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Homology
BLAST of mRNA_S-dermatodea_contig1078.529.1 vs. uniprot
Match: D8LJ12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ12_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 3.260e-9 Identity = 77/174 (44.25%), Postives = 91/174 (52.30%), Query Frame = 1
Query: 499 GAYKNSTPPPVPT--QGRLRR-SAFAAPASG-GYVDSPPEDVTSGRENSEKEARMSRKTAXXXXXXXXXXXXXXXXXEEAEAVRKMQRTIITLEVQLLVKDIVDGACVRAAXXXXXXXXXXXXXXXXXS--------VSASLPPAPHPRLSSTAAHLEQQRPAFFEALWNASGG 984
G STP PV GRLRR +A P G G S + R A E+AEA R+++ IITLE++LLVKD+VD ACVRA XXXXXXXXXXXXXXX S VS+S+ PAP PRLS+TA E+Q +FF WNA GG
Sbjct: 405 GLSSKSTPDPVVQGRTGRLRRQTASPTPVEGLGTSSXXXXXXRSEKAKKSTTGRDREHPAREDAASAERVATLLKAEEDAEARRQLEHRIITLEMKLLVKDLVDTACVRAXXXXXXXXXXXXXXXXNQSSLKWTPLSVSSSVAPAPLPRLSATAVQAERQ--SFFGNFWNAGGG 576
BLAST of mRNA_S-dermatodea_contig1078.529.1 vs. uniprot
Match: A0A6H5L4I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I2_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 7.510e-9 Identity = 73/184 (39.67%), Postives = 96/184 (52.17%), Query Frame = 1
Query: 463 KGLLGALQWNLGGAYKNSTPPPVPTQGRLRRSAFAAPASGGYVDSPPEDVTSGRENSEKEARMS------RKTAXXXXXXXXXXXXXXXXXEEAEAVRKMQRTIITLEVQLLVKDIVDGACVRAAXXXXXXXXXXXXXXXXXS--------VSASLPPAPHPRLSSTAAHLEQQRPAFFEALWN 972
KG+ G+ Q LG + + P + Q R R A + D + +SE++A S A E+AEA R+++ I+TLE++LLVKD+VD ACVRA XXXXXXXXXXXXXXX S VS+S+ PAP PRLS+TA E+Q +FF LWN
Sbjct: 1362 KGVWGSFQRTLGAGLSSKSTPDIVVQRRTGRLARQTVSPTPVERLGTSDSSKSSSHSEQKAEKSTTGGDREHPAREDAASPERVAALLKAEEDAEARRQLEHRIVTLEMKLLVKDLVDTACVRAXXXXXXXXXXXXXXXXNQSSLKWTPLSVSSSVAPAPLPRLSATAVQAERQ--SFFGNLWN 1543
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1538 |
| Cds size | 1536 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1078.529.1 >prot_S-dermatodea_contig1078.529.1 ID=prot_S-dermatodea_contig1078.529.1|Name=mRNA_S-dermatodea_contig1078.529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=512bp
SIDPSPEQVALAAVSFDPSAPEGLREKNLDQLQVERSHTVNDSRLPPAVP
VPSRSAGKSTGGGWGRGRTSSSATGNDGTYGNWGSRRRAMSTTEEGDAGV
AALMVTPTGISSRTSSPLVRTRSGSGAGSSGKGGKWPFSRKKRDGITGEG
KAGKKGLLGALQWNLGGAYKNSTPPPVPTQGRLRRSAFAAPASGGYVDSP
PEDVTSGRENSEKEARMSRKTARKNAAAAERVARRLRAEEEAEAVRKMQR
TIITLEVQLLVKDIVDGACVRAAERASEGLVESSVKSTPRSVSASLPPAP
HPRLSSTAAHLEQQRPAFFEALWNASGGGGERKDRRHTNAGTGDEGAAGS
IWRAGSRDIASAQASGQRTGAGAGLGKEGDTQQEEGFFETLRRKLFDGEK
LRVEEEARKAAAATATHADVASAAPEEMAREEAGTGLGDEESPDPSKATA
TSSAVQSSLKFTPVRAAERSGGDVDGDGDGGGGGASGGSRFLRGKPAAAV
ASAYGARTSRAT back to topmRNA from alignment at S-dermatodea_contig1078:7513..10893+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1078.529.1 ID=mRNA_S-dermatodea_contig1078.529.1|Name=mRNA_S-dermatodea_contig1078.529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3381bp|location=Sequence derived from alignment at S-dermatodea_contig1078:7513..10893+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGATCGATCCCTCCCCTGAACAGGTCGCCCTGGCCGCCGTTTCGTTCGA
TCCCTCGGCGCCCGAGGGGCTCCGCGAGAAAAATCTGGACCAACTCCAGG
TGGAGCGGAGCCACACCGTGAACGACTCGCGCCTCCCTCCGGCGGTGCCT
GTTCCCTCGCGATCGGCCGGGAAATCCACAGGCGGAGGATGGGGTCGCGG
CAGGACTTCGAGTTCGGCGACTGGCAACGACGGGACCTACGGGAATTGGG
GGTCGCGGCGGCGAGCGATGTCGACCACCGAGGAAGGGGACGCCGGGGTG
GCGGCGTTGATGGTGACGCCCACGGGCATATCGTCGAGGACCTCTTCTCC
TCTGGTCCGTACCCGCTCCGGCTCCGGCGCCGGTAGCAGCGGTAAGGGCG
GGAAGTGGCCGTTTTCGCGGAAGAAGCGGGACGGCATCACTGGGGAGGGG
AAAGCTGGCAAGAAAGGGCTGCTTGGGGCGCTTCAGGTGTGGACTTTGTG
TGCGTGTGCGTGTAGGGTGGGTGCGCGGTTGTGTTCATGTGTGGGTGTCG
GAAGCTCGCGGGCGAAACGGACACGCCGGTTTGCGCACGTTGCAGGAGCT
GTGAGCCCAGGCACTTGTAAGCTGTCGCCATGTGTCTAGTTGCGAGGTCT
CCGTCCCGCCGCCTCAGTAGCTACGTACAGCTGGCGCGTCACTGTGTAGG
GCCACTTCCTTGCGAATTTAACGCCGCGTGCCCCACCCCGCTTCAACCAT
CCCGCCCGCTCGCTCTGGTCTGAATCAGTGGAACTTGGGAGGGGCGTACA
AGAATTCCACGCCGCCGCCTGTGCCCACCCAAGGTCGACTGCGGCGTTCG
GCATTTGCAGCCCCGGCGTCGGGGGGGTACGTGGATTCTCCGCCCGAGGA
CGTGACAAGCGGCAGGGAAAACTCAGAGAAGGAAGCGAGGATGTCGAGGA
AGACCGCTCGAAAAAATGCCGCTGCTGCCGAGCGGGTGGCGAGACGGCTG
CGCGCGGAGGAAGAAGCGGAGGCGGTGCGTGCACCCTTCATTTTTTACAC
GTTTATTTGTATGTGTATTTTGTCGTCAACTGTCTGTATGATAACGTTGT
TTTTAGTGTAGTTTAGTCTGCGTTACCTTTGGTTGGTTGGTTGAATTTTG
GGTTTGTAAGTGTTGGGCGGTTCGAGCATGGACCTCGCCAGCGGTCGTCT
GTGAGCTCTTGCTACGGGGTACCGGTTTTGCTCTGTCGAAGCGAAAGAGT
CTGGGTGTTTTTTGTTGGGCTGTTGGGGAAGTATTATACAGTATACGAGA
GGGGGGCGGAGCGGTTTTCACCGCGCCCTGCTGTCGGTCCACGACTCACA
ATTGAAAACGCATTTGACGGCCGAGCCTTTTCGTTCGTTTTAGTCATCTG
TCTGTCTCCCAAGAAACACGGCGAGGCGTGTTCCCAATCATCCGTTGTCG
TGGACACATGCAAAGCCGCACGCACCCTGAACGAGGATATGTGGACTGTG
GTGCACTTCTTGCCCTTGGCCTTGTTTGTGGTCTCTCGATGAGATGACGC
GGCAACACGGGACGCGCCGTATTTGCACCCAATCCTCATACACAACACCG
CCTGATTCCGCAGGTCCGGAAGATGCAACGCACCATCATCACCCTCGAGG
TACAGCTCTTGGTAAAGGACATCGTCGACGGCGCCTGTGTGCGAGCCGCG
GAGCGGGCCAGCGAGGGGCTAGTCGAGTCGTCGGTCAAGGTGAGAGCGTG
GTACACTGCGCGCACGCGTACAGCCCCCCCCCCCCCCCACCCCCCCCGGG
TCCGATCGCTCCTGCGTGGTTGCTCTCTCCCCGACGTGCTTACGTTCGCC
CCACGCGCTCAAACCCCTTGCCCTCACCGACCCCTTGTGTCTCACCACCC
TCCGCGCCACACGCCACATTATTTTGCAGGCTCCTCTTTTCGATATAGCT
GTCAGGCATTTTCCCACCGACCCGAACACAAACACATATTGAATTGTGTT
TTCGCAGCTCCTCCGAGCGTGTATTACAATACTTCGTATGTGCATGGATT
CCATCTCATGAAAACTCTGGGCTTCAACTCGGATTTTTCGAGCGTGTGCC
GTGCGTGCCGTATGATTCCCCCCAAACAAGGTGGTTGTCGCGAAGCTTAG
ACCCTGGTGTTTCACCATGCTATGGAGGGATTCCCGCGCACGGCGGTGGC
AGCAGTAAACACGGCGGCTACCCAGCCCCACCCCCATCCCCCGCCGCAAA
AGCAAATAGAACCCCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCC
CACCCCCCCCCCCCCCCCCCCCCACCACTCCCCCNNNNNNNNNNAGCAAT
GACAGGGTCGGTGGTTAACGTCGGCACGAAGCACAAAGAAAAAAAAAAAA
CCCCCCCCCCCCCCCCCCCCCTCCCCCCCCTCCCCGTTCCCTCCCACCAC
TGTCCCCTGCACGATGCCCCCGGGCACCCTCAGACTTGCTGCCGCCTGCA
CCTATATCGGTCCACGCTCCGTATGTCATGACGACCCACGAAGCAAACCA
ATATTCCGCCGATGATCTCACGTCGAAGTTATACCCAAGATGCTATAATC
AAGCCGCCTTCCCCTGTCCTCCGATCCCCCGCCCCGACACCTCTCTCCCT
TACTCCATATTTTTCTCTCTGTATGCCTGTTTCCTTTTTTCTACCCCCGG
CAGTCGACGCCTCGCTCGGTGTCTGCATCCCTCCCTCCGGCTCCCCACCC
TCGCCTGTCCAGCACGGCGGCGCACTTGGAGCAGCAGCGCCCTGCGTTCT
TCGAGGCCCTGTGGAACGCCAGCGGCGGTGGTGGCGAGAGAAAGGATCGC
CGCCACACAAACGCCGGCACCGGTGATGAGGGTGCCGCGGGATCGATATG
GAGGGCGGGCTCCCGAGACATCGCCTCCGCGCAAGCTTCCGGACAGAGAA
CAGGCGCTGGCGCCGGCCTCGGCAAAGAGGGCGACACCCAACAGGAGGAA
GGGTTCTTCGAGACCCTGCGGCGGAAGCTGTTCGACGGCGAAAAACTGCG
GGTGGAGGAAGAGGCGAGAAAGGCTGCCGCAGCCACAGCCACCCACGCGG
ACGTCGCCTCGGCGGCGCCTGAGGAAATGGCCAGGGAGGAGGCCGGAACG
GGGCTCGGGGACGAGGAATCTCCTGATCCGTCCAAGGCAACGGCGACATC
TTCCGCGGTGCAGTCGTCGCTGAAGTTCACGCCCGTGAGAGCCGCGGAGA
GGAGCGGTGGCGATGTCGATGGCGATGGCGACGGCGGCGGCGGGGGGGCG
AGCGGAGGAAGCCGCTTTTTGCGGGGGAAGCCCGCCGCAGCCGTAGCCTC
GGCTTACGGAGCAAGGACTTCACGAGCAACC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1078:7513..10893+ >mRNA_S-dermatodea_contig1078.529.1 ID=mRNA_S-dermatodea_contig1078.529.1|Name=mRNA_S-dermatodea_contig1078.529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3072bp|location=Sequence derived from alignment at S-dermatodea_contig1078:7513..10893+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGATCGATCCCTCCCCTGAACAGGTCGCCCTGGCCGCCGTTTCGTTCGA
TCCCTCGGCGCCCGAGGGGCTCCGCGAGAAAAATCTGGACCAACTCCAGG
TGGAGCGGAGCCACACCGTGAACGACTCGCGCCTCCCTCCGGCGGTGCCT
GTTCCCTCGCGATCGGCCGGGAAATCCACAGGCGGAGGATGGGGTCGCGG
CAGGACTTCGAGTTCGGCGACTGGCAACGACGGGACCTACGGGAATTGGG
GGTCGCGGCGGCGAGCGATGTCGACCACCGAGGAAGGGGACGCCGGGGTG
GCGGCGTTGATGGTGACGCCCACGGGCATATCGTCGAGGACCTCTTCTCC
TCTGGTCCGTACCCGCTCCGGCTCCGGCGCCGGTAGCAGCGGTAAGGGCG
GGAAGTGGCCGTTTTCGCGGAAGAAGCGGGACGGCATCACTGGGGAGGGG
AAAGCTGGCAAGAAAGGGCTGCTTGGGGCGCTTCAGTCGATCGATCCCTC
CCCTGAACAGGTCGCCCTGGCCGCCGTTTCGTTCGATCCCTCGGCGCCCG
AGGGGCTCCGCGAGAAAAATCTGGACCAACTCCAGGTGGAGCGGAGCCAC
ACCGTGAACGACTCGCGCCTCCCTCCGGCGGTGCCTGTTCCCTCGCGATC
GGCCGGGAAATCCACAGGCGGAGGATGGGGTCGCGGCAGGACTTCGAGTT
CGGCGACTGGCAACGACGGGACCTACGGGAATTGGGGGTCGCGGCGGCGA
GCGATGTCGACCACCGAGGAAGGGGACGCCGGGGTGGCGGCGTTGATGGT
GACGCCCACGGGCATATCGTCGAGGACCTCTTCTCCTCTGGTCCGTACCC
GCTCCGGCTCCGGCGCCGGTAGCAGCGGTAAGGGCGGGAAGTGGCCGTTT
TCGCGGAAGAAGCGGGACGGCATCACTGGGGAGGGGAAAGCTGGCAAGAA
AGGGCTGCTTGGGGCGCTTCAGTGGAACTTGGGAGGGGCGTACAAGAATT
CCACGCCGCCGCCTGTGCCCACCCAAGGTCGACTGCGGCGTTCGGCATTT
GCAGCCCCGGCGTCGGGGGGGTACGTGGATTCTCCGCCCGAGGACGTGAC
AAGCGGCAGGGAAAACTCAGAGAAGGAAGCGAGGATGTCGAGGAAGACCG
CTCGAAAAAATGCCGCTGCTGCCGAGCGGGTGGCGAGACGGCTGCGCGCG
GAGGAAGAAGCGGAGGCGTGGAACTTGGGAGGGGCGTACAAGAATTCCAC
GCCGCCGCCTGTGCCCACCCAAGGTCGACTGCGGCGTTCGGCATTTGCAG
CCCCGGCGTCGGGGGGGTACGTGGATTCTCCGCCCGAGGACGTGACAAGC
GGCAGGGAAAACTCAGAGAAGGAAGCGAGGATGTCGAGGAAGACCGCTCG
AAAAAATGCCGCTGCTGCCGAGCGGGTGGCGAGACGGCTGCGCGCGGAGG
AAGAAGCGGAGGCGGTCCGGAAGATGCAACGCACCATCATCACCCTCGAG
GTACAGCTCTTGGTAAAGGACATCGTCGACGGCGCCTGTGTGCGAGCCGC
GGAGCGGGCCAGCGAGGGGCTAGTCGAGTCGTCGGTCAAGGTCCGGAAGA
TGCAACGCACCATCATCACCCTCGAGGTACAGCTCTTGGTAAAGGACATC
GTCGACGGCGCCTGTGTGCGAGCCGCGGAGCGGGCCAGCGAGGGGCTAGT
CGAGTCGTCGGTCAAGTCGACGCCTCGCTCGGTGTCTGCATCCCTCCCTC
CGGCTCCCCACCCTCGCCTGTCCAGCACGGCGGCGCACTTGGAGCAGCAG
CGCCCTGCGTTCTTCGAGGCCCTGTGGAACGCCAGCGGCGGTGGTGGCGA
GAGAAAGGATCGCCGCCACACAAACGCCGGCACCGGTGATGAGGGTGCCG
CGGGATCGATATGGAGGGCGGGCTCCCGAGACATCGCCTCCGCGCAAGCT
TCCGGACAGAGAACAGGCGCTGGCGCCGGCCTCGGCAAAGAGGGCGACAC
CCAACAGGAGGAAGGGTTCTTCGAGACCCTGCGGCGGAAGCTGTTCGACG
GCGAAAAACTGCGGGTGGAGGAAGAGGCGAGAAAGGCTGCCGCAGCCACA
GCCACCCACGCGGACGTCGCCTCGGCGGCGCCTGAGGAAATGGCCAGGGA
GGAGGCCGGAACGGGGCTCGGGGACGAGGAATCTCCTGATCCGTCCAAGG
CAACGGCGACATCTTCCGCGGTGCAGTCGTCGCTGAAGTTCACGCCCGTG
AGAGCCGCGGAGAGGAGCGGTGGCGATGTCGATGGCGATGGCGACGGCGG
CGGCGGGGGGGCGAGCGGAGGAAGCCGCTTTTTGCGGGGGAAGCCCGCCG
CAGCCGTAGCCTCGGCTTACGGAGCAAGGACTTCACGAGCAACCTCGACG
CCTCGCTCGGTGTCTGCATCCCTCCCTCCGGCTCCCCACCCTCGCCTGTC
CAGCACGGCGGCGCACTTGGAGCAGCAGCGCCCTGCGTTCTTCGAGGCCC
TGTGGAACGCCAGCGGCGGTGGTGGCGAGAGAAAGGATCGCCGCCACACA
AACGCCGGCACCGGTGATGAGGGTGCCGCGGGATCGATATGGAGGGCGGG
CTCCCGAGACATCGCCTCCGCGCAAGCTTCCGGACAGAGAACAGGCGCTG
GCGCCGGCCTCGGCAAAGAGGGCGACACCCAACAGGAGGAAGGGTTCTTC
GAGACCCTGCGGCGGAAGCTGTTCGACGGCGAAAAACTGCGGGTGGAGGA
AGAGGCGAGAAAGGCTGCCGCAGCCACAGCCACCCACGCGGACGTCGCCT
CGGCGGCGCCTGAGGAAATGGCCAGGGAGGAGGCCGGAACGGGGCTCGGG
GACGAGGAATCTCCTGATCCGTCCAAGGCAACGGCGACATCTTCCGCGGT
GCAGTCGTCGCTGAAGTTCACGCCCGTGAGAGCCGCGGAGAGGAGCGGTG
GCGATGTCGATGGCGATGGCGACGGCGGCGGCGGGGGGGCGAGCGGAGGA
AGCCGCTTTTTGCGGGGGAAGCCCGCCGCAGCCGTAGCCTCGGCTTACGG
AGCAAGGACTTCACGAGCAACC back to top
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