218 (48.17%), Query Frame = 1
Query: 463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDR---VVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQSGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMS 1104
F GD ++++V L PG+++ A Y G++++ +TG G G+ M + + +T G + V AAP PGK++PV+L Q L + FLC+ ++ + + G F ++++ G G ++ AGG V+ L ET+ + GC+AA S + GF +G F K+TGPGTV++QS R++
Sbjct: 11 FALKGDDMQLVEVELDPGEAVRAEAGTMLYMSDGVEMQT---DTGG-GMFKGFKRMISGESFFITSFTYSGPSKGRVAFAAPYPGKIVPVDLSQHDGFLCQKDAFLCADQDVEVEVAFNKKLGAGLFGGEGFILQRLTGQGWAFVHAGGTIVEHKLEAGETLRVDTGCIAAFSGTVDYDINFVGGFRNALFGGEGVFLAKLTGPGTVYLQSLPFARLA 224 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1080.541.1 >prot_S-dermatodea_contig1080.541.1 ID=prot_S-dermatodea_contig1080.541.1|Name=mRNA_S-dermatodea_contig1080.541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=270bp MDEASAAPSPASTDSTPRFLSLGDGNEVLQVALAPGDSILAAERAFCYRGback to top mRNA from alignment at S-dermatodea_contig1080:9944..13951- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1080.541.1 ID=mRNA_S-dermatodea_contig1080.541.1|Name=mRNA_S-dermatodea_contig1080.541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4008bp|location=Sequence derived from alignment at S-dermatodea_contig1080:9944..13951- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1080:9944..13951- >mRNA_S-dermatodea_contig1080.541.1 ID=mRNA_S-dermatodea_contig1080.541.1|Name=mRNA_S-dermatodea_contig1080.541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at S-dermatodea_contig1080:9944..13951- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |