mRNA_S-dermatodea_contig1074.504.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1074.504.1 vs. uniprot
Match: D8LT37_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI) HSP 1 Score: 592 bits (1527), Expect = 6.400e-202 Identity = 346/624 (55.45%), Postives = 425/624 (68.11%), Query Frame = 1
Query: 481 MDEEDKKALVLQLADWDPLKKVKVVKAWEATDPRITAEYLLGLIREEQVRSNTCGNLWQCSLCPIKHEVEIEARMRRGEHRRKDRTVDAVGVLYDYHSEGKGA-TDIYRSPHDSLFAFTPPIENVNRRQRSRRRDRGAVSGKGVGQEWQDPQSHNVGCGRTVGGGSIDGRICSKPAEGGGRGALSTNEARQAEETEAEHSPSRAERPLAMIQTPHLILTYAGREFDPRRMCAACTEEL--RGAVISSGHDLEVWHTVDNERRALMERQHQNDLFKAGWAEREREYRQVSELLRLVCEANLEAFSRHSIEERARANRDIQA----SFYHLKLSNLAAVEGGATKDEGLKRSNEKEATSWAATLRLKASLNMDRTYASLEPGGISASLRRRHTTSTKPADFLDDGTPVTPQGATQTFGRAGPPPDDESADIHLWKLQAEDAEDLLDRRQEVRDRHLLCGRQARFSYLCGRWLGAASDIEELQRLKKIMEDIERERRKKEREAAELRRKQQLADLRAAAGCRATGEARRIVEHDKEAEEIKKREEEXXXXXKKQEVAQLADGDRYWGIFREIQRLRALEDMRRIAWEARIRVTREKMVAVRCISELSAFSHATPPKDPELAQKIETL 2331
M ++DKK L+LQLADW+P++KVKV+KAWEATDP +TA +LL LIREEQ R +LWQCSLCP+K VE+EARM+RGEHRRKDRT+DA G LYDY +G G D Y S H+SLF F ++QR + QD G GG GA AE T +PL Q + AG + ++ +E R A+ISSGHDLE+WHTVD+ERRAL+ Q + D+ KA WAERER+ RQVSELLRL+ EANL+AFSRHS+E+RA A +++Q LKLS+ AAV GA KDEGLKR NE+EAT+WAA L+LKA+LNMDR YASLEPGG+ ASLRRR+ TS++P+DFLDDGTP TPQGA QTFGRA PP D+ES I LWK A++ E++LD R++VR+ CGR+ARFS LC RW+G ASDIEE QR K+++E ERE+R +ER+AA+L RK+QLA+LRA AG RATGE RR VE DKEAEE K+ E E ++E AQLA GDRYWG+ RE+QRLR +E+ RR AWE RIR T+EKMVAVRCISELS F+HATPP DPEL Q+I+ L
Sbjct: 1 MSQQDKKILLLQLADWNPVRKVKVMKAWEATDPAMTAGFLLELIREEQARGEGPDSLWQCSLCPVKRNVEVEARMKRGEHRRKDRTIDA-GSLYDYRVKGSGGGPDTYSSAHESLFEF--------KQQRHQHLQ-------------QDESPWETG------------------GTAGGAGA--------AEGT----------KPLGGAQKTRYVEDRAGTASGAGDLASSPAKECLDRSAIISSGHDLELWHTVDHERRALLTGQRRADVLKARWAERERKDRQVSELLRLISEANLDAFSRHSLEDRAMAAQNLQVVDVRRMLDLKLSHSAAVNSGACKDEGLKRLNEREATAWAAKLKLKAALNMDRHYASLEPGGLPASLRRRNPTSSQPSDFLDDGTPATPQGAMQTFGRACPPEDNESGAIRLWKRGAKETEEVLDLRRDVREWQSSCGRRARFSDLCERWVGVASDIEEKQRQKRMIEAAEREKRMRERQAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRL 566 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1074.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1074.504.1 >prot_S-dermatodea_contig1074.504.1 ID=prot_S-dermatodea_contig1074.504.1|Name=mRNA_S-dermatodea_contig1074.504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=781bp MDTKQRSSRRGVGRAPSELKKNDGKAEARAAEKRKVAARRQELLLGLSAEback to top mRNA from alignment at S-dermatodea_contig1074:6999..17089- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1074.504.1 ID=mRNA_S-dermatodea_contig1074.504.1|Name=mRNA_S-dermatodea_contig1074.504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=10091bp|location=Sequence derived from alignment at S-dermatodea_contig1074:6999..17089- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1074:6999..17089- >mRNA_S-dermatodea_contig1074.504.1 ID=mRNA_S-dermatodea_contig1074.504.1|Name=mRNA_S-dermatodea_contig1074.504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4686bp|location=Sequence derived from alignment at S-dermatodea_contig1074:6999..17089- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |