mRNA_S-dermatodea_contig1080.541.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1080.541.1
Unique NamemRNA_S-dermatodea_contig1080.541.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 6.930e-104
Identity = 163/257 (63.42%), Postives = 203/257 (78.99%), Query Frame = 1
Query:  457 PRFLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQSGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTG-FVREPPYTQGFSVKITGPGTVFIQSTHAGRMSR----DRMAVRAGGAGGDMVKAAAITVGILVLLYALVDVE 1212
            PRFLSLG+G+EVLQVAL PGD+ILA E+AF YRGLGLQ E  P  TG +GRALGW+G+KNDRVVK+TNEG +PTY+GL A LPGKVIPV+L +SG LLAKP +FLCS   N +S ++++L  EG   Q +++MRKI G+GMCYI  GGAAVQK LGR E+MV E GCVAA+S +CKIV EE  G  +REPPY QGF VKITGPG+VFIQSTH GR+SR    DR+A + G  GGDM+KAA +T+ I+++++ ++D E
Sbjct:   18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQQELQP--TGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEGQSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVA-QGGSGGGDMMKAAVLTLVIMIVVFTVLDWE 271          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A2K1NT36_9BACT (Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1NT36_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.590e-18
Identity = 60/217 (27.65%), Postives = 107/217 (49.31%), Query Frame = 1
Query:  475 GDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGA-----LGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMS 1104
            GD  +++++ L PG+ I A   A  Y   G+ ++    NTG      L RA      ++  +  +  EG+   +V   AP PGK++P++L+Q +G  + +   FLC+    ++     +    G F      +++++G GM +I AGG  ++K L   ET+  + GC+     + K   +   GF       +G F  K+TGPGT+++QS    R++
Sbjct:   11 GDDMQLVEIELDPGEGIRAEVGAMMYMEDGIAMQT---NTGGGLFRGLKRAFAG---ESFFITNFVQEGSGKGHVAFGAPYPGKILPIDLIQFNGSFICQKDSFLCAANGIEIEIEFTKRIGTGLFGGEGFILQRLEGHGMAFIHAGGTVIEKHLEPGETLRVDTGCIVGFQKTVKYDIQFVGGFKNALFGGEGMFLAKLTGPGTIYLQSLPFSRLA 221          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A316CV55_9BACT (Uncharacterized protein (TIGR00266 family) n=1 Tax=Oceanotoga teriensis TaxID=515440 RepID=A0A316CV55_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 3.130e-18
Identity = 65/224 (29.02%), Postives = 110/224 (49.11%), Query Frame = 1
Query:  472 LGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGA-LGRALGWMGM-KNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMSRDRMAVRAG 1131
            +GD  +++++ L PG+ + A   A  Y    + ++    NTG  L R L  M   ++  +  +   G+   +V   AP PGK++P+NL   +G  + +   FLC+    ++     +    G F      ++++QG GM +I AGGA V+K L   E +  + GC+   S S     E   GF       +G F  K++GPGTV++QS    R++ DR+   +G
Sbjct:   10 VGDDMQLVEIELDPGEGVRAEAGAMMYMENDIMMQT---NTGGGLFRGLKRMFTGESFFITNFVQNGSGKGHVAFGAPYPGKIVPLNLTDFNGTFICQKDSFLCAANGIEIEIELTKKIGTGLFGGEGFILQRLQGHGMAFIHAGGALVEKQLNAGEILKVDTGCIVGFSNSIHYDIEFIGGFKNALFGGEGMFLAKLSGPGTVYLQSLPFSRLA-DRIVAASG 229          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A0K9PRK4_ZOSMR (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PRK4_ZOSMR)

HSP 1 Score: 94.7 bits (234), Expect = 5.130e-18
Identity = 66/221 (29.86%), Postives = 106/221 (47.96%), Query Frame = 1
Query:  463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLE-AYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMR-KIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG---FSVKITGPGTVFIQSTHAGRMSR 1107
            F  LG   +++Q+ L     + A   + CY    +Q++  Y          L W+  K    +   N G+   YVG+AAP PG+++P++L    G+LL +P  FLCS     +S S          P   I +R K+ G G+ ++ +GG+  QKTL   ET+V +  C+ A++++     +      R      G    +V +TGPG VFIQS    R+S+
Sbjct:   25 FQILGGEAQIVQIMLKSLQKVTAKPGSMCYMSGSIQMDNVYALEQDGGVWQLQWIFGKTAISINLLNSGSDDGYVGIAAPSPGRILPIDLANFGGELLCQPDAFLCSVNDVTVSNSLEHPRGRNIMPGAEIVLRQKLVGQGLAFLVSGGSVAQKTLQPGETLVMDSACIIAMTSTISFQIKNMNA--RRAIIFGGENHMTVSLTGPGVVFIQSLPFYRLSK 243          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A5P1ENF3_ASPOF (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ENF3_ASPOF)

HSP 1 Score: 93.2 bits (230), Expect = 1.650e-17
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1
Query:  463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAY--PANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMR-KIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPY---TQGFSVKITGPGTVFIQSTHAGRMSR 1107
            F  +G   +++Q+ L   + + A     CY    +QL+    P + G    AL W+  KN   +  +N G    YVG+AAP P +++P++L    G++L +P  FLCS     + +S + L     F    + ++ K+ G G+ ++   G+ VQK L   E +V ++ C+ A++++     ++    VR   +   TQ F+  +TGPG VFIQS    R+S+
Sbjct:   25 FQIIGGEAQIVQIMLKSQEKVTAKPGTMCYTSGSIQLDNIYLPEHEGG---ALQWLLGKNATSIVLSNSGGDNGYVGIAAPSPARILPIDLANFGGEILIQPDAFLCSVNDVTIKSS-VDLRARNVFSGSEVFLKQKLVGQGLAFLVGCGSVVQKILDVGEVVVVDVACIVAMTSTIDFQLKQSNP-VRRTIFGGETQ-FTASLTGPGIVFIQSLPFHRLSQ 240          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A521RJ11_9GAMM (TIGR00266 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521RJ11_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 1.910e-17
Identity = 70/248 (28.23%), Postives = 113/248 (45.56%), Query Frame = 1
Query:  475 GDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDR---VVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQS----------------THAGRMSRDRMAVRAGGAGGDMVK 1155
            GD  ++++V L PG+ + A      Y   G++++    +TG  G   G+  M       +  + N G A   V  AAP PGK++P +L    G +L +   FLC+    ++  +  +    G F      ++K+ G+GM ++ AGG  ++K L   E +  + GC+ A + +     +   GF       +G F  K+TGPGTV++QS                TH G  SR       GG GG +VK
Sbjct:   11 GDDLQLVEVELDPGEGVRAEAGTMTYMEQGIEMQT---DTGG-GVFQGFKRMLTGESFFITTFMNSGKAKRRVAFAAPYPGKIVPFDLDSFGGQVLCQKDSFLCAARGTEIEIAFTKKIGAGLFGGEGFILQKLSGNGMVFVHAGGTVIRKDLAAGEELRVDTGCLVAFAMTVDYDIQFIGGFKNALFGGEGLFLAKMTGPGTVYLQSLPFSRLVDRIKAGITFTHGGDQSRG-----IGGIGGSIVK 249          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A4U7JC59_9FIRM (TIGR00266 family protein n=1 Tax=Ruminiclostridium herbifermentans TaxID=2488810 RepID=A0A4U7JC59_9FIRM)

HSP 1 Score: 92.4 bits (228), Expect = 1.940e-17
Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 1
Query:  472 LGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMSRDRM 1116
            +GD  +++++ L P + + A   A  Y    + ++      GAL      +  ++  +  + N GT   +V  +AP PGK+IP++L    G  L +   FLC     ++  +  R    G F      ++K+ G GM +I AGG  ++K L   +T+  + GC+ A S +     +   GF       +G F  K+TGPGTV++QS    R++ DR+
Sbjct:   10 IGDDMQIVEIELDPSEGVRAEAGAMMYTDQNIVMQT-STQGGALKGFKRMLTGESFFITTFYNTGTQKEHVAFSAPYPGKIIPIDLASVGGSFLCQKDAFLCCANGVEVEVAFTRKLGAGFFGGEGFILQKLVGDGMAFIHAGGTIIRKDLMPGQTLKVDTGCLVAFSPTVDYDIQFVGGFKNALFGGEGVFLAKMTGPGTVYLQSLPLARLA-DRL 224          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A3N9QHI8_9RHOB (TIGR00266 family protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3N9QHI8_9RHOB)

HSP 1 Score: 92.4 bits (228), Expect = 2.220e-17
Identity = 69/239 (28.87%), Postives = 117/239 (48.95%), Query Frame = 1
Query:  463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAY-----PANTGALGRALG----WMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYT-QG-FSVKITGPGTVFIQSTHAGRMSRDRMAVRAGGAGG 1143
            F   G+  + ++V L PG++ +    A  Y   G+ ++          +G +G  +G     +  ++     + NEG++   V  +A  PGK+IP++LL+  G L+A+   FLC+     L  +  +    G F      M+K++G G  ++ AGG   Q+ L   ET+  + GCV A   +     E + G V+   +  +G F  ++TGPGTV++QS    RM+ DR+   A  AGG
Sbjct:    8 FEIFGESMQYVEVELDPGEAAVGEAGAMYYMEDGIAMDTVFGDGSTGQSGLMGTLMGAGKRLLTGESVFTTVFVNEGSSKRKVAFSASYPGKIIPIHLLELGGTLIAQKDSFLCAAKGVSLGIALQKRLGAGLFGGEGFIMQKLEGDGYAFLHAGGTLTQRRLAPGETLRVDTGCVVAYQPTISFDIE-YVGKVKSALFGGEGLFFARMTGPGTVWLQSLPLSRMA-DRIIASAPKAGG 244          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A2I0V769_9ASPA (Altered inheritance of mitochondria protein 24, mitochondrial n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0V769_9ASPA)

HSP 1 Score: 92.8 bits (229), Expect = 2.250e-17
Identity = 61/220 (27.73%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEA--YPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQ-SGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQGF--SVKITGPGTVFIQSTHAGRMSR 1107
            F  LG   +VLQ+ L P + + A     CY    +Q+    +P + G + +   W+  K+   + +TN G    +VG++AP P +++P++L    G++  +P  FLCS     +S +  +           I  +K+ G G+ ++  GG+ VQK L   E +V +  C+ A++ +     + ++  VR   +   +  +V +TGPG VFIQS    R+S+
Sbjct:   25 FQILGGEAQVLQIMLKPQEKVTAKPGTMCYMSGSVQINNIYFPEHEGGIWQ---WLFGKSATSIVFTNAGPDDGFVGISAPSPARILPIDLANFGGEIFCQPDAFLCSLNDVTISNAMDQRARNIASGVEVILKQKLVGQGLAFLVGGGSVVQKVLEDGEVVVVDAACLVAMTTTINSQVK-YSHPVRRAVFGGDYQVTVSLTGPGIVFIQSLPFHRLSQ 240          
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Match: A0A2A8D1C1_9BACT (TIGR00266 family protein n=1 Tax=Longibacter salinarum TaxID=1850348 RepID=A0A2A8D1C1_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 2.640e-17
Identity = 62/218 (28.44%), Postives = 105/218 (48.17%), Query Frame = 1
Query:  463 FLSLGDGNEVLQVALAPGDSILAAERAFCYRGLGLQLEAYPANTGALGRALGWMGMKNDR---VVKWTNEGTAPTYVGLAAPLPGKVIPVNLLQSGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMRKIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTGFVREPPYTQG-FSVKITGPGTVFIQSTHAGRMS 1104
            F   GD  ++++V L PG+++ A      Y   G++++    +TG  G   G+  M +     +  +T  G +   V  AAP PGK++PV+L Q    L +   FLC+    ++  +  +    G F      ++++ G G  ++ AGG  V+  L   ET+  + GC+AA S +         GF       +G F  K+TGPGTV++QS    R++
Sbjct:   11 FALKGDDMQLVEVELDPGEAVRAEAGTMLYMSDGVEMQT---DTGG-GMFKGFKRMISGESFFITSFTYSGPSKGRVAFAAPYPGKIVPVDLSQHDGFLCQKDAFLCADQDVEVEVAFNKKLGAGLFGGEGFILQRLTGQGWAFVHAGGTIVEHKLEAGETLRVDTGCIAAFSGTVDYDINFVGGFRNALFGGEGVFLAKLTGPGTVYLQSLPFARLA 224          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1080.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIZ3_ECTSI6.930e-10463.42Altered inheritance of mitochondria protein 24, mi... [more]
A0A2K1NT36_9BACT1.590e-1827.65Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA... [more]
A0A316CV55_9BACT3.130e-1829.02Uncharacterized protein (TIGR00266 family) n=1 Tax... [more]
A0A0K9PRK4_ZOSMR5.130e-1829.86Altered inheritance of mitochondria protein 24, mi... [more]
A0A5P1ENF3_ASPOF1.650e-1729.28Altered inheritance of mitochondria protein 24, mi... [more]
A0A521RJ11_9GAMM1.910e-1728.23TIGR00266 family protein n=1 Tax=Gammaproteobacter... [more]
A0A4U7JC59_9FIRM1.940e-1728.11TIGR00266 family protein n=1 Tax=Ruminiclostridium... [more]
A0A3N9QHI8_9RHOB2.220e-1728.87TIGR00266 family protein n=2 Tax=Proteobacteria Ta... [more]
A0A2I0V769_9ASPA2.250e-1727.73Altered inheritance of mitochondria protein 24, mi... [more]
A0A2A8D1C1_9BACT2.640e-1728.44TIGR00266 family protein n=1 Tax=Longibacter salin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1080contigS-dermatodea_contig1080:9944..13951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score103.2
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog88036.EFJ34258
EggNOG free text desc.Mitochondrial biogenesis AIM24
EggNOG OGs2QVFQ@2759,37M7G@33090,3GGP2@35493,COG2013@1
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Ec32 orthologEc-07_005040.1
Exons5
Model size1519
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.3825712-UTR-S-dermatodea_contig1080:9943..102441622924174.3825712-UTR-S-dermatodea_contig1080:9943..10244Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1080 9944..10244 -
1694079068.8648784-UTR-S-dermatodea_contig1080:9943..102441694079068.8648784-UTR-S-dermatodea_contig1080:9943..10244Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1080 9944..10244 -
1622924174.4534323-UTR-S-dermatodea_contig1080:13543..139511622924174.4534323-UTR-S-dermatodea_contig1080:13543..13951Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1080 13544..13951 -
1694079068.919424-UTR-S-dermatodea_contig1080:13543..139511694079068.919424-UTR-S-dermatodea_contig1080:13543..13951Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1080 13544..13951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.392391-CDS-S-dermatodea_contig1080:10244..104051622924174.392391-CDS-S-dermatodea_contig1080:10244..10405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 10245..10405 -
1694079068.874086-CDS-S-dermatodea_contig1080:10244..104051694079068.874086-CDS-S-dermatodea_contig1080:10244..10405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 10245..10405 -
1622924174.4026244-CDS-S-dermatodea_contig1080:10788..109501622924174.4026244-CDS-S-dermatodea_contig1080:10788..10950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 10789..10950 -
1694079068.881951-CDS-S-dermatodea_contig1080:10788..109501694079068.881951-CDS-S-dermatodea_contig1080:10788..10950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 10789..10950 -
1622924174.4184244-CDS-S-dermatodea_contig1080:11500..116191622924174.4184244-CDS-S-dermatodea_contig1080:11500..11619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 11501..11619 -
1694079068.893982-CDS-S-dermatodea_contig1080:11500..116191694079068.893982-CDS-S-dermatodea_contig1080:11500..11619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 11501..11619 -
1622924174.4297063-CDS-S-dermatodea_contig1080:12091..122471622924174.4297063-CDS-S-dermatodea_contig1080:12091..12247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 12092..12247 -
1694079068.901301-CDS-S-dermatodea_contig1080:12091..122471694079068.901301-CDS-S-dermatodea_contig1080:12091..12247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 12092..12247 -
1622924174.4405942-CDS-S-dermatodea_contig1080:13331..135431622924174.4405942-CDS-S-dermatodea_contig1080:13331..13543Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 13332..13543 -
1694079068.9089084-CDS-S-dermatodea_contig1080:13331..135431694079068.9089084-CDS-S-dermatodea_contig1080:13331..13543Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1080 13332..13543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1080.541.1prot_S-dermatodea_contig1080.541.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1080 10245..13543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1080.541.1

>prot_S-dermatodea_contig1080.541.1 ID=prot_S-dermatodea_contig1080.541.1|Name=mRNA_S-dermatodea_contig1080.541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=270bp
MDEASAAPSPASTDSTPRFLSLGDGNEVLQVALAPGDSILAAERAFCYRG
LGLQLEAYPANTGALGRALGWMGMKNDRVVKWTNEGTAPTYVGLAAPLPG
KVIPVNLLQSGDLLAKPQMFLCSFTSNQLSASRLRLTPEGPFPQHNIDMR
KIQGSGMCYIQAGGAAVQKTLGRSETMVAEIGCVAAISASCKIVAEEHTG
FVREPPYTQGFSVKITGPGTVFIQSTHAGRMSRDRMAVRAGGAGGDMVKA
AAITVGILVLLYALVDVEY*
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mRNA from alignment at S-dermatodea_contig1080:9944..13951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1080.541.1 ID=mRNA_S-dermatodea_contig1080.541.1|Name=mRNA_S-dermatodea_contig1080.541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4008bp|location=Sequence derived from alignment at S-dermatodea_contig1080:9944..13951- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCATGCCACACAGATTCTGTCTGGAACTCCTCGATTGCTGTAGTTTTTT TTTTTTTTTCGGCGGATTTTTGCCCACAGCTGCCACACTACTATTAATAG CCTGTTCTACAAGTCAAAGTCATTGCTGTGCTCTCTTCCCTCCCACATCT CCAGCACCGAGCGAGCCCGCAGGTGCGACCACGCTGTACAGGAGTGCTCC ATTCTTCAGAGGGAGCCTCTGCGGCAGCTAGCCCTACCACCCACGGCATT CCTGCGTTTGTGCTTGTTGCGGAGACCAAACCTCAGACCGGCTCTGAGTA CAGCTATAGCTGCAGTACTGTACGAGAAGCTGAAGGGAGCTAGCTTCCCA CACTCTTAGACGGCACAGAGATCTGAGCACATCTTTGCAACCACACTAGT CCGCAACGATGGACGAGGCGTCGGCTGCACCCTCGCCGGCTAGCACGGAT TCGACTCCCCGATTTCTTTCGCTCGGGGATGGGAACGAAGTACTTCAAGT CGCTCTCGCTCCAGGCGACTCCATTCTGGCCGCCGAGCGCGCCTTTTGCT ACAGAGGATTGGGATTGCAGCTGGAAGCATACCCCGCCAACACCGGGGCG CTGGGGAGGGCTCTGGGATGGTGAGCAAGCGCGGTTGACCATAGAGCTCG TTGCAGCGCATGCATAGGATGTATCGAGCAGCATCGAGAGCTCTGTGCTG CGAGGTGCGGCGGCTGCTGCTGTTGAGCAGGTGGTTTCCGACTGTAGGAT TGTGTGTGCCTCTGGCTCTGGAGTGTTTTCGTATCCCGCCGCATTTTTTC GGTGTGTTTTGGTTCAGGCTTCAGGCATTGTCGTCGTGGACCAATGAGAA GTCATAGCAAGCACAGCAGTGACTGCGCGTCGTGGTCTATTGATGCATGT GCTATCATGTGTACTGGTAGTGGGAGTCGCCCCAGGGCGCCGCCAAATCG CTCGAGTTTCTCTGCACTCTCCTAATAAGATTTCGACCAGTGTCAGCTCT CGTCGGGCGATTGTTGCGCTCTGACATACTAATACTGTAGAACTCTTGAG CTCTAGTGTTGTAGAGCTCCAAACTACCTCTGGTTGTATTACAGCAGTCG TGCTGTACCACTTGTAGTAGGCCGTTAGGTAAAGCCATGTGTCGTGAACT CGGTTTCCCCTGGAGTGTGCCCCGTGAGTTCCGGATGTTCAGGTGAACTA TATTATGTTTCTTATAAAACTCTGTTATTCAGAGATTGGCAATGCATATT CACACAACAGCAGTAGGAGTACGACTACATTCAAATACATACCAGGTACT ATAAAATAGTACATGCATCACAAGCACATTGGATTGGAGTTTTTTTTTTT CCTTACCTCTTCCGACCGACCGGCCTTATCCAGATCACCCCATCGTTCCA CCGGTACGCATTATACCTCCGACCTGCATCACGTTTTCAGGGTTCATTCA GCACACCCGCAGCTCGCTGATTTATCGGATTTTGCTTACTCACGCTCTAG CACTAACCGCGGCGGCGAAAACAGGGAGTTGACTCGGTCAGGGTTTGAAT CCGGGATCTCAGCGTTACCGGAACGTTGGTTTTGTCGGATAGCCACGGTA GAGCGAATTGCGTCTCACCGTTCGTTGCATCGCGATCGCGTCTCACGATC ATCTCCCCGACCCGCTCGCACTGGAATTCGTTTTCACGCCGTTCGTTCTC CAAGGATGGGAATGAAGAACGACAGAGTCGTCAAGTGGACAAACGAAGGC ACGGCGCCAACTTACGTCGGGCTTGCGGCGCCTTTGCCTGGCAAGGTCAT CCCCGTCAACTTGCTCCAGTCGGGAGACCTCCTCGCCAAGCCGCAGATGT TTCTTTGCAGGTGTATGTGACTTGTGAAGTGGCGTGACATGATACACGCT GTCGAAATGCACGCCGCGCGGTGAACGACGGTAGTGTCTTGTAGCTCGTT TCTATCGCGAGGCGCGGCGAGGCGATGTGACTCCGCGGCTGGGATTGGCC ACCTTCGCAATGCACAACTGCTGTAATCATGAGCATGCGCTGCTATTATG GTTGTCGGGCGAATCAGGTCGGTACTTACATGTACGTCCGGTCCTATTAA TAGTGTACAACCAATACATAACTGGCCGCGGTTTTAGAGTTAACATACCG CAGCTGATGCACCGTGAAGCGTCCCTGCTCGTATCGCCGTATCTGGCGAA GGACTCGGCAGGTGTTTGTCGAGAAGCGAGAGCTGTTCCGAGCAACGCGA CCTTCCACCGCTTGGCTTGATGCTGCTGCTGACCTTTCTCTGCCCGCCAT CCTTCGCGTGTGGCGGTGCTTCTTGTTCCCAGCTTCACAAGCAATCAATT GTCTGCGTCGCGGTTGCGGCTTACGCCGGAGGGCCCATTCCCGCAGCACA ACATCGACATGCGAAAGATACAAGGCTCTGGAATGTGCTATATTCAAGCA GGTACGCCATAGCTGCGGATATGATGGGCGAAATTGTGTCACTTAATACG GCTATTTAACGATATATAGTAAAGGAATTTTGAAGCCGAAACGAAGTACG CGAATTTCCGCGAGATACTTATTGCCTTGCTCACAGAGTTAAGACAAAAA CACGCGAGCTGTATAACTATTTAGTATTTAGTCTAGAGACTTCGGCACAG TTTTTTTCACGCCCTGCCCATGCTGTTCGCGAACTAACGGAGCCGATATA TAATTTTGGGGGGGCTCCCTACCGCAAAGCGCACAACACAGGCGTAGCCA TGGCCACCTACTAGTAGCTGCGATTTGGTCGGTCCTGTAGGTGGCTTTGG TCGTGCAACCCCCCCAACGCAGACTGAATGCGCTCGTGTGTTTTGCTATC GGAGGCACCCCAGAGAAATCAGCAAACAAGTCGACATAACCCTGTTCTCT CTCTATCTAGATAGGAAGAAATCGTCTACCCCAGCCTTGAAGTATGATGA CATTTTGGTCCACCATTGCTGTCTGTCGGCCGGAAAATACCGTTTGTCAA GGTGGGGCGGCGGTGCAAAAAACGTTGGGGCGCTCGGAGACGATGGTGGC TGAGATAGGGTGCGTGGCAGCGATTTCCGCGTCCTGCAAAATCGTCGCGG AAGAACACACCGGGTTCGTTCGCGAACCGCCCTACACTCAGGGCTTCTCC GTCAAAATTACCGGTAAGAAGTCGCACGTTGGCACAGATACTCCAGGGCA CTTGCGCGATTGCACCTGTTATTCTGTATTGACTTTCCTCTTTTCAACAT TCTTTTTACCAACTTCTCCAGCTACCGGACAGCCGTGTCCTCTCAACTTC CCGTCTCCCCTCGGGTCGTAGCGTGGAGTTTTTTGCGGCGCAAGCTCAAA GGATTTTTGTCTGATTTACGCGGAGTTTTTGCTGTGCGTGGTGTGCGGTC GTGCGGGTGCGGGGGGGCTACTGTGGGTCTTTCGATACCCTTTTGTTGCT CGCCGTTCCTCCGAGCGCGAAGCAGCCGCGTCCCACGTCATGTGTACAAA GACCCCTACGCTCAAGAAGCAAATCCGCTCCCAATCCAACCGACAGGTCC CGGGACCGTTTTCATACAATCGACGCACGCCGGACGCATGTCGAGGGATC GGATGGCAGTGAGAGCGGGAGGGGCTGGGGGCGACATGGTGAAAGCAGCA GCAATTACCGTCGGTATCTTGGTGTTGTTGTATGCGCTCGTGGACGTTGA GTACTGACCAAATCCCGATAGGTCTTGGGTAACGGTATGCTAGGGGCCAA GATCTCTCCCGCTTGTCGGAGTGAAACGGTGAACCGGCAACCGCTTGCGA GAGACGGGCGAATGAAAGGACTTAAGACACTGCCACACTTGTACAGCTCC AATAGATTTTTTTCTCCGGTGGTGTTTGTGTAGGGACTACCGCGGGCCCG GCTGGTGTGTGATGTGATGCTGCTCAGGTCAACGACTGTAATATCAGAAC GATTACGCTCTTCCACGCACGCCGCCTTCGTGAGTGGCATCAGCGTGGTG GTCACTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1080:9944..13951-

>mRNA_S-dermatodea_contig1080.541.1 ID=mRNA_S-dermatodea_contig1080.541.1|Name=mRNA_S-dermatodea_contig1080.541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at S-dermatodea_contig1080:9944..13951- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGAGGCGTCGGCTGCACCCTCGCCGGCTAGCACGGATTCGACTCC
CCGATTTCTTTCGCTCGGGGATGGGAACGAAGTACTTCAAGTCGCTCTCG
CTCCAGGCGACTCCATTCTGGCCGCCGAGCGCGCCTTTTGCTACAGAGGA
TTGGGATTGCAGCTGGAAGCATACCCCGCCAACACCGGGGCGCTGGGGAG
GGCTCTGGGATGATGGACGAGGCGTCGGCTGCACCCTCGCCGGCTAGCAC
GGATTCGACTCCCCGATTTCTTTCGCTCGGGGATGGGAACGAAGTACTTC
AAGTCGCTCTCGCTCCAGGCGACTCCATTCTGGCCGCCGAGCGCGCCTTT
TGCTACAGAGGATTGGGATTGCAGCTGGAAGCATACCCCGCCAACACCGG
GGCGCTGGGGAGGGCTCTGGGATGGATGGGAATGAAGAACGACAGAGTCG
TCAAGTGGACAAACGAAGGCACGGCGCCAACTTACGTCGGGCTTGCGGCG
CCTTTGCCTGGCAAGGTCATCCCCGTCAACTTGCTCCAGTCGGGAGACCT
CCTCGCCAAGCCGCAGATGTTTCTTTGCAGGATGGGAATGAAGAACGACA
GAGTCGTCAAGTGGACAAACGAAGGCACGGCGCCAACTTACGTCGGGCTT
GCGGCGCCTTTGCCTGGCAAGGTCATCCCCGTCAACTTGCTCCAGTCGGG
AGACCTCCTCGCCAAGCCGCAGATGTTTCTTTGCAGCTTCACAAGCAATC
AATTGTCTGCGTCGCGGTTGCGGCTTACGCCGGAGGGCCCATTCCCGCAG
CACAACATCGACATGCGAAAGATACAAGGCTCTGGAATGTGCTATATTCA
AGCAGCTTCACAAGCAATCAATTGTCTGCGTCGCGGTTGCGGCTTACGCC
GGAGGGCCCATTCCCGCAGCACAACATCGACATGCGAAAGATACAAGGCT
CTGGAATGTGCTATATTCAAGCAGGTGGGGCGGCGGTGCAAAAAACGTTG
GGGCGCTCGGAGACGATGGTGGCTGAGATAGGGTGCGTGGCAGCGATTTC
CGCGTCCTGCAAAATCGTCGCGGAAGAACACACCGGGTTCGTTCGCGAAC
CGCCCTACACTCAGGGCTTCTCCGTCAAAATTACCGGTGGGGCGGCGGTG
CAAAAAACGTTGGGGCGCTCGGAGACGATGGTGGCTGAGATAGGGTGCGT
GGCAGCGATTTCCGCGTCCTGCAAAATCGTCGCGGAAGAACACACCGGGT
TCGTTCGCGAACCGCCCTACACTCAGGGCTTCTCCGTCAAAATTACCGGT
CCCGGGACCGTTTTCATACAATCGACGCACGCCGGACGCATGTCGAGGGA
TCGGATGGCAGTGAGAGCGGGAGGGGCTGGGGGCGACATGGTGAAAGCAG
CAGCAATTACCGTCGGTATCTTGGTGTTGTTGTATGCGCTCGTGGACGTT
GAGTACTGAGTCCCGGGACCGTTTTCATACAATCGACGCACGCCGGACGC
ATGTCGAGGGATCGGATGGCAGTGAGAGCGGGAGGGGCTGGGGGCGACAT
GGTGAAAGCAGCAGCAATTACCGTCGGTATCTTGGTGTTGTTGTATGCGC
TCGTGGACGTTGAGTACTGA
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