mRNA_S-dermatodea_contig10659.461.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10659.461.1
Unique NamemRNA_S-dermatodea_contig10659.461.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10659.461.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.350e-88
Identity = 144/199 (72.36%), Postives = 163/199 (81.91%), Query Frame = 1 
Query:  253 EWEPPWSGVPRPSELVPPSVFQACWLENRLFLMDKNVFSAEYLDWVCDLTALVPPPKIPYLSRPHVHDTGAKGDVDDVDEVESSAAKVALFLALDTIARAKDKGRLSQLMLYVRSWFRASPSVCRWALVQMTTNNYWQHTMLLQCNLHGVRHEFLQLCVELVRCYAPVERHLYYIEHPAIGEHEYLAAVRQREERERQR 849
            EWEPPW GVPRPSELVPPS+FQACW+ENRLFLMDKNVFS+EYLDWVCDLTALVPPP++P                DDVDEVE S AKVALFLALDT+ARAKDK RLSQLM Y + WFR+SP+VCRWAL QMT NNYWQHTMLL+C+L GVR EFL LCV+LVR YAP ERH YY E P+IG + YLAAVRQ+++R+ +R
Sbjct: 1970 EWEPPWMGVPRPSELVPPSIFQACWMENRLFLMDKNVFSSEYLDWVCDLTALVPPPRVPPSGSGSTEGARIAAGGDDVDEVELSTAKVALFLALDTVARAKDKERLSQLMGYAKRWFRSSPTVCRWALEQMTANNYWQHTMLLRCSLQGVRFEFLHLCVDLVRSYAPYERHKYYEEDPSIGANLYLAAVRQQQQRKGER 2168
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BLAST of mRNA_S-dermatodea_contig10659.461.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 7.790e-81
Identity = 142/204 (69.61%), Postives = 155/204 (75.98%), Query Frame = 1 
Query:  220 GREAAVSP--REKEWEPPWSGVPRPSELVPPSVFQACWLENRLFLMDKNVFSAEYLDWVCDLTALVPPPKIPYLSRPHVHDTGAKGDVDDVDEVESSAAKVALFLALDTIARAKDKGRLSQLMLYVRSWFRASPSVCRWALVQMTTNNYWQHTMLLQCNLHGVRHEFLQLCVELVRCYAPVERHLYYIEHPAIGEHEYLAAVRQ 825
            GR  AVSP     EWEPPW GVPRPSELVPPS+FQACW+ENRLFLMDKNVFS+EYLDWVCDLTALVPPP++P                DDVDEVE S AKVALFLALDT+ARAKDK RLSQLM Y + WFRASP+        MT NNYWQHTMLL+C+L GVR EFL LCV+LVR YAP ERH YY E P+IG + YLAAVRQ
Sbjct:  278 GRGEAVSPGGAGDEWEPPWMGVPRPSELVPPSIFQACWMENRLFLMDKNVFSSEYLDWVCDLTALVPPPRVPPSGSGSAEGARIATGGDDVDEVELSTAKVALFLALDTVARAKDKERLSQLMGYAKRWFRASPT--------MTANNYWQHTMLLRCSLQGVRFEFLHLCVDLVRSYAPYERHKYYEEDPSIGANLYLAAVRQ 473
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10659.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI1.350e-8872.36Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KF55_9PHAE7.790e-8169.61USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10659contigS-dermatodea_contig10659:5743..7572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.3
Seed ortholog evalue6.2e-80
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size883
Cds size879
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10659.461.1prot_S-dermatodea_contig10659.461.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10659 5745..7572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.1489105-CDS-S-dermatodea_contig10659:5744..59811622924168.1489105-CDS-S-dermatodea_contig10659:5744..5981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 5745..5981 -
1694079064.3282347-CDS-S-dermatodea_contig10659:5744..59811694079064.3282347-CDS-S-dermatodea_contig10659:5744..5981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 5745..5981 -
1622924168.1646495-CDS-S-dermatodea_contig10659:6417..67411622924168.1646495-CDS-S-dermatodea_contig10659:6417..6741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 6418..6741 -
1694079064.343954-CDS-S-dermatodea_contig10659:6417..67411694079064.343954-CDS-S-dermatodea_contig10659:6417..6741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 6418..6741 -
1622924168.1784728-CDS-S-dermatodea_contig10659:7254..75721622924168.1784728-CDS-S-dermatodea_contig10659:7254..7572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 7255..7572 -
1694079064.3526504-CDS-S-dermatodea_contig10659:7254..75721694079064.3526504-CDS-S-dermatodea_contig10659:7254..7572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 7255..7572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10659.461.1

>prot_S-dermatodea_contig10659.461.1 ID=prot_S-dermatodea_contig10659.461.1|Name=mRNA_S-dermatodea_contig10659.461.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=293bp
NPAPFPRTSHKPPPPPPPCDNGASADTVALPAGKSSAASVAGMESTETVA
AAEGARNSAEAQGKQDGSRGLVEGREAAVSPREKEWEPPWSGVPRPSELV
PPSVFQACWLENRLFLMDKNVFSAEYLDWVCDLTALVPPPKIPYLSRPHV
HDTGAKGDVDDVDEVESSAAKVALFLALDTIARAKDKGRLSQLMLYVRSW
FRASPSVCRWALVQMTTNNYWQHTMLLQCNLHGVRHEFLQLCVELVRCYA
PVERHLYYIEHPAIGEHEYLAAVRQREERERQRQGLRPEAGAA
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mRNA from alignment at S-dermatodea_contig10659:5743..7572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10659.461.1 ID=mRNA_S-dermatodea_contig10659.461.1|Name=mRNA_S-dermatodea_contig10659.461.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1830bp|location=Sequence derived from alignment at S-dermatodea_contig10659:5743..7572- (Saccorhiza dermatodea SderLu1190fm monoicous)
AACCCCGCCCCCTTCCCGAGAACCTCCCACAAGCCGCCGCCGCCGCCGCC
GCCATGCGATAACGGTGCTTCAGCGGATACAGTCGCGCTCCCCGCGGGAA
AATCTTCTGCTGCGTCGGTGGCCGGGATGGAATCAACGGAGACGGTAGCC
GCTGCCGAGGGTGCGAGGAATTCGGCGGAGGCGCAGGGAAAGCAAGATGG
GAGCCGGGGTTTGGTGGAGGGTCGGGAGGCGGCAGTGTCACCGCGGGAGA
AAGAGTGGGAGCCGCCATGGTCGGGAGTGCCTCGGCCGTCAGAGCTAGTG
CCTCCTTCTGTATTTCAGGTGCTCCTTTGGCTGCTGATATGGAAGTGTTT
GAAGCGTGTGCTGGTCGGGGTCAGGAGATCGTGCAGTGGGCTGTGCCGCT
GAGTGCGCCGTAAACCGCCGGAATGTCATGCGGTTGTGGGAGAGCGTCGG
TAGATGTTTCTGAGATGGCGAGGCCAGGTTGCGTGCTTTTGTTTGGTTGG
TTGTGAGTGGGCTTTAAAGTGGGTTTTTATACGCTTTTCATTTTTCAACC
ATTTTCGGAGAAAATGCTCCGTACCGCAAAAGGGGCGAAAACAGCGTGGA
CAAATTGCCCGTCTTGAGAGCGTACTGAGAGCGTATGCAGAACAAAATTT
CATCCTCACGCTGTGCGATGTGCTGCGTAGTACGCTCGGCATGTGTTTCC
AGGCGGTACAATGTGGTGGCCTGTATGCACCTTTTGCACTCATTTTACTC
TTCCGGGCGTACCGGCGTTGTCGCTGCCTCCCCCCCCCCCACGCCACGCC
ACCTCCCGCCGTTCCCTAACCATTACGGCAGGCGTGTTGGTTGGAGAACC
GGCTCTTCTTAATGGACAAGAACGTCTTCAGCGCCGAGTATCTCGACTGG
GTGTGCGACCTCACAGCGCTGGTGCCGCCACCAAAAATACCATACCTCTC
GCGGCCACACGTGCACGATACCGGCGCCAAAGGCGATGTCGACGATGTCG
ACGAGGTGGAGAGCTCGGCCGCAAAGGTGGCGCTATTCCTGGCGTTAGAT
ACGATTGCGAGAGCGAAGGATAAAGGCAGGCTGTCGCAACTGATGCTGTA
CGTGAGGAGCTGGTTCCGGGCTAGCCCGTCGGTGTGCCGATGGGCGCTTG
TGCAGGTACGTAAGGCATACGTGGGGACGAGCTTTCGATGCACGGTGGTT
TCCTGCCCACTTGCTCGTTGGCTCAAATGTGTTGTTCCCGGTCAGTAGTG
CACGCGGCGTTGAGTCACGTCGACGCTTGCAACAAAAGGCCGACAAACAA
GGTGTGGAAACCCCTATCTAGCCTTTGCAGAATTCAAGGTGGTTTCAATG
TCTTACCGTGCGGGATCCACTAAAGTTTGAATCGACCTGACGTCATAGCG
AATAGCGAGCGCAGCTTTTTCGCAAATGACTTGGTTTCTCGGGAAATGTG
CCGTAAAACCCGCTGTCAGTAGGGCCGCTCGCGCCTACCCGTGGCACGTG
ATTGAAGGTGCCGATAATGGGAAATCGCGTCTTAGCTGCCGCCCTCCCCG
AACCGCACGAAAAACGCTCCCGCCTGTGGCTCCCCCCAAAGATGACCACG
AACAACTACTGGCAGCACACGATGCTGCTGCAGTGCAACCTTCACGGGGT
GCGGCACGAGTTCTTGCAGTTGTGTGTTGAGCTGGTCCGATGCTACGCTC
CCGTCGAGCGCCACTTGTACTACATAGAGCACCCGGCTATCGGTGAGCAC
GAGTACCTGGCTGCCGTACGCCAGCGAGAGGAACGCGAGAGACAGCGGCA
GGGGCTGCGACCGGAGGCGGGAGCGGCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10659:5743..7572-

>mRNA_S-dermatodea_contig10659.461.1 ID=mRNA_S-dermatodea_contig10659.461.1|Name=mRNA_S-dermatodea_contig10659.461.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at S-dermatodea_contig10659:5743..7572- (Saccorhiza dermatodea SderLu1190fm monoicous)
AACCCCGCCCCCTTCCCGAGAACCTCCCACAAGCCGCCGCCGCCGCCGCC
GCCATGCGATAACGGTGCTTCAGCGGATACAGTCGCGCTCCCCGCGGGAA
AATCTTCTGCTGCGTCGGTGGCCGGGATGGAATCAACGGAGACGGTAGCC
GCTGCCGAGGGTGCGAGGAATTCGGCGGAGGCGCAGGGAAAGCAAGATGG
GAGCCGGGGTTTGGTGGAGGGTCGGGAGGCGGCAGTGTCACCGCGGGAGA
AAGAGTGGGAGCCGCCATGGTCGGGAGTGCCTCGGCCGTCAGAGCTAGTG
CCTCCTTCTGTATTTCAGAACCCCGCCCCCTTCCCGAGAACCTCCCACAA
GCCGCCGCCGCCGCCGCCGCCATGCGATAACGGTGCTTCAGCGGATACAG
TCGCGCTCCCCGCGGGAAAATCTTCTGCTGCGTCGGTGGCCGGGATGGAA
TCAACGGAGACGGTAGCCGCTGCCGAGGGTGCGAGGAATTCGGCGGAGGC
GCAGGGAAAGCAAGATGGGAGCCGGGGTTTGGTGGAGGGTCGGGAGGCGG
CAGTGTCACCGCGGGAGAAAGAGTGGGAGCCGCCATGGTCGGGAGTGCCT
CGGCCGTCAGAGCTAGTGCCTCCTTCTGTATTTCAGGCGTGTTGGTTGGA
GAACCGGCTCTTCTTAATGGACAAGAACGTCTTCAGCGCCGAGTATCTCG
ACTGGGTGTGCGACCTCACAGCGCTGGTGCCGCCACCAAAAATACCATAC
CTCTCGCGGCCACACGTGCACGATACCGGCGCCAAAGGCGATGTCGACGA
TGTCGACGAGGTGGAGAGCTCGGCCGCAAAGGTGGCGCTATTCCTGGCGT
TAGATACGATTGCGAGAGCGAAGGATAAAGGCAGGCTGTCGCAACTGATG
CTGTACGTGAGGAGCTGGTTCCGGGCTAGCCCGTCGGTGTGCCGATGGGC
GCTTGTGCAGGCGTGTTGGTTGGAGAACCGGCTCTTCTTAATGGACAAGA
ACGTCTTCAGCGCCGAGTATCTCGACTGGGTGTGCGACCTCACAGCGCTG
GTGCCGCCACCAAAAATACCATACCTCTCGCGGCCACACGTGCACGATAC
CGGCGCCAAAGGCGATGTCGACGATGTCGACGAGGTGGAGAGCTCGGCCG
CAAAGGTGGCGCTATTCCTGGCGTTAGATACGATTGCGAGAGCGAAGGAT
AAAGGCAGGCTGTCGCAACTGATGCTGTACGTGAGGAGCTGGTTCCGGGC
TAGCCCGTCGGTGTGCCGATGGGCGCTTGTGCAGATGACCACGAACAACT
ACTGGCAGCACACGATGCTGCTGCAGTGCAACCTTCACGGGGTGCGGCAC
GAGTTCTTGCAGTTGTGTGTTGAGCTGGTCCGATGCTACGCTCCCGTCGA
GCGCCACTTGTACTACATAGAGCACCCGGCTATCGGTGAGCACGAGTACC
TGGCTGCCGTACGCCAGCGAGAGGAACGCGAGAGACAGCGGCAGGGGCTG
CGACCGGAGGCGGGAGCGGCGATGACCACGAACAACTACTGGCAGCACAC
GATGCTGCTGCAGTGCAACCTTCACGGGGTGCGGCACGAGTTCTTGCAGT
TGTGTGTTGAGCTGGTCCGATGCTACGCTCCCGTCGAGCGCCACTTGTAC
TACATAGAGCACCCGGCTATCGGTGAGCACGAGTACCTGGCTGCCGTACG
CCAGCGAGAGGAACGCGAGAGACAGCGGCAGGGGCTGCGACCGGAGGCGG
GAGCGGCG
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