mRNA_S-dermatodea_contig1062.433.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1062.433.1
Unique NamemRNA_S-dermatodea_contig1062.433.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1062.433.1 vs. uniprot
Match: D8LK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK29_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.590e-15
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   97 SANRPGFSSYDETHQIFTHVLRDWTSEGRSVRAAVYDPLIQALDAYVGWQEVEATGAAATAPSGTGGYGDGNSMA 321
            S  R GF SYDETHQIFTH+LRDWTSEG SVRAAVY PL++ALD   G QE         A S T G G+ + ++
Sbjct:  242 SKTRTGFHSYDETHQIFTHILRDWTSEGDSVRAAVYSPLLKALDDRFGRQE---------AASSTSGRGNSDGLS 307
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BLAST of mRNA_S-dermatodea_contig1062.433.1 vs. uniprot
Match: A0A6H5JII3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.640e-6
Identity = 31/58 (53.45%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:  142 IFTHVLRDWTSEGRSVRAAVYDPLIQALDAYVGWQEVEATGAAATAPSGTGGYGDGNS 315
            IFTH+LRDWTSEG +VRAAVY PL++ALD     QE           S  GG GD  S
Sbjct:    2 IFTHILRDWTSEGAAVRAAVYSPLLKALDDRFSRQE---------GASSAGGRGDSYS 50
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1062.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK29_ECTSI1.590e-1557.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JII3_9PHAE1.640e-653.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1062contigS-dermatodea_contig1062:9756..10727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.367139-CDS-S-dermatodea_contig1062:9755..98961622924166.367139-CDS-S-dermatodea_contig1062:9755..9896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 9756..9896 +
1694079063.135973-CDS-S-dermatodea_contig1062:9755..98961694079063.135973-CDS-S-dermatodea_contig1062:9755..9896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 9756..9896 +
1622924166.379935-CDS-S-dermatodea_contig1062:10500..107251622924166.379935-CDS-S-dermatodea_contig1062:10500..10725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 10501..10725 +
1694079063.1456795-CDS-S-dermatodea_contig1062:10500..107251694079063.1456795-CDS-S-dermatodea_contig1062:10500..10725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 10501..10725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1062.433.1prot_S-dermatodea_contig1062.433.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1062 9756..10725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1062.433.1

>prot_S-dermatodea_contig1062.433.1 ID=prot_S-dermatodea_contig1062.433.1|Name=mRNA_S-dermatodea_contig1062.433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
IVQGPAATVADALEELSKGKSREWGGGEQQNSSANRPGFSSYDETHQIFT
HVLRDWTSEGRSVRAAVYDPLIQALDAYVGWQEVEATGAAATAPSGTGGY
GDGNSMAGEWKRAERDQPRRKR
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mRNA from alignment at S-dermatodea_contig1062:9756..10727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1062.433.1 ID=mRNA_S-dermatodea_contig1062.433.1|Name=mRNA_S-dermatodea_contig1062.433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig1062:9756..10727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGTGCAGGGCCCGGCCGCTACGGTCGCCGATGCTCTGGAAGAATTGTC
GAAAGGAAAGAGCAGGGAATGGGGCGGTGGCGAACAGCAAAATTCTTCTG
CGAACCGACCGGGATTTTCCTCTTACGACGAGACGCACCAGGTGACTTCA
ACGCTTTCGTCGAGGCGTGCACACGAGGACATTTCAAACAGGCCTTAGCA
ATTCCAATTCGGTTCATTCAACACGTGTGCCATTTTTGCGCGCGACAAGA
TGATCGGAGGGCGTCAAGCAAACCTCTAAATCCCACCAGCGACTTTCTCG
CCCACAAGAAAAGAGTCGGGGTGGTCTTGGTTTCATCGTATCGCGGTACT
TTTACTTTCCTGGCGTGTGGATTCCCCCCTATTAACAGTGTGTTGTAGCA
TCGCCGAGAAGAACTCTTCGGGATTTTCTTCTTTCCCCACACATTTATCG
CGAATCGATAATCGTAACATGCTCCCATTCTCGCCTGGCAAAGACTGCTA
TTGCCCGGCGACAGATGTACGCACGCGGGGCCGCTGTAGGCAACTACGAC
TAGGCCAGAATAGAACCCGCACGGGTAGGCTAGGCCTTCGATTCCACGAG
TGTGGCCTTCCCGAAGTATATACTTCGTATGTACTATAGTAAATGCGCAT
ACTGTATACAACGGCGTGTGTGGCTGAAGTGTCCAAAACGTCGCCGAAAC
GCTTAACCCCGTCCCACGCCTCCCCATCCAACCCCCCCACATCAGATTTT
CACTCACGTTTTGAGGGATTGGACCTCGGAGGGACGCTCCGTCAGAGCCG
CAGTCTACGATCCACTCATACAAGCCTTAGATGCCTACGTTGGCTGGCAG
GAAGTCGAGGCAACTGGTGCAGCTGCCACAGCTCCCTCAGGCACCGGCGG
TTATGGTGACGGTAATAGCATGGCCGGGGAGTGGAAACGGGCGGAGCGCG
ACCAGCCCAGGCGGAAGAGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1062:9756..10727+

>mRNA_S-dermatodea_contig1062.433.1 ID=mRNA_S-dermatodea_contig1062.433.1|Name=mRNA_S-dermatodea_contig1062.433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig1062:9756..10727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGTGCAGGGCCCGGCCGCTACGGTCGCCGATGCTCTGGAAGAATTGTC
GAAAGGAAAGAGCAGGGAATGGGGCGGTGGCGAACAGCAAAATTCTTCTG
CGAACCGACCGGGATTTTCCTCTTACGACGAGACGCACCAGATTGTGCAG
GGCCCGGCCGCTACGGTCGCCGATGCTCTGGAAGAATTGTCGAAAGGAAA
GAGCAGGGAATGGGGCGGTGGCGAACAGCAAAATTCTTCTGCGAACCGAC
CGGGATTTTCCTCTTACGACGAGACGCACCAGATTTTCACTCACGTTTTG
AGGGATTGGACCTCGGAGGGACGCTCCGTCAGAGCCGCAGTCTACGATCC
ACTCATACAAGCCTTAGATGCCTACGTTGGCTGGCAGGAAGTCGAGGCAA
CTGGTGCAGCTGCCACAGCTCCCTCAGGCACCGGCGGTTATGGTGACGGT
AATAGCATGGCCGGGGAGTGGAAACGGGCGGAGCGCGACCAGCCCAGGCG
GAAGAGGATTTTCACTCACGTTTTGAGGGATTGGACCTCGGAGGGACGCT
CCGTCAGAGCCGCAGTCTACGATCCACTCATACAAGCCTTAGATGCCTAC
GTTGGCTGGCAGGAAGTCGAGGCAACTGGTGCAGCTGCCACAGCTCCCTC
AGGCACCGGCGGTTATGGTGACGGTAATAGCATGGCCGGGGAGTGGAAAC
GGGCGGAGCGCGACCAGCCCAGGCGGAAGAGG
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