mRNA_S-dermatodea_contig10423.309.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10423.309.1
Unique NamemRNA_S-dermatodea_contig10423.309.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10423.309.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.170e-29
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:   22 VGQEVSVEVASKTFDRKAKVAQRHSESMLMNGISVERTDLAPTPGLIMHGTGDKSPALWKMYVRAPYVVQNGLA 243
            VG EVSVE++  TFDR  +V +RHS+ ML+NG+SVER DLAPTPGL+MHG+GD +PALW++Y RAPYVVQNGLA
Sbjct: 1288 VGDEVSVEISPNTFDRNKRVVERHSQGMLVNGVSVERADLAPTPGLVMHGSGDDAPALWRLYTRAPYVVQNGLA 1361
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10423.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB77_ECTSI4.170e-2970.27SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10423contigS-dermatodea_contig10423:7106..7825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.1448815-CDS-S-dermatodea_contig10423:7105..72061622924157.1448815-CDS-S-dermatodea_contig10423:7105..7206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10423 7106..7206 +
1694079056.7105002-CDS-S-dermatodea_contig10423:7105..72061694079056.7105002-CDS-S-dermatodea_contig10423:7105..7206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10423 7106..7206 +
1622924157.1624875-CDS-S-dermatodea_contig10423:7683..78251622924157.1624875-CDS-S-dermatodea_contig10423:7683..7825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10423 7684..7825 +
1694079056.722781-CDS-S-dermatodea_contig10423:7683..78251694079056.722781-CDS-S-dermatodea_contig10423:7683..7825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10423 7684..7825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10423.309.1prot_S-dermatodea_contig10423.309.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10423 7106..7825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10423.309.1

>prot_S-dermatodea_contig10423.309.1 ID=prot_S-dermatodea_contig10423.309.1|Name=mRNA_S-dermatodea_contig10423.309.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
PGVEVEDVGQEVSVEVASKTFDRKAKVAQRHSESMLMNGISVERTDLAPT
PGLIMHGTGDKSPALWKMYVRAPYVVQNGLA
back to top

mRNA from alignment at S-dermatodea_contig10423:7106..7825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10423.309.1 ID=mRNA_S-dermatodea_contig10423.309.1|Name=mRNA_S-dermatodea_contig10423.309.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig10423:7106..7825+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGGAGTCGAAGTTGAAGACGTCGGGCAAGAGGTGTCGGTGGAGGTTGC
CTCGAAGACGTTTGATCGGAAGGCAAAGGTGGCGCAGAGACACTCCGAGA
GGTGTGTTTGTGTTTTGTTTTGTTTGTGATGGTCTTGGTTGTCACCGCCG
TTGGTGGTTCGGAGTATAAGAGCTACGCGATTGACGCGGTGGCTCGTTCA
CCGTCGTATTACAGAGCCTACTGCAAATATTGGCTGGCCTGCTGGTTGCG
GGGCATAGCGTGTGCAGATAGATGCTGAACAGTAGTGCGAGTTTAGTTGT
GCTGTTTTTTTTTTACACTTTCTCGAACGAATTAAACGCGCTTTTTTTGC
AAAGGCGACCGGCCAACACACTCTTACTTGCAGTATTTTGTTGATGTGTA
TTATTAATAGCTGAAAAGCCATACCGAGCGCGAAAGAAAGCAGTTCAGAG
CAATAGAGTTCTAATCTCGCGGCCGTTCGTGCATTATGAAAGCACCAGAG
CTAAAAAAAACAACCCCACCGCTCCCCCCGATTTTTTCTCCACTTCGTCG
AACCCCCCCCCCCCCTCCAAAACCACAGCATGCTTATGAACGGCATCTCG
GTGGAGCGCACCGATCTCGCCCCTACCCCAGGACTCATCATGCACGGCAC
GGGCGACAAATCCCCGGCACTGTGGAAGATGTACGTCCGGGCGCCGTACG
TCGTCCAAAACGGCCTTGCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10423:7106..7825+

>mRNA_S-dermatodea_contig10423.309.1 ID=mRNA_S-dermatodea_contig10423.309.1|Name=mRNA_S-dermatodea_contig10423.309.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig10423:7106..7825+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGGAGTCGAAGTTGAAGACGTCGGGCAAGAGGTGTCGGTGGAGGTTGC
CTCGAAGACGTTTGATCGGAAGGCAAAGGTGGCGCAGAGACACTCCGAGA
GCCTGGAGTCGAAGTTGAAGACGTCGGGCAAGAGGTGTCGGTGGAGGTTG
CCTCGAAGACGTTTGATCGGAAGGCAAAGGTGGCGCAGAGACACTCCGAG
AGCATGCTTATGAACGGCATCTCGGTGGAGCGCACCGATCTCGCCCCTAC
CCCAGGACTCATCATGCACGGCACGGGCGACAAATCCCCGGCACTGTGGA
AGATGTACGTCCGGGCGCCGTACGTCGTCCAAAACGGCCTTGCGCATGCT
TATGAACGGCATCTCGGTGGAGCGCACCGATCTCGCCCCTACCCCAGGAC
TCATCATGCACGGCACGGGCGACAAATCCCCGGCACTGTGGAAGATGTAC
GTCCGGGCGCCGTACGTCGTCCAAAACGGCCTTGