mRNA_S-dermatodea_contig10614.427.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10614.427.1
Unique NamemRNA_S-dermatodea_contig10614.427.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10614.427.1 vs. uniprot
Match: A0A6H5L0M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.090e-14
Identity = 69/201 (34.33%), Postives = 100/201 (49.75%), Query Frame = 3 
Query:    6 EEVAALTGCMSGRERDILSLIRSGAVEGAFLLSKRGAPSDAVKGRNSMPENPRSSSS---RAQVPAPGTCHISIS-SASIGGTANRSMSAPARQRRVRNQVGGNQDRPLYAIVSGNFIDKLGSIVLDLTTP-----LIVTPQMHLESLGILGRVPNERVTP------------RYPDRFALLELSVEPPVDIVVGSRYLVL 545
            EE AA+ GC S R+R+IL+LIR+G+V   FLLS+R   +    G+     +  + +    R   P+ G    S S S S GG + RS ++ A        VG   DRPLYA+VS +F+   GS+V  L+ P      I T ++  E +    + P    T             R   RF LLEL VE PV++V+G+R  ++
Sbjct:  620 EEDAAMAGCESTRQREILALIRAGSVGETFLLSRRRHSTSGAAGKKRQLASTATGTMTPRRHSEPSGGGAINSFSASTSRGGVSLRSTTSSA--------VGKQFDRPLYAVVSEDFVSGAGSMVRTLSAPQATPSAISTSRVAQEPIAFHSKRPEVATTAAATAARASTAVSRRGGRFHLLELPVEGPVNMVIGNRSAIV 812
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10614.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0M6_9PHAE1.090e-1434.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10614contigS-dermatodea_contig10614:3789..6909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size560
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10614.427.1prot_S-dermatodea_contig10614.427.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10614 4590..6909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.883949-UTR-S-dermatodea_contig10614:3788..38151622924165.883949-UTR-S-dermatodea_contig10614:3788..3815Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10614 3789..3815 +
1694079062.8469355-UTR-S-dermatodea_contig10614:3788..38151694079062.8469355-UTR-S-dermatodea_contig10614:3788..3815Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10614 3789..3815 +
1622924165.894181-UTR-S-dermatodea_contig10614:4584..45891622924165.894181-UTR-S-dermatodea_contig10614:4584..4589Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10614 4585..4589 +
1694079062.8583317-UTR-S-dermatodea_contig10614:4584..45891694079062.8583317-UTR-S-dermatodea_contig10614:4584..4589Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10614 4585..4589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.903608-CDS-S-dermatodea_contig10614:4589..46801622924165.903608-CDS-S-dermatodea_contig10614:4589..4680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10614 4590..4680 +
1694079062.8702314-CDS-S-dermatodea_contig10614:4589..46801694079062.8702314-CDS-S-dermatodea_contig10614:4589..4680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10614 4590..4680 +
1622924165.9136486-CDS-S-dermatodea_contig10614:5788..59581622924165.9136486-CDS-S-dermatodea_contig10614:5788..5958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10614 5789..5958 +
1694079062.8801968-CDS-S-dermatodea_contig10614:5788..59581694079062.8801968-CDS-S-dermatodea_contig10614:5788..5958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10614 5789..5958 +
1622924165.921752-CDS-S-dermatodea_contig10614:6642..69091622924165.921752-CDS-S-dermatodea_contig10614:6642..6909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10614 6643..6909 +
1694079062.8988483-CDS-S-dermatodea_contig10614:6642..69091694079062.8988483-CDS-S-dermatodea_contig10614:6642..6909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10614 6643..6909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10614.427.1

>prot_S-dermatodea_contig10614.427.1 ID=prot_S-dermatodea_contig10614.427.1|Name=mRNA_S-dermatodea_contig10614.427.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=176bp
MSGRERDILSLIRSGAVEGAFLLSKRGAPSDAVKGRNSMPENPRSSSSRA
QVPAPGTCHISISSASIGGTANRSMSAPARQRRVRNQVGGNQDRPLYAIV
SGNFIDKLGSIVLDLTTPLIVTPQMHLESLGILGRVPNERVTPRYPDRFA
LLELSVEPPVDIVVGSRYLVLRRPS*
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mRNA from alignment at S-dermatodea_contig10614:3789..6909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10614.427.1 ID=mRNA_S-dermatodea_contig10614.427.1|Name=mRNA_S-dermatodea_contig10614.427.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3121bp|location=Sequence derived from alignment at S-dermatodea_contig10614:3789..6909+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAGGAGGAGGTCGCTGCGCTGACTGGTAGGGAAATCTTTTGAGAGGGT
GCTCATTCTCGAGACACTCGACCATAAATGGCAGGAAAGGCAGAATCATG
TGTAACTTGCGTCGTTGGCAACATCATCGTCCGATTCGCAAACCAAAGGG
AGTCCTCTGTGGTTTGACAAGTATAGCATTGGCCTCTTGCGATTGCATTT
CTAACTGAGTTGTAACCACTGTCACTACCAAAGCATCCGTTGTATGTCCT
TGCTGGCTACCCCGATACATAGAAAACTGCCGTGTGTAGAGCCAGTCACT
TTGCCCGGGATACCAAAGAAGGGGAGCTAGTGCCTTCAAATCAGGGTAGC
TCTAATTCTTCAAATTGTTTTTTAGTTTTCGCGCTTGTGGGCTACATAAG
ACGTGGGTTCCGAGCTTCTCTGAATTATGTTCCGAGCGAGTTCGCGAAGT
TCAGTGGGGGGCATGCCCAGCTTCTAGCTTGCATTTCCTATCTTTACATA
TACAATGGACGTCACGCCAGACGGCACATTCTTCCCTTCCCAACATTGGG
CAGCACTGTTTAGCGACGGGAATTAGCAATCTCCACCTCTACCACCATAC
CAAGTGCTGCATCACCCACATTGAACAATTTATCACCAGACAACTGTTCC
TTTGAAAAGCCGAACCAAATACCTACGAAGACGCGAAGTATCCTTTGTGC
ATTGTTCCTATGAAGGAAAAACGACAGTGTGTACAACACCAGCAGCAAAC
TCCCTCTGATCCGGACATTCCTCCCTGTGATGTGACGCTCGATCAGGCTG
CATGTCAGGTCGAGAACGAGACATTTTGTCCTTGATCCGGTCAGGCGCTG
TGGAAGGGGCTTTTCTTCTGTCAAAGAGGGGTGCGCCGTCAGGTGTGGGC
ACTTATTTCTTCGACGAAGAGTTCAAGTCGAGTGTGTTGCCGGTCGAGGT
GTATACGACAGAACGAAGATACCAATTGCCTTCGAGACTGGAACAAAAAG
CCAGCGAGAAAATTCGAAACTGATCGCCCTTATTAATCAGGAGGTTGCCC
CATCGGTAGATTTCCTATGGGAAGAACTGAGTGACTGATTGGTTGATTAA
TCGGTTGATTGATTGATTTGATCATCACACTTGCAACCGATCGGCCCGCC
AACGGTTGCCGATCTCGCTCGTGACCAAACGAGAAATCGATAAATCGAAA
ACCTACGGAAGTGTATGTGCCGCACTTAATAATATGGAATGAGCACGACG
CTCGGATTCAGAGAGGGCATACCTCGGTGCTTAGGCCTGCTAAACAACCT
GGGATCCTCTCTACCGCAAAGGTTCATCACACTCTCGATGACTCAAGCCT
GGCAACCTCTACGCAAATACAACATATTGGCGCACCGTGCACCTCGAGCG
CAACAAGAAGGAAAGGAGGGGTCGATGGCACGTTGTGATAGTCCTATAAT
ATATGTGCCAGGCCCGACGTAGATAAAGCTGCGTCAACACAAGATGAAAG
CAGGGGTGACCGATGTAGGCTTGTTCCCGGGGAGATATGCCCTCCAGTAC
GGCATCTGCAACTCCAATTTGACATTTAGCACGCGAAGTGCCTTGCCGAC
GGAGGATCCAAACATACTAAATTACCGTTTTCTCGAACAAGGTTTCGCGT
GGTCATGCCAATCTCAAAGCTGCTACGTACTCGGTGGATGCTCAAAATTC
AAGCAACAACGGATTGCCTTCAATTCAACGCATAGAGCCCTACGGAGAAC
CACGTTTTCTTGCTGCGTGCTTCAACATAATATAGTGAACGAATATTCGA
TAGCCTGGCGAACTCTCATCGGGATGGTCGGATGAAATTCGTTGACTGCA
CGACGTAGTGTCACTTTGAACTGCTAAAAGGTACATGTGCTACAGAAGTA
CGCACCTACATCCGCTTCGCCGAAAATGATGCCCCCTACCACGCTTCATT
TTAGTGTTTTTTGCTTTTCTCGTGCGCGTTATTGACGTTTCACTGAGGAG
ACGCCGTGAAGGGACGCAATTCGATGCCAGAAAATCCTCGATCTTCGTCT
TCTCGAGCGCAAGTTCCAGCCCCTGGCACCTGTCATATCTCAATATCGTC
GGCCTCCATAGGCGGCACCGCCAACCGATCGATGTCAGCACCTGCTAGAC
AAAGGAGAGTCCGAAATCAGGTATTTTGGCTGAAGGAGTTGTTTACCTGG
TATGATCTGCATGGGGGATCCACGCGACTGTACCGCCGTACGGTACACAC
TCATTTCGGCTTTGCGGCAGCGCGATTATCAATAGATGATAATTACGCAT
GACAAGCTGTATCCCGCGGTGCGCCCTTGTTACATACGTTTAGTCGAGCT
TAAATAGCCGTACATAGCACGCTCGTTGCATTAACATTCGGTTGGCGAGA
GTCTGTACCACATCAGTTGACGTCGATATCGTGCTTTTCGCCGGCGGGCA
TTTTGCACATATATAGTGTATTCTACACTAGAGTTACGCGTTTGGACCTG
TAGCTGTAGGACGCGCCCCATGAACACTCCAGAGTGGTTAACTTCCCGGA
TGAATGCATACTCATTTATGTATATTGCATCGAATCCTCATGTTTGCACG
CCAACCTCAGCATAGCTTCAGAACGGATGCATCTTGGCACATCTCGGTCC
CGCTGGTAGCCGTCCGTTCCAACATAGAACCGACCTTATATCCCGGGCAT
GTATTGGATGTATTTGATCGGCACTGCCGCTCTCTTGCTGGGTGCGTATT
CCTACCAAACTCGAGCGTAGCGAAGAAGGGGCTAATCACAAGAGCGTCGA
TCGCTTAGGGTGGCATTTTAGCTCCGTTCTTACTCCCCAATGGTGTTTGT
CAAGGTGGGGGGAAATCAGGACAGGCCGCTGTATGCGATCGTGTCCGGGA
ATTTCATCGACAAGCTTGGATCTATCGTGTTGGATCTAACGACACCGCTG
ATAGTGACGCCTCAAATGCATCTGGAGTCGCTTGGGATCCTCGGACGTGT
ACCGAACGAGCGCGTGACCCCCCGGTATCCCGATCGTTTTGCTCTTCTGG
AGCTCTCGGTAGAGCCGCCTGTGGACATCGTCGTGGGAAGCAGGTACCTC
GTGTTGCGTAGGCCCTCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10614:3789..6909+

>mRNA_S-dermatodea_contig10614.427.1 ID=mRNA_S-dermatodea_contig10614.427.1|Name=mRNA_S-dermatodea_contig10614.427.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at S-dermatodea_contig10614:3789..6909+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCAGGTCGAGAACGAGACATTTTGTCCTTGATCCGGTCAGGCGCTGT
GGAAGGGGCTTTTCTTCTGTCAAAGAGGGGTGCGCCGTCAGATGTCAGGT
CGAGAACGAGACATTTTGTCCTTGATCCGGTCAGGCGCTGTGGAAGGGGC
TTTTCTTCTGTCAAAGAGGGGTGCGCCGTCAGACGCCGTGAAGGGACGCA
ATTCGATGCCAGAAAATCCTCGATCTTCGTCTTCTCGAGCGCAAGTTCCA
GCCCCTGGCACCTGTCATATCTCAATATCGTCGGCCTCCATAGGCGGCAC
CGCCAACCGATCGATGTCAGCACCTGCTAGACAAAGGAGAGTCCGAAATC
AGACGCCGTGAAGGGACGCAATTCGATGCCAGAAAATCCTCGATCTTCGT
CTTCTCGAGCGCAAGTTCCAGCCCCTGGCACCTGTCATATCTCAATATCG
TCGGCCTCCATAGGCGGCACCGCCAACCGATCGATGTCAGCACCTGCTAG
ACAAAGGAGAGTCCGAAATCAGGTGGGGGGAAATCAGGACAGGCCGCTGT
ATGCGATCGTGTCCGGGAATTTCATCGACAAGCTTGGATCTATCGTGTTG
GATCTAACGACACCGCTGATAGTGACGCCTCAAATGCATCTGGAGTCGCT
TGGGATCCTCGGACGTGTACCGAACGAGCGCGTGACCCCCCGGTATCCCG
ATCGTTTTGCTCTTCTGGAGCTCTCGGTAGAGCCGCCTGTGGACATCGTC
GTGGGAAGCAGGTACCTCGTGTTGCGTAGGCCCTCGTGAGTGGGGGGAAA
TCAGGACAGGCCGCTGTATGCGATCGTGTCCGGGAATTTCATCGACAAGC
TTGGATCTATCGTGTTGGATCTAACGACACCGCTGATAGTGACGCCTCAA
ATGCATCTGGAGTCGCTTGGGATCCTCGGACGTGTACCGAACGAGCGCGT
GACCCCCCGGTATCCCGATCGTTTTGCTCTTCTGGAGCTCTCGGTAGAGC
CGCCTGTGGACATCGTCGTGGGAAGCAGGTACCTCGTGTTGCGTAGGCCC
TCGTGA
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