mRNA_S-dermatodea_contig10588.409.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10588.409.1
Unique NamemRNA_S-dermatodea_contig10588.409.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10588.409.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 3.630e-42
Identity = 85/177 (48.02%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:    4 CFNLFGGCAYHIHAEKHKSRFALVLPGLHDIDLRGSVTTTS-EESYELMVQPFDRSSIEHLFGHLFKAHAVNPLEAPGVLPYAVKNVCSVMRERLQHANLPLYYYKHITDSSHPDVVRVVDAAEAEPSNSNVLYQEVICVIFLLVTVDEGSMLKIQVEVAAQHRNVVGFDYVFEVVF 531
            CFN+FGGCAY +HA   KSRFA +LPGLHD+D+RGSV     ++      QPF+R SI+ LF    +  A NPL+ PGVL + +K +C+++R RL  ++ PL Y +HI D+  PD V V+ A  +      VL++EV+   FLLV VDE  +LK+QVEV A+  +VVG D+VFE++F
Sbjct:   79 CFNIFGGCAYQVHAMNDKSRFAHILPGLHDVDVRGSVKLVGGKDGKGRCAQPFERISIDQLF----ETQAPNPLDEPGVLAHVLKKICTIVRRRLLRSDPPLRYDRHINDNPFPDRVDVLHAPVSSSRRPGVLHEEVVGDHFLLVIVDEVDLLKVQVEVRAKLGSVVGVDHVFELIF 251
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10588.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW74_9PHAE3.630e-4248.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10588contigS-dermatodea_contig10588:578..1108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-147
Ec32 orthologEc-06_005020.1
Exons1
Model size531
Cds size531
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.2479763-CDS-S-dermatodea_contig10588:577..11081622924164.2479763-CDS-S-dermatodea_contig10588:577..1108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10588 578..1108 -
1694079061.596298-CDS-S-dermatodea_contig10588:577..11081694079061.596298-CDS-S-dermatodea_contig10588:577..1108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10588 578..1108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10588.409.1prot_S-dermatodea_contig10588.409.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10588 578..1108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10588.409.1

>prot_S-dermatodea_contig10588.409.1 ID=prot_S-dermatodea_contig10588.409.1|Name=mRNA_S-dermatodea_contig10588.409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=177bp
MCFNLFGGCAYHIHAEKHKSRFALVLPGLHDIDLRGSVTTTSEESYELMV
QPFDRSSIEHLFGHLFKAHAVNPLEAPGVLPYAVKNVCSVMRERLQHANL
PLYYYKHITDSSHPDVVRVVDAAEAEPSNSNVLYQEVICVIFLLVTVDEG
SMLKIQVEVAAQHRNVVGFDYVFEVVF
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mRNA from alignment at S-dermatodea_contig10588:578..1108-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10588.409.1 ID=mRNA_S-dermatodea_contig10588.409.1|Name=mRNA_S-dermatodea_contig10588.409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at S-dermatodea_contig10588:578..1108- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGTTTCAACCTTTTCGGTGGTTGTGCATATCATATACATGCAGAGAA
ACACAAGTCCCGTTTCGCTCTTGTTCTTCCCGGCCTTCACGATATCGACC
TTAGAGGGTCGGTGACAACCACCAGCGAAGAAAGCTACGAGTTGATGGTT
CAACCGTTCGACAGAAGCTCCATCGAGCACCTTTTCGGGCACCTTTTCAA
AGCGCACGCAGTTAACCCCCTGGAAGCACCAGGCGTGCTACCCTACGCCG
TAAAAAACGTTTGTTCGGTCATGCGCGAACGCCTGCAACACGCTAACCTT
CCTCTGTACTACTACAAGCACATCACCGACAGCTCCCACCCCGATGTAGT
GCGTGTGGTGGATGCGGCTGAGGCGGAACCATCAAACTCAAACGTTCTGT
ATCAGGAAGTAATATGTGTTATATTCCTTTTAGTAACTGTGGACGAGGGA
AGCATGTTAAAGATTCAGGTCGAAGTGGCAGCGCAACACAGAAACGTGGT
CGGCTTTGATTATGTATTTGAAGTGGTATTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10588:578..1108-

>mRNA_S-dermatodea_contig10588.409.1 ID=mRNA_S-dermatodea_contig10588.409.1|Name=mRNA_S-dermatodea_contig10588.409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at S-dermatodea_contig10588:578..1108- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGTTTCAACCTTTTCGGTGGTTGTGCATATCATATACATGCAGAGAA
ACACAAGTCCCGTTTCGCTCTTGTTCTTCCCGGCCTTCACGATATCGACC
TTAGAGGGTCGGTGACAACCACCAGCGAAGAAAGCTACGAGTTGATGGTT
CAACCGTTCGACAGAAGCTCCATCGAGCACCTTTTCGGGCACCTTTTCAA
AGCGCACGCAGTTAACCCCCTGGAAGCACCAGGCGTGCTACCCTACGCCG
TAAAAAACGTTTGTTCGGTCATGCGCGAACGCCTGCAACACGCTAACCTT
CCTCTGTACTACTACAAGCACATCACCGACAGCTCCCACCCCGATGTAGT
GCGTGTGGTGGATGCGGCTGAGGCGGAACCATCAAACTCAAACGTTCTGT
ATCAGGAAGTAATATGTGTTATATTCCTTTTAGTAACTGTGGACGAGGGA
AGCATGTTAAAGATTCAGGTCGAAGTGGCAGCGCAACACAGAAACGTGGT
CGGCTTTGATTATGTATTTGAAGTGGTATTTATGTGTTTCAACCTTTTCG
GTGGTTGTGCATATCATATACATGCAGAGAAACACAAGTCCCGTTTCGCT
CTTGTTCTTCCCGGCCTTCACGATATCGACCTTAGAGGGTCGGTGACAAC
CACCAGCGAAGAAAGCTACGAGTTGATGGTTCAACCGTTCGACAGAAGCT
CCATCGAGCACCTTTTCGGGCACCTTTTCAAAGCGCACGCAGTTAACCCC
CTGGAAGCACCAGGCGTGCTACCCTACGCCGTAAAAAACGTTTGTTCGGT
CATGCGCGAACGCCTGCAACACGCTAACCTTCCTCTGTACTACTACAAGC
ACATCACCGACAGCTCCCACCCCGATGTAGTGCGTGTGGTGGATGCGGCT
GAGGCGGAACCATCAAACTCAAACGTTCTGTATCAGGAAGTAATATGTGT
TATATTCCTTTTAGTAACTGTGGACGAGGGAAGCATGTTAAAGATTCAGG
TCGAAGTGGCAGCGCAACACAGAAACGTGGTCGGCTTTGATTATGTATTT
GAAGTGGTATTT
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