mRNA_S-dermatodea_contig1066.464.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1066.464.1
Unique NamemRNA_S-dermatodea_contig1066.464.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1066.464.1 vs. uniprot
Match: D7FYP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 9.320e-17
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:   28 IMPTAHRRRRSRLDEGPGAYDDVSLSTLFAHLMKLADDEAEATCPGSASGTTDPXXXXXXXXYFSSSALADNDTLFKRHSATVRRWMKHAVEDLHVDALIVVSATTLALQYLRHRHRFPS 387
            ++    RR    +D+G      + L TLF+HLMKL  DEA A    +A   T             + A  +   LF R S  VR WMK A+ED H+DA +V SATTLAL++L+ RH +PS
Sbjct:   27 LLSPVLRRSNGDMDDG----GVIQLPTLFSHLMKLGKDEAGAVAEAAALAATAGGKSNVSLPLLLTPAPTEKAVLFARDSGRVRGWMKSALEDRHIDAQVVASATTLALRWLQRRHMYPS 142
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BLAST of mRNA_S-dermatodea_contig1066.464.1 vs. uniprot
Match: A0A6H5K008_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K008_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.900e-13
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:   28 IMPTAHRRRRSRLDEGPGAYDDVSLSTLFAHLMKLADDEAEATCPGSASGTTDPXXXXXXXXYFSSSALADNDTLFKRHSATVRRWMKHAVEDLHVDALIVVSATTLALQYLRHRHRFPS 387
            ++    RR    +D+G      + L+TLF+HLMKL  DEA A    +                  +    +   LF   S  VR WMK A+E+ H+DA +V SATTLAL++L+ RH +PS
Sbjct:   15 LLSPVLRRPNGNMDDG----GVIQLTTLFSHLMKLGRDEAGAVAEAATFAAKAGGKSNISLPLLLTPPPTEKAVLFALDSGRVRGWMKSALENRHIDAQVVTSATTLALRWLQRRHLYPS 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1066.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYP4_ECTSI9.320e-1740.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K008_9PHAE2.900e-1335.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1066contigS-dermatodea_contig1066:10514..11560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004220.1
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1066.464.1prot_S-dermatodea_contig1066.464.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1066 10544..11560 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.3257475-UTR-S-dermatodea_contig1066:10513..105431622924168.3257475-UTR-S-dermatodea_contig1066:10513..10543Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1066 10514..10543 +
1694079064.4539182-UTR-S-dermatodea_contig1066:10513..105431694079064.4539182-UTR-S-dermatodea_contig1066:10513..10543Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1066 10514..10543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.3345962-CDS-S-dermatodea_contig1066:10543..106571622924168.3345962-CDS-S-dermatodea_contig1066:10543..10657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1066 10544..10657 +
1694079064.464954-CDS-S-dermatodea_contig1066:10543..106571694079064.464954-CDS-S-dermatodea_contig1066:10543..10657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1066 10544..10657 +
1622924168.345056-CDS-S-dermatodea_contig1066:11248..115601622924168.345056-CDS-S-dermatodea_contig1066:11248..11560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1066 11249..11560 +
1694079064.4741817-CDS-S-dermatodea_contig1066:11248..115601694079064.4741817-CDS-S-dermatodea_contig1066:11248..11560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1066 11249..11560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1066.464.1

