mRNA_S-dermatodea_contig10583.407.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI) HSP 1 Score: 348 bits (894), Expect = 5.290e-107 Identity = 177/238 (74.37%), Postives = 202/238 (84.87%), Query Frame = 1
Query: 154 EAGVSLALEVLQAAATLAQEFLSDKDRVAPRALLETAVQLHGILFSLQGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQVRFYD 861
+A VSLA+EVL A+ATLA EFL+DK+RVAPRAL++TAV LH I+ SLQGLQG AL+ VIAKVCEMWWTQ+RPG EHLV L+P+MLVRSL AKEADVKR+ ++ LLLDFEDESS SLRALL R F+SP+YLK SEGKRLLA FFGLHPSLV H VMKAQMPG K++VLAAYGEVYFRVWRG EG YLE+VEM CLQDLMHACIHASTPKMH N+L+VL+ LHSQK+V+ D
Sbjct: 161 QASVSLAMEVLYASATLAHEFLADKERVAPRALVDTAVYLHDIVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLRTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGTEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVD 398
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE) HSP 1 Score: 343 bits (879), Expect = 3.810e-105 Identity = 175/234 (74.79%), Postives = 198/234 (84.62%), Query Frame = 1
Query: 166 SLALEVLQAAATLAQEFLSDKDRVAPRALLETAVQLHGILFSLQGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQVRFYD 861
S ++VL AAATLA EFL+DK+RVAPRAL++TAV LH I+ SLQGLQG AL+ VIAKVCEMWWTQ+RPG EHLV L+P+MLVRSL AKEADVKR+ ++ LLLDFEDESS SLRALL R F+SP+YLKSSEGKRLLA FFGLHPSLV H VMKAQMPG K++VLAAYGEVYFRVWRGAEG YLE+VEM CLQDLMHACIHASTPKMH N+LVVL+ LHSQK+ + D
Sbjct: 38 SRQVQVLYAAATLAHEFLADKERVAPRALVDTAVYLHDIVLSLQGLQGEALRRVIAKVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHAVKGALLLLDFEDESSDSLRALLLRTFMSPVYLKSSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILVVLEGLHSQKKAKGVD 271
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: W7TM42_9STRA (Condensin-2 complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA) HSP 1 Score: 228 bits (580), Expect = 4.580e-64 Identity = 105/216 (48.61%), Postives = 148/216 (68.52%), Query Frame = 1
Query: 220 SDKDRVAPRALLETAVQLHGILFSLQGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQVRFYD 861
S D P LL+ V LH +LF L G+ G ALQG I +VCE WW Q R G E LV Q +P ++ RSL++ A+EA VKRV +R LLLD+E+E++ R LL + F+ P YLKS++G+RLL + FGLHPSLV+ H+ +K+Q+P K+ ++ AYG+VYFR WR AEG YLE +E C+QDLMHA +H ++P ++ L ++L + H+ K++R D
Sbjct: 135 SSADSATPEGLLQVMVALHDVLFQLSGIDGEALQGAIVRVCEQWWKQGRGGAEFLVAQTVPYLVARSLEEDAREALVKRVYALRGALLLLDYEEEATGPFRELLLQCFLKPTYLKSADGRRLLTFLFGLHPSLVVDIHETVKSQLPYAKKKLVQAYGDVYFRAWRAAEGPYLEAIETGCVQDLMHAAVHCASPSLYATLRLLLQSFHANKRLREVD 350
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: A0A835YRM8_9STRA (Condensin II non structural maintenance of chromosomes subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM8_9STRA) HSP 1 Score: 219 bits (557), Expect = 5.680e-61 Identity = 118/250 (47.20%), Postives = 153/250 (61.20%), Query Frame = 1
Query: 154 EAGVSLALEVLQAAATLAQEFLSDKDRVAPRALLETAVQLHGILFSLQGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRVM--RTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGT------------YLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQVRFYD 861
+A VS++LE++ A TLA FL+DK R AP +LL T LHGIL LQG +G ALQ IA+ CE WW ERPGGEHLV LLP +L+R+LD A++ADV+R+ R LLLD+ED + RALL RAF++P +L+ G+R LA FGLHP+ H V+ AQ+P +R+VLAAYGEVYFR WRGA+G Y +E C+Q LM VLDA H+Q++ + D
Sbjct: 114 DAVVSISLELMDAITTLAGLFLADKKRAAPPSLLSTMAALHGILLYLQGAEGAALQTAIARACEAWWRAERPGGEHLVACLLPYLLLRALDPAARDADVRRLCDARGALLLLDWEDADAEGTRALLLRAFLAPAFLRGDAGRRFLASVFGLHPAFAARIHAVVSAQLPRARRAVLAAYGEVYFRAWRGADGXXXXXXXXXXXXXYAAEIEGACMQPLMXXXXXXXXXXXXXXARGVLDAFHAQRRQKGVD 363
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: L8GEA4_ACACA (HEAT repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEA4_ACACA) HSP 1 Score: 200 bits (509), Expect = 1.450e-54 Identity = 100/237 (42.19%), Postives = 151/237 (63.71%), Query Frame = 1
Query: 172 ALEVLQAAATLAQEFLSDKDRVAPRALLETAVQLHGILFSLQGLQGTA----LQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQVRFYDQ 864
ALE L+A A LA F++ KDR+AP +L ++ LHGIL + ++G L IA++CE WW Q+R E LVP + +++++L++GAK A +KR+ R+ LLLDF+D+SS L+ LL R FI P++L++++GK+ L Y FGLHP + HD +K Q+P +S+L AYGEVYF+ W+ A+G YL ++E CLQDL+ +H + L VL +H QK+ + D+
Sbjct: 150 ALEYLRAVALLASLFIASKDRIAPDSLFDSVALLHGILLDVLAIKGAGHALLLHNEIAQLCETWWKQDRTQKEALVPLTIFYLVLQTLEEGAKTATIKRLYDFRSALLLLDFQDDSSTQLKGLLLRCFIHPMFLRAADGKKFLVYLFGLHPPYIDAIHDTIKGQLPACPKSLLEAYGEVYFKAWKVAQGPYLLKLEYTCLQDLISCAVHVQNEAVVSGLRKVLRHIHEQKKQKGVDE 386
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.970e-53 Identity = 100/200 (50.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query: 271 LHGILFSLQGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQVRFYDQ 864
+H +LF L + A Q I K CE WWTQ R G E LV QLLP +L+RSL++GA DVKRV +R+ F LLDFEDES SL+ LL R I PLY+ ++G+R LA+ F LHP+ V HD +K QMP +R V AAYGEVYF+ WR +EG ++E C+QDLMH +HAS P M VL A ++K+ R D+
Sbjct: 3 MHNVLFYLMVREAAACQMSIMKACERWWTQARAGREGLVVQLLPTLLMRSLEEGAAPGDVKRVYAVRSAFELLDFEDESIDSLKELLLRCVIHPLYVSRADGRRFLAFLFSLHPTFVDDLHDTIKNQMPSTRR-VHAAYGEVYFKAWRNSEGELTLKIERGCVQDLMHRGVHASLPAMFAATRQVLAAFINEKRSRGVDE 201
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: UPI000F554239 (condensin-2 complex subunit G2-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F554239) HSP 1 Score: 180 bits (457), Expect = 1.270e-47 Identity = 102/222 (45.95%), Postives = 139/222 (62.61%), Query Frame = 1
Query: 217 LSDKDRVAPRALLETAVQLHGILFSL-QGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHAS---TPKMHGNLLVVLDALHSQKQVRFYDQ 864
+ +K P A LETA LHG+L SL +G + +LQ IA++CE+W+ E G E L+ Q P +++RSL G +DVKRV +R LL+DF+D+SS SL+ LL + I P YLK EG+R L+Y FGL+P L FH +K Q+P +VL+ YGEVYFR WR A G YL+ +E +C+QDLM A +HA T M L VL+ +H QK+ R D+
Sbjct: 105 MPEKPTHVPSAFLETAAILHGLLMSLPEGSE--SLQNDIAQLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLLHQCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDE 323
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: A0A2B4SM72_STYPI (Condensin-2 complex subunit G2 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SM72_STYPI) HSP 1 Score: 174 bits (441), Expect = 1.660e-45 Identity = 103/236 (43.64%), Postives = 143/236 (60.59%), Query Frame = 1
Query: 175 LEVLQAAATLAQEFLSDKDRVAPRALLETAVQLHGILFSL-QGLQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHAS---TPKMHGNLLVVLDALHSQKQVRFYDQ 864
LE + A A + +K A LETAV LHG+L SL +G + +LQ IA++CE+W+ E G E L+ Q P ++++SL G +DV RV +R L+DF+D+SS SL+ LL + I P+YLK EG+R L+Y FGL+P L FH +K Q+P +VL+ YGEVYFR WR A G YL+ +E +C+QDLM A +HA T M L VL+ +H QK+ R D+
Sbjct: 87 LEGVTKVALCALAVILEKSTHVSSAFLETAVILHGLLMSLPEGYE--SLQNDIAQLCELWFLNELEGKEELITQAFPYLIIKSLGRGII-SDVNRVWSLRQCLHLMDFDDDSSESLKQLLHQCMIHPVYLKLEEGRRFLSYAFGLNPGLSKEFHRTIKNQIPYCSMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTQSMASRLRKVLEYIHQQKKQRGVDE 319
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: A0A3M6U8W1_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U8W1_POCDA) HSP 1 Score: 163 bits (413), Expect = 4.740e-45 Identity = 88/189 (46.56%), Postives = 120/189 (63.49%), Query Frame = 1
Query: 313 ALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHAS---TPKMHGNLLVVLDALHSQKQVRFYDQ 864
+LQ IA++CE+W+ E G E L+ Q P +++RSL G +DVKRV +R LL+DF+D+SS SL+ LL + I P YLK EG+R L+Y FGL+P L FH +K Q+P +VL+ YGEVYFR WR A G YL+ +E +C+QDLM A +HA T M L VL+ +H QK+ R D+
Sbjct: 9 SLQNDIAQLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLLHQCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDE 196
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Match: A0A0L0D587_THETB (Condensin-2 complex subunit G2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D587_THETB) HSP 1 Score: 168 bits (426), Expect = 1.770e-43 Identity = 96/227 (42.29%), Postives = 129/227 (56.83%), Query Frame = 1
Query: 175 LEVLQAAATLAQEFLSDKDRVAPRALLETAVQLHGILFSLQG-LQGTALQGVIAKVCEMWWTQERPGGEHLVPQLLPLMLVRSLDDGAKEADVKRV--MRTGFLLLDFEDESSHSLRALLFRAFISPLYLKSSEGKRLLAYFFGLHPSLVLHFHDVMKAQMPGGKRSVLAAYGEVYFRVWRGAEGTYLERVEMHCLQDLMHACIHASTPKMHGNLLVVLDALHSQKQ 846
L VL A + Q L+D+ R A +++ A LH I+ L L G AL+ IA CE WWT +PG E LVPQ L +LVR L G DVKRV MRT F LLDFE ES+ S++ L+ R SPL+L ++ G + LA+ F L H MK QMP K +L +YGEVYF+ W+ A + +E + +Q+LM A +HAS+ + L VL A H +K+
Sbjct: 61 LRVLSGVAFVMQRVLADEARKASKSMFAVASLLHDIILVLPNTLDGDALKNEIALFCETWWTHAKPGREALVPQTLCYLLVRGLSPGGTPGDVKRVAAMRTAFELLDFEHESTESIKDLILRTLFSPLFLGAAAGIKFLAHMFNLSGPFASEMHVTMKGQMPMAKLKMLNSYGEVYFKAWKTAGAASRDAIEYNFVQELMSAGVHASSKGLAAALRAVLGAFHERKR 287 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10583.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10583.407.1 >prot_S-dermatodea_contig10583.407.1 ID=prot_S-dermatodea_contig10583.407.1|Name=mRNA_S-dermatodea_contig10583.407.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=288bp PERPSTPPSAGLEPPPRRPRRGGGGGGGATAGEGVGGGKFGENCAGGNGRback to top mRNA from alignment at S-dermatodea_contig10583:113..7769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10583.407.1 ID=mRNA_S-dermatodea_contig10583.407.1|Name=mRNA_S-dermatodea_contig10583.407.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7657bp|location=Sequence derived from alignment at S-dermatodea_contig10583:113..7769- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10583:113..7769- >mRNA_S-dermatodea_contig10583.407.1 ID=mRNA_S-dermatodea_contig10583.407.1|Name=mRNA_S-dermatodea_contig10583.407.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at S-dermatodea_contig10583:113..7769- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |