mRNA_S-dermatodea_contig10701.486.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10701.486.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE) HSP 1 Score: 323 bits (827), Expect = 1.100e-98 Identity = 218/537 (40.60%), Postives = 257/537 (47.86%), Query Frame = 1
Query: 181 DAIDILRRHPSFK-TLDSGTISELGKLGVTTFLPFGPSGGFPGLRVEDVADAEGGGGLSEDEDTVRAGGHSSPSATDDPVDNPSVELDSFLQDNESGGHEGSPFCDVDGKQVHKQRVLTEFMGSQFGSASRDRLKRVRGPTVGSSG-VPGLPGVGDGDTQGAGIGNTDARSLSVGDPFAMMVM---MSPGQYALGLLSCTAAPSEGTRAGSGEVVKGRLMKLKQTRRALEVDERAIIPATNS---------APLADSWDHWGELGMHKWELQCKCRLVFPLYPDLVQEPIVVKETVTRTLMGVEPPMQETVEIENVVDRTSFWFSLPDLVAVKGLLVDEVGAFKAWRHLPHQNIARAEANPLPIHEDLFHVEADTVGAAPAGGTGAEKIWCKLCLSQLPRLKMRMNVGGHILKDETLQVSTVCGFCGGSGCRTTIKDLTGKAAPLMHSNCVSAPRKDARHEVVAVNLKSARAGSDTSPCTNLVVKCIFCSLETYVWKYGMADHVARCHKEDTGVEDGTESGQNFKKEYTASESEKTK 1749
DA+DILR HPS++ +++ TISEL K+GVTTFLPFG + G AGG ELD+FL ESG E + C+VDGKQ+HKQR LTEFMG F +ASRDRLKR+RG T G SG G GVG + AGIGNTD+R + VGDPFAM+V M P QYALGL SCT AP + V KGRLMKL++++ A V + + AP DSW HWG+LG+HK EL CKCRLV L PD +D + GGHILKD+ VST CGFCGG G TTI D GKA PL+HS C SAPR DAR E VA+NL SARAGSDTS CTN+V KC FCS Y+WKY M+DH+ RCH+ D V +GT NFK+ T SESEK K
Sbjct: 155 DAVDILRGHPSYEASVNRETISELQKVGVTTFLPFGATEGL-------------------------AGG----------------ELDAFLHATESGPGEITSSCEVDGKQIHKQRALTEFMGPAFQNASRDRLKRLRGYTAGQSGSATGSRGVGGRGEEAAGIGNTDSRGIVVGDPFAMLVATPGMRPAQYALGLFSCTKAPMDEQAQDGSPVFKGRLMKLQRSKVAPAVGAVRLGEGDGTSSSDFGEDGAPAKDSWQHWGDLGLHKGELSCKCRLVLALDPD---------------------------------------------------------------------------------DDAYR-------------------------------------GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKAK 528
BLAST of mRNA_S-dermatodea_contig10701.486.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE) HSP 1 Score: 215 bits (547), Expect = 3.140e-55 Identity = 180/545 (33.03%), Postives = 213/545 (39.08%), Query Frame = 1
Query: 181 DAIDILRRHPSFK-TLDSGTISELGKLGVTTFLPFGPSGGFPGLRVEDVADAEGGGGLSEDEDTVRAGGHSSPSATDDPVDNPSVELDSFLQDNESGGHEGSPFCDVDGKQVHKQRVLTEFMGSQFGSASRDRLKRVRGPTVGSSG-VPGLPGVGDGDTQGAGIGNTDARSLSVGDPFAMMVMMSPGQYALGLLSCTAAPSEGTRAGSGEVVKGRLMKLKQTRRALEVDERAIIPATNSAPLADSWDHWGELGMHKWELQCKCRLVFPLYPDLVQEPIVVKETVTRTLMGVEPPMQETVEIENVVDRTSFWFSLPDLVAVKGLLVDEVGAFKAWRHLPHQNIARAEANPLPIHEDLFHVEADTVGAAPAGGTGAEKIWCKLCLSQLPRLKMRMNVGGHILKDETLQVSTVCGFCGGSGCRTTIKDLTGKAAPLMHSNCVSAPRKDARHEVVAVNLKSARAGSDTSPCTNLVVKCIFCSLETYVWKYGMADHVARCHKEDTGVEDGTESGQNFKKEYTASESEKTKVLKKFKGG-DKRRDNG-TLP 1803
DA+DILR H S K ++D TISEL K+GVTTF+ FG G SEDED G S+P+ T+D V+LD+FL E+G E S F +VDGKQ+HKQR LTEF+G F +ASRDRLKRVRG T G SG G GVG + AG+GNTD+R + VGD C VG P ++T VSTVCGFCGG GCR+TI D G+A PL+HS C SAPR DAR E VA+NL SARA SDTSPCTN+V+KC CS + Y+W YGM DHV RCH+ + V GT FK+ T SESEK KVL K K G +RRD G TLP
Sbjct: 918 DAVDILRGHSSCKASVDRETISELQKVGVTTFVSFGGEG-------------------SEDEDDAGEGEQSAPATTEDAEGLAGVDLDAFLHATENGPGEISSFYEVDGKQIHKQRALTEFLGPAFQNASRDRLKRVRGYTAGPSGSATGSRGVGRKGVEAAGVGNTDSRGIVVGD--------------------------------------------------------------------------------------CH---------------------------------------------------------------------------------------------------VGGDPG--------------------------------NKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLP 1225
BLAST of mRNA_S-dermatodea_contig10701.486.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 3.870e-19 Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 1582 LVVKCIFCSLETYVWKYGMADHVARCHKEDTGVEDGTESGQNFKKEYTASESEKTKVLKKFKGGDKRR---DNGTLPTGARRGVSGNVAPGRGVPGARPSQEEEEE 1890
+V+KC+FCS +TY+WKYGM++HV RCH+ED V GT + FK+ YT SESEK KVL+KFK G RR N LPTGA GN GR + G R ++ EE
Sbjct: 1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLEDMGEE 105
BLAST of mRNA_S-dermatodea_contig10701.486.1 vs. uniprot
Match: A0A814RY66_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814RY66_9BILA) HSP 1 Score: 70.5 bits (171), Expect = 4.350e-9 Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 1300 KIWCKLCLSQLPRLKMRMNVGGHILKDETLQVSTVCGFCGGSGCRTTIKDLTGKAAPLMHSNCVSAPRKDARHEVVAVNLKSARAGSDTSPCTNLVVKCIFCSLETYVWKYGMADHVARCH 1662
K+ CK+C S + KMR++VG HILK++++ +CG+CG GC +K +G+ + V P D + V +LK+A S PCTN ++CI C + W Y +A H H
Sbjct: 308 KLNCKICDSLVLLEKMRIHVGQHILKNDSVG-EHICGYCGKLGCIIRLKKSSGRG-----KSTVFGPDSDCKF-FVKFSLKAASKVSKNYPCTNRPIECIIC--KAVYWSYNIAIHYKEKH 419 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10701.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10701.486.1 >prot_S-dermatodea_contig10701.486.1 ID=prot_S-dermatodea_contig10701.486.1|Name=mRNA_S-dermatodea_contig10701.486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=682bp LSAAIGVEQVYEKNPGLRRTSTRLNGLDHTSPRQWDDNGPANNTDVRDVDback to top mRNA from alignment at S-dermatodea_contig10701:5094..7678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10701.486.1 ID=mRNA_S-dermatodea_contig10701.486.1|Name=mRNA_S-dermatodea_contig10701.486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2585bp|location=Sequence derived from alignment at S-dermatodea_contig10701:5094..7678+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10701:5094..7678+ >mRNA_S-dermatodea_contig10701.486.1 ID=mRNA_S-dermatodea_contig10701.486.1|Name=mRNA_S-dermatodea_contig10701.486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4092bp|location=Sequence derived from alignment at S-dermatodea_contig10701:5094..7678+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |