mRNA_S-dermatodea_contig10785.530.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10785.530.1
Unique NamemRNA_S-dermatodea_contig10785.530.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10785.530.1 vs. uniprot
Match: D8LD93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD93_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-10
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   46 VRFNYQVRVVLVPSRSELEFLKGDIWWAEDDYFEFRREYILAMRALAQGGPAEQESTLEDTSCEDTPQV 252
            VRFN+QVRVVLVPSR EL  L  ++WW  +DY EFRRE++ AMR  A        + +E+ + ++TP V
Sbjct:  105 VRFNHQVRVVLVPSRKELRPLIEELWWGTNDYVEFRREFVQAMREAAA-------AEVENRANQETPSV 166
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BLAST of mRNA_S-dermatodea_contig10785.530.1 vs. uniprot
Match: A0A6H5KW42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW42_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.140e-10
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   46 VRFNYQVRVVLVPSRSELEFLKGDIWWAEDDYFEFRREYILAMRALA 186
            VRFN+QVRVVLVPSR EL  L  ++WW  +DY EFRRE++ AMR  A
Sbjct:  111 VRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMREAA 157
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10785.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD93_ECTSI1.040e-1049.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW42_9PHAE1.140e-1063.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10785contigS-dermatodea_contig10785:1897..5270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002060.1
Exons2
Model size419
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.0741646-CDS-S-dermatodea_contig10785:1896..20481622924173.0741646-CDS-S-dermatodea_contig10785:1896..2048Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10785 1897..2048 +
1694079067.7287788-CDS-S-dermatodea_contig10785:1896..20481694079067.7287788-CDS-S-dermatodea_contig10785:1896..2048Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10785 1897..2048 +
1622924173.0878086-CDS-S-dermatodea_contig10785:5005..52701622924173.0878086-CDS-S-dermatodea_contig10785:5005..5270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10785 5006..5270 +
1694079067.7417135-CDS-S-dermatodea_contig10785:5005..52701694079067.7417135-CDS-S-dermatodea_contig10785:5005..5270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10785 5006..5270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10785.530.1prot_S-dermatodea_contig10785.530.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10785 1897..5270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10785.530.1

>prot_S-dermatodea_contig10785.530.1 ID=prot_S-dermatodea_contig10785.530.1|Name=mRNA_S-dermatodea_contig10785.530.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
AGDAAVPPAKPPARCVRFNYQVRVVLVPSRSELEFLKGDIWWAEDDYFEF
RREYILAMRALAQGGPAEQESTLEDTSCEDTPQVQLETPTLHSLPISSPP
PSQPHHGPLSRKAPLQPPSGVVLAATISPYALAAAAAAS
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mRNA from alignment at S-dermatodea_contig10785:1897..5270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10785.530.1 ID=mRNA_S-dermatodea_contig10785.530.1|Name=mRNA_S-dermatodea_contig10785.530.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3374bp|location=Sequence derived from alignment at S-dermatodea_contig10785:1897..5270+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCGATGCCGCGGTACCACCCGCGAAGCCGCCTGCGCGTTGCGTCCG
CTTCAACTACCAAGTCCGAGTCGTTTTGGTACCCTCAAGGAGCGAACTCG
AGTTCTTGAAAGGAGACATCTGGTGGGCTGAGGATGACTACTTTGAGTTC
AGGTGAGAGCGGTCAGAACGCGTTGCGGGCGTGGGGTGGGGGGGGTGGCT
GGCTGGCTAGCAAGGTTAGGGGGGCGGGGGGGGGGGCGTAGGAGGGGGTA
GCGAGCTGTGTTCACGAGCGGGGTGGTCGTCTCTTTTAGTCCGCAGACCC
TGTGGCTGTGAGTCATGTCTTTTTGATAAATCTTGGGTGAAGGCGAAATG
CCACACATCAGCAGGCAGCGCATGTCTCTACAGTTAGAGTGCCACCGCGC
CCCTGCTTGCAAGGCATGTAACACCACAAAGCAACGGATTAGCGTGCTCT
TCCCTCTGCCAAGCTAAACGGTCACCGTCCGCAGATTGAGGCGACATGCG
CTGGCCACCCAGCCGATCCGATCCGATCCACGGCTAAATCCGCCTGCCCC
CCAGCCTTCTCTCTTTATATCTCAGCTTATCTCGTTTATTTATTTGGGTT
TGTTTCTGTTTTTTGGGATCTTCTGTTTGGCGGTGATGCAGAGCCAGCAC
CTGTCTTGCCTACCCCCCCCCGCCCCCCAACCCCCCCCAGCCCCCCCCAC
CCCGCACCCCCATGCGTGTGTTCCCTGCGGCTGAGATCAACGATGGGTGT
AAATCACGAGATGGCCCGTTTGATACTGCTCCTGTTCTCCTTGCTCTAGA
TCGGAACGCGCTGACGCTGCCATGGCTCGCTACGTTTGGCCCCAACGTTC
ATTTCATTTTTGTGTGAACATGAAAGTTTTTTTTTTGAGTCTTGAATCCA
GTACAGCATATAGAGCAGGTCTGATAAAATATATACTTGTACTGTACCAG
ATAATATTTGTTACAACTACTTGTAGTAGTATTATACTTGTTTTGAGAGG
GACCGTTGCCGTTCACCTCGCACTGTCACGGTCGGCCGCACCAATTCCAC
ATGCGAAGTAAAAATGCTTATCATACTTACTGTACGCTGTCTGTACTTAT
CATAGCGCTCTATAAAAGAGCTATTAATAGAGCTACAGTATATATAATCC
GCCGTTGATGGTGCTGTGCTCTATCATACCGGTATTGTTTTTCGTGTCCC
ACCACAATCCTCAAAGAGCCATATTCTCAATCTACTACTCTCCTCCTCCT
GGATCCAGCAGCCTTGGAAGCATGGAAGCGAGCGACCAAAGAGACGAGAG
CCATATTAATAGCTTTTTTATTGGCGAAAAAAAAAGAAGCTGTCCGAACA
TTCGACCCGAGACTTCAACGAGAGCAGAAAATCGAATCTTGAACCCCGTC
ACCATGATGAGTCACGTGGACACGTAGCATCGGTCTCGGGGAGAGGAAAA
CGACAACGTAGCCATGAAATTAATGATGAAACCGAGATCAGCAGATGGGA
TGCAGCCCATCATTTTTTTTTCCTCGCTATCATAGGGTTTGCCATGCGTG
TGGGGTAAGAGGATGCTACATACATGTGGTGATACGAGCAGCTAAAACGC
ACCGCAGATGGGATCGGGGCGTCGGGACTATTGATATACTGTATAGCTAA
CCCGAGATCGAGGCAATCGGGCGTGTGTGTGTCCCCACAAGGCCTGACAC
GTTCTGTCCGCGAATAGTATATTATAGTAGGGGTCTGGAATCAGGTAAAA
ATGCGAGTTCAAGCGTTTGCAACTTGTACTTGTAGTTGGGGAGCGTTGAT
TGTAACAGAGCTCTAAAGTACTACCTATATGATACTGACTGCAGTACGAT
AAAAGTCGTGTAGAAGCTTAAAGTACTACAGTACTACAGCAGTTGCATAC
AGTATTATATTTATTATATTGGAGGTAACTAACTGTTGGAGCTTATACAA
GTACTCGTATGTACTACAGTGTATACATATACATATGATACTGCTGTAGT
AAAAGTATAAAAATACCTGTATTTTTGTATTTGAGTATTTTATTGTATGT
ACCTGCTCCTGTGTTGTACTTGTACTTCGTATTTTGATAGTATTAATTGT
ATGTGGTCTATGTACAATAGTATAATATACTAAGCAAATGGAAAGCATCC
CCCCCGCATTGCATGTTTCACGTTCTGTCTCTCGGCGTTTAGTACAGTAC
CCTCACACACCACACACCGTGCTGCTGTGGTTCTTTAAATCAACCCGACC
GGGTCACTTTTCCGCTCGACGTTTCTCTGACGTTTCATCCAACGATGCAC
ACCCCAAAGACCCCGGTACTTTTTGCACTCACCTGTTGAGGCTTTTCGGC
GCCCCTTGGCGTGTTCTCCCACCCATAAAAACCCCGTGAACCTACATTTT
CCTCACCCGACCTTGGCGCAAGGAAGTGAGAACTCTTTCTTTTGTATGCA
TAGAGCTCTACTTGTATATGATTATGATTGTGCATGACAGAGGAGGAAGG
CAAAGACGGCGGCAGTACTTGTAGCGAGTTGCCGGCACTACTTGCTTGTA
TGCATATTAATAATAGCACGATCCCGTCAAACTCAAGTTGAACCCCCGTC
GCCGATTGCCCGCCGAAGGCTGGCGGTCACGAACCCCGTATGATACTTCC
TCTCGTACCCTTGAACACCCCCCCGGACGCGTGGTCAATGGTCTAACAGC
TAAGGCATGCAAAACGTGAGTACCCCCCCCCCCGCGCACGGAGATCAAAT
TCCTTTTGCGGTACTAAGAGTATATAGTCACGCCTACTGAATGTGCAACA
TTTTGTTGTCCGGTATGTCTAATCAACCCATGGCATATCGTTTGGCGTCG
CAAACGCAAAAATGATGACCAGCAGCTGGTATCGTGCTTGTCAAACGCAG
CCTGGCCAACGAAAATCCAGCGTATCGCTCCGTCCCGGCATTATGGGACG
CGTGATCTATGTCCGTATGGATACATGTATTTAACATAAGTACACCCCCT
CCACCCCCCCCCCCCCACACACACACTCAATTACTCCCTTTGTTGTATTT
TCACAACGACAACCGCGCGCGCCTCCAAATCTACCCCTCGAAAAAATCAA
AACGTACAGGCGCGAGTACATTCTTGCCATGAGGGCGCTGGCACAGGGAG
GGCCTGCGGAACAGGAATCCACGCTCGAAGACACGAGCTGCGAAGACACG
CCGCAAGTCCAACTCGAAACCCCGACGCTGCATTCGCTTCCCATCTCAAG
CCCCCCACCATCGCAGCCCCACCACGGTCCCCTGTCGCGCAAAGCGCCGT
TACAGCCTCCCTCGGGTGTGGTGCTCGCGGCCACGATCTCGCCGTATGCC
CTTGCGGCCGCGGCGGCAGCCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10785:1897..5270+

>mRNA_S-dermatodea_contig10785.530.1 ID=mRNA_S-dermatodea_contig10785.530.1|Name=mRNA_S-dermatodea_contig10785.530.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig10785:1897..5270+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCGATGCCGCGGTACCACCCGCGAAGCCGCCTGCGCGTTGCGTCCG
CTTCAACTACCAAGTCCGAGTCGTTTTGGTACCCTCAAGGAGCGAACTCG
AGTTCTTGAAAGGAGACATCTGGTGGGCTGAGGATGACTACTTTGAGTTC
AGGCCGGCGATGCCGCGGTACCACCCGCGAAGCCGCCTGCGCGTTGCGTC
CGCTTCAACTACCAAGTCCGAGTCGTTTTGGTACCCTCAAGGAGCGAACT
CGAGTTCTTGAAAGGAGACATCTGGTGGGCTGAGGATGACTACTTTGAGT
TCAGGCGCGAGTACATTCTTGCCATGAGGGCGCTGGCACAGGGAGGGCCT
GCGGAACAGGAATCCACGCTCGAAGACACGAGCTGCGAAGACACGCCGCA
AGTCCAACTCGAAACCCCGACGCTGCATTCGCTTCCCATCTCAAGCCCCC
CACCATCGCAGCCCCACCACGGTCCCCTGTCGCGCAAAGCGCCGTTACAG
CCTCCCTCGGGTGTGGTGCTCGCGGCCACGATCTCGCCGTATGCCCTTGC
GGCCGCGGCGGCAGCCTCCGCGCGAGTACATTCTTGCCATGAGGGCGCTG
GCACAGGGAGGGCCTGCGGAACAGGAATCCACGCTCGAAGACACGAGCTG
CGAAGACACGCCGCAAGTCCAACTCGAAACCCCGACGCTGCATTCGCTTC
CCATCTCAAGCCCCCCACCATCGCAGCCCCACCACGGTCCCCTGTCGCGC
AAAGCGCCGTTACAGCCTCCCTCGGGTGTGGTGCTCGCGGCCACGATCTC
GCCGTATGCCCTTGCGGCCGCGGCGGCAGCCTCC
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