>prot_S-dermatodea_contig1066.464.1 ID=prot_S-dermatodea_contig1066.464.1|Name=mRNA_S-dermatodea_contig1066.464.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
MPTAHRRRRSRLDEGPGAYDDVSLSTLFAHLMKLADDEAEATCPGSASGT
TDPPTTPPSPPYFSSSALADNDTLFKRHSATVRRWMKHAVEDLHVDALIV
VSATTLALQYLRHRHRFPSSRGTSIHHRRLADAWAHARSYLP
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mRNA from alignment at S-dermatodea_contig1066:10514..11560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1066.464.1 ID=mRNA_S-dermatodea_contig1066.464.1|Name=mRNA_S-dermatodea_contig1066.464.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1047bp|location=Sequence derived from alignment at S-dermatodea_contig1066:10514..11560+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAATTTGGACACCACTAACACATTCCATCATGCCAACAGCGCATCGACG
GCGACGATCGAGGCTCGATGAAGGGCCTGGCGCGTACGATGATGTCAGCC
TTTCCACCCTTTTCGCCCATCTCATGAAGCTCGCCGATGATGAGGTAAAG
CTTTTTCATTAATAGTATAATTTCGCACTGAGATTACCATTTATTAATAT
TAATACTGTAGTATCAAAGGGTTCATTGAGACTTCCATTTTGTTTGATAC
CTGGTATGAAATAAACAAATTTATCATGACGATTCCGCAGCTTTTTTTAC
GTGACAATGCACTTACTTGTGTTCTCGTGGCCGAAACCTTCCCGCGCTTG
CGCCCGAGCATCGTTGTTTGGATTGGGTAATCACGTTTTGATGGGTTCTC
ATGTTTCGATGATGGATATGGTTAATGAATCCAATCCATCCATGCTCATA
CACCGACGACATCGTCTTCATACAACTATTTGTAGAGCGAAATACTTGGT
CCTGCAAAATGAGCAAGTTAGTTGTATGTGTACCCGTGACAGAGTATTAA
TAGTGTTATTCATCTTGTTTGCAAAATAATACGCACATTGAAGTTGGCCA
CCCGCCCCCACCCCTTCAAATCACAACTAACTGTGTGTGTGTGATTGTTT
CGTGGTGCGCCATCCAAGCCTGAGCAAGTCATTGCCTTGCGCAACGAATG
CGCTCTGCACGTCTCGCTCGTGTGCCGACAACCAGGCAGAAGCTACTTGT
CCAGGATCGGCATCGGGCACGACAGATCCACCCACCACACCGCCGTCACC
CCCGTACTTCTCCTCCTCTGCGCTCGCTGACAACGACACGCTTTTCAAAC
GACACTCGGCCACAGTTCGGCGATGGATGAAGCACGCCGTCGAGGACCTC
CACGTAGACGCGCTGATCGTGGTCTCGGCCACTACGTTAGCACTACAATA
CTTGCGCCATAGACACCGATTCCCTTCGTCTCGTGGTACTAGTATCCACC
ACCGACGGCTCGCGGATGCTTGGGCCCATGCGCGAAGCTACCTCCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1066:10514..11560+

>mRNA_S-dermatodea_contig1066.464.1 ID=mRNA_S-dermatodea_contig1066.464.1|Name=mRNA_S-dermatodea_contig1066.464.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig1066:10514..11560+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCAACAGCGCATCGACGGCGACGATCGAGGCTCGATGAAGGGCCTGG
CGCGTACGATGATGTCAGCCTTTCCACCCTTTTCGCCCATCTCATGAAGC
TCGCCGATGATGAGATGCCAACAGCGCATCGACGGCGACGATCGAGGCTC
GATGAAGGGCCTGGCGCGTACGATGATGTCAGCCTTTCCACCCTTTTCGC
CCATCTCATGAAGCTCGCCGATGATGAGGCAGAAGCTACTTGTCCAGGAT
CGGCATCGGGCACGACAGATCCACCCACCACACCGCCGTCACCCCCGTAC
TTCTCCTCCTCTGCGCTCGCTGACAACGACACGCTTTTCAAACGACACTC
GGCCACAGTTCGGCGATGGATGAAGCACGCCGTCGAGGACCTCCACGTAG
ACGCGCTGATCGTGGTCTCGGCCACTACGTTAGCACTACAATACTTGCGC
CATAGACACCGATTCCCTTCGTCTCGTGGTACTAGTATCCACCACCGACG
GCTCGCGGATGCTTGGGCCCATGCGCGAAGCTACCTCCCTGCAGAAGCTA
CTTGTCCAGGATCGGCATCGGGCACGACAGATCCACCCACCACACCGCCG
TCACCCCCGTACTTCTCCTCCTCTGCGCTCGCTGACAACGACACGCTTTT
CAAACGACACTCGGCCACAGTTCGGCGATGGATGAAGCACGCCGTCGAGG
ACCTCCACGTAGACGCGCTGATCGTGGTCTCGGCCACTACGTTAGCACTA
CAATACTTGCGCCATAGACACCGATTCCCTTCGTCTCGTGGTACTAGTAT
CCACCACCGACGGCTCGCGGATGCTTGGGCCCATGCGCGAAGCTACCTCC
CT
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