mRNA_S-dermatodea_contig10797.535.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10797.535.1
Unique NamemRNA_S-dermatodea_contig10797.535.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10797.535.1 vs. uniprot
Match: A0A6H5K608_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K608_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.510e-40
Identity = 91/125 (72.80%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    1 MLQHVQGPAGRASATLLKLIREYLNVERSFAGVDMEDSLKTLRKTHEGEEATKVYEAFRSHAAIGRKNRLLLELLDDIRQANAEAKAFSSESK------EALEADENDAAAPS-LPTFAAGASVD 354
            +LQHVQGPAGRASA LL+LI+EYL VERSFAGVDMEDSLK LRKT+EGEEA KVY+AFRSHAAI RKNRLLL LLDDIRQANAEAKAF S+ +       A  A++   AAPS LP  + GASVD
Sbjct:  689 LLQHVQGPAGRASAALLQLIQEYLVVERSFAGVDMEDSLKALRKTYEGEEAIKVYDAFRSHAAIHRKNRLLLTLLDDIRQANAEAKAFLSKHRGGGLESSAGAAEDGLPAAPSALPALSGGASVD 813          
BLAST of mRNA_S-dermatodea_contig10797.535.1 vs. uniprot
Match: D8LHP3_ECTSI (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHP3_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 8.850e-40
Identity = 90/125 (72.00%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    1 MLQHVQGPAGRASATLLKLIREYLNVERSFAGVDMEDSLKTLRKTHEGEEATKVYEAFRSHAAIGRKNRLLLELLDDIRQANAEAKAFSSESK------EALEADENDAAAPS-LPTFAAGASVD 354
            +LQHVQGPAGRASA LL+LI+EYL VERSFAGVDMEDSLK LRK +EGEEA +VY+AFRSHAAI RKNRLLL LLDDIRQANAEAKAF S+ +       A  A++   AAPS LPT + GASVD
Sbjct:  881 LLQHVQGPAGRASAALLQLIQEYLVVERSFAGVDMEDSLKALRKAYEGEEAIRVYDAFRSHAAIHRKNRLLLTLLDDIRQANAEAKAFLSKHRGGGLESSAGAAEDGLPAAPSALPTLSGGASVD 1005          
BLAST of mRNA_S-dermatodea_contig10797.535.1 vs. uniprot
Match: A0A0B4L7U5_9STRA (Acetyl-CoA carboxylase (Fragment) n=1 Tax=Nannochloropsis oculata TaxID=43925 RepID=A0A0B4L7U5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.500e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   10 HVQGPAGRASATLLKLIREYLNVERSFAGVDMEDSLKTLRKTHEGEEATKVYEAFRSHAAIGRKNRLLLELLDDIRQANAEAK 258
            +V G  GR    LL ++R+YLNVER F+G   +D ++ LR+ H GE    +Y+  RSHAA+ RKN LLL LL+ I  A ++A+
Sbjct:  899 YVNGIPGRTVVALLGVVRQYLNVERHFSGYQYQDVVQRLRRAHSGE-LHLIYDYCRSHAALPRKNALLLTLLEHISVAASKAR 980          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10797.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K608_9PHAE3.510e-4072.80Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
D8LHP3_ECTSI8.850e-4072.00Acetyl-CoA carboxylase n=1 Tax=Ectocarpus siliculo... [more]
A0A0B4L7U5_9STRA6.500e-1145.78Acetyl-CoA carboxylase (Fragment) n=1 Tax=Nannochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10797contigS-dermatodea_contig10797:2903..5632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.9e-35
Seed eggNOG ortholog2880.D8LHP3
Preferred nameACACB
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01946,ko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04920,ko04922,ko04931,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04920,map04922,map04931
KEGG ModuleM00082
GOsGO:0000166,GO:0000902,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001101,GO:0001650,GO:0001676,GO:0001894,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0003989,GO:0004075,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006082,GO:0006084,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006163,GO:0006164,GO:0006355,GO:0006606,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006853,GO:0006869,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006998,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009374,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010256,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0010876,GO:0010883,GO:0010884,GO:0010906,GO:0012505,GO:0014070,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015833,GO:0015849,GO:0015908,GO:0015909,GO:0015980,GO:0016020,GO:0016043,GO:0016053,GO:0016421,GO:0016874,GO:0016879,GO:0016885,GO:0017038,GO:0017076,GO:0018130,GO:0019216,GO:0019217,GO:0019218,GO:0019219,GO:0019222,GO:0019432,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019842,GO:0019867,GO:0019899,GO:0019900,GO:0019904,GO:0022607,GO:0030554,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031406,GO:0031667,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0031999,GO:0032365,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032810,GO:0032870,GO:0032879,GO:0032989,GO:0033036,GO:0033218,GO:0033293,GO:0033365,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034285,GO:0034504,GO:0034613,GO:0034641,GO:0034654,GO:0034694,GO:0034695,GO:0035257,GO:0035337,GO:0035383,GO:0035384,GO:0035639,GO:0036094,GO:0040008,GO:0040029,GO:0042175,GO:0042221,GO:0042493,GO:0042592,GO:0042759,GO:0042802,GO:0042886,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0043933,GO:0044042,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045017,GO:0045184,GO:0045540,GO:0045833,GO:0045893,GO:0045922,GO:0045927,GO:0045935,GO:0046320,GO:0046322,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046620,GO:0046622,GO:0046890,GO:0046907,GO:0046942,GO:0046949,GO:0046966,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050662,GO:0050692,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0050994,GO:0050995,GO:0051094,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0055086,GO:0055088,GO:0055114,GO:0060249,GO:0060255,GO:0060420,GO:0060421,GO:0061024,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070542,GO:0070727,GO:0070887,GO:0071229,GO:0071310,GO:0071322,GO:0071324,GO:0071329,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072594,GO:0080090,GO:0090181,GO:0090407,GO:0097009,GO:0097066,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:0106118,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901654,GO:1901655,GO:1901681,GO:1901700,GO:1901701,GO:1902001,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1903825,GO:1905039,GO:1905952,GO:1905954,GO:1990542,GO:1990837,GO:2000026,GO:2000112,GO:2001141,GO:2001293,GO:2001295
EggNOG free text desc.acetyl-CoA carboxylase
EggNOG OGsCOG0439@1,KOG0368@2759
EC2.1.3.15,6.3.4.14,6.4.1.2
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10797.535.1prot_S-dermatodea_contig10797.535.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10797 2903..5632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.3313303-CDS-S-dermatodea_contig10797:2902..30041622924173.3313303-CDS-S-dermatodea_contig10797:2902..3004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10797 2903..3004 -
1694079067.8991055-CDS-S-dermatodea_contig10797:2902..30041694079067.8991055-CDS-S-dermatodea_contig10797:2902..3004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10797 2903..3004 -
1622924173.3405032-CDS-S-dermatodea_contig10797:3751..39091622924173.3405032-CDS-S-dermatodea_contig10797:3751..3909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10797 3752..3909 -
1694079067.9148154-CDS-S-dermatodea_contig10797:3751..39091694079067.9148154-CDS-S-dermatodea_contig10797:3751..3909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10797 3752..3909 -
1622924173.3527918-CDS-S-dermatodea_contig10797:5538..56321622924173.3527918-CDS-S-dermatodea_contig10797:5538..5632Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10797 5539..5632 -
1694079067.925401-CDS-S-dermatodea_contig10797:5538..56321694079067.925401-CDS-S-dermatodea_contig10797:5538..5632Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10797 5539..5632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10797.535.1

>prot_S-dermatodea_contig10797.535.1 ID=prot_S-dermatodea_contig10797.535.1|Name=mRNA_S-dermatodea_contig10797.535.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MLQHVQGPAGRASATLLKLIREYLNVERSFAGVDMEDSLKTLRKTHEGEE
ATKVYEAFRSHAAIGRKNRLLLELLDDIRQANAEAKAFSSESKEALEADE
NDAAAPSLPTFAAGASVD
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mRNA from alignment at S-dermatodea_contig10797:2903..5632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10797.535.1 ID=mRNA_S-dermatodea_contig10797.535.1|Name=mRNA_S-dermatodea_contig10797.535.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2730bp|location=Sequence derived from alignment at S-dermatodea_contig10797:2903..5632- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAGCACGTCCAAGGGCCGGCCGGCAGGGCCTCCGCCACGCTGCT CAAGCTGATCCGAGAGTACCTCAACGTAGAGAGGAGCTTCGCAGGTGCGG CCTTTACGAGACAGGGCCGCTTTGTGCCTACCGTCGTGCTTACTGTTGTG CACCCGCGTGTACTCTGTGTACCTGGTATCGTACGTTGCGCGCTGGCGTG GTGCGCGCGTTCGGTCGTCGGTCAAGCTCGACGCGCGACATCAGCGACCC TTGCTTTAACCCTTTTGGTACTAGCCCCCTGTTTGGAGCGCCTGTTAGCA CGCAATGAGGCGTACTTGAAGCGGGTTATGACGCAGGAATGAGAGAGAAC GGAGAACAAGGGAAACGGGGATGTAACTGTCGACTGGCATCGAGAGAGTT TTTGGTCGTTTCGGAGAGCCCTATTGATTTCTAATACTAATTTAATACAG TAGTACTGTACCAAAGGGTTAACGAAACCGTCGGTTGCTGCGACGATCGA CATATTTTATTTTCGTTCTCTTTTTTTATCCTATTCGCTGCGCGCGGCGC TGCTGGTACCTATCCGTCGTGCTGTCAAGAGCCGCTCTGGTTTTGCTCCA GCTCTCTTGCCGCGTATTAATTTAACATCGAGCTACGATGTACTGTGCCT GTTGCCGTTGTGTTTATGCTGTATGCCATGTATCTTCGTCCAGCTTTGAT GGAGTCGTATGTAGAATGCTCTCACTTCGCAAAAGGCAGATTGCCCCAGA AAGGAAATACGAGGTCCCTTGGAGTAAGAAATGCGGTAGCACGCTCGCAG AATACTGACTTGAGAGTTCGCCGAGGTACGTCCTGCTGACCCAAGTATTT TACTCGGGGAGTCGCCTGACCCATGTTCCACAAAGGACATTTTCTTTCGG GCGGGCGATGAAATCAATCGTCTCGGTTTTGTGTACAGCAAAATCTCCGC CCTGGTCCTGTCCCGATGAGTTATGCATTGTATTGCATACTTTCTGTGTT CTGTTTTTTATTTTTACAAAAAAGGAAATACAAGTTGGGTATGTATCTTG GCACTACTTTTGTTGAGAAAGCCGTTGGTTAGGAGAGAGTGAATTGCCTG GTACGAGTGTCGGCGCGCGAATACGTGTAATACCTCCCACAGTCCAGTGC ATGGAGACGAGTTACAAGGGTTTGTGTGCATGGCATCTTCACCACCCCCC CCCCCACCCCCCCTCCCCCCCGTTTAGACAAGAGAATATATAAAATAAGG TATTTTCGAACGAGACACTCACTGGTGTTGAGGTTCGAGTTCCTCTCTGG TATGAAGGGATCGAATCCCAGCGTGTGTCCTCAGTGATGATAGGTATGAT ACGTGTCGAGCTATGCTAGATGTTATCACTACCCACCCCCCTACTCCCAC CCCCCCCCCGAAAAACAAACAAACGTAACTTACACCGGACGGCACTATTG TTCAAAGCCTCTTTAATGGTAAGGTATCGCAGCCTACACCACCCCCCCCC CCCCCCCTGGATATAAAAACAAGCGCTATCGAACGAGACCCCGCCCCCCA GCCCCCCAGGCCCCAGAGAAGGTGCAGACTCCTACCGACACAATCAGACG CGTATTCACGGACATGACATCTTCATCCCTCTCCTCCCTTCTCCCCTGAC TGACCCCACCCACCCCTCATCCCCCCGACCCCCGACCCCCGGCAACGCGA TGTTATTTTCGCCTCGACCGCAGGTGTCGATATGGAAGATTCCCTTAAGA CTCTGCGCAAGACCCACGAGGGGGAGGAGGCGACGAAGGTATACGAGGCT TTCCGCAGCCACGCCGCCATCGGGCGCAAGAACCGCCTGCTGCTTGAGCT GCTGGACGACATACGCCAGGCCAACGCCGAGGTGAGGAGTGCTCTTTTGT TTTTGTGTTGTTGTGAGTGTGTGTGTGTGTGTTCGTGGTTGGTTTGTCAC GAACCACGACTGACGGACCGGCCTCATATCCGAATCCTCGTCTCCCCCGT CTGTTTTGTTTTTGTTTTTGTGTTTTGGTTTGTGTTTGGTGTGTTTTTGT GTTCTTGTGTGTGCGTGATTGTTTTTGTTTTTTGTGAGTGGTGTTTTTTG TTTTTGTGAGTGTGTTGTGTTATTACTATTAATAAGTGTTTTTTGTTGTA CTTGATTACGCCGTACCATAGGGGGGAGGGACCCTGCAGAACGACTTGAG CTTCTTGCACTTCCGGTCGGAGCGCGGTTCACGATATCTACCTGCTGTGT TGATTCTTTTTGGCGCCTTTTTGAGGACTCGATGCGCAACTAACAATGTC GGAAACCGTATTCTATGCCCTTATTCAAAACAAAGGAAGAACGCAAGCGT TTACAGTTCATATTTGACAATGTTTTGTTTTTGATTATTTTGTAAAACAC ACCGGGCTAAGGCTTTCTTCTCCGAGTCCAGTAATAAAACATGCAACGAA AACCAGCGTTACACAGCTTTTGTTTTCCCTGAAAGCACCAGGCCAAGGCT GTTCTCCTCCGACGTTACAATAAAAAAAATACGAAAACGAAAACGAAAAC GAAAACAAGCATTACATAACATACATACTTGTACTGTTTTTGTTGTTTTT GTTATTTTTCCTCAAAACGCGCTGGCAGGCTAAGGCTTTCTCCTCCGAGT CGAAGGAGGCTCTGGAGGCGGACGAGAATGACGCCGCGGCGCCGTCCTTG CCAACGTTCGCTGCGGGCGCTTCGGTGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10797:2903..5632-

>mRNA_S-dermatodea_contig10797.535.1 ID=mRNA_S-dermatodea_contig10797.535.1|Name=mRNA_S-dermatodea_contig10797.535.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig10797:2903..5632- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAGCACGTCCAAGGGCCGGCCGGCAGGGCCTCCGCCACGCTGCT
CAAGCTGATCCGAGAGTACCTCAACGTAGAGAGGAGCTTCGCAGATGCTC
CAGCACGTCCAAGGGCCGGCCGGCAGGGCCTCCGCCACGCTGCTCAAGCT
GATCCGAGAGTACCTCAACGTAGAGAGGAGCTTCGCAGGTGTCGATATGG
AAGATTCCCTTAAGACTCTGCGCAAGACCCACGAGGGGGAGGAGGCGACG
AAGGTATACGAGGCTTTCCGCAGCCACGCCGCCATCGGGCGCAAGAACCG
CCTGCTGCTTGAGCTGCTGGACGACATACGCCAGGCCAACGCCGAGGTGT
CGATATGGAAGATTCCCTTAAGACTCTGCGCAAGACCCACGAGGGGGAGG
AGGCGACGAAGGTATACGAGGCTTTCCGCAGCCACGCCGCCATCGGGCGC
AAGAACCGCCTGCTGCTTGAGCTGCTGGACGACATACGCCAGGCCAACGC
CGAGGCTAAGGCTTTCTCCTCCGAGTCGAAGGAGGCTCTGGAGGCGGACG
AGAATGACGCCGCGGCGCCGTCCTTGCCAACGTTCGCTGCGGGCGCTTCG
GTGGACGCTAAGGCTTTCTCCTCCGAGTCGAAGGAGGCTCTGGAGGCGGA
CGAGAATGACGCCGCGGCGCCGTCCTTGCCAACGTTCGCTGCGGGCGCTT
CGGTGGAC
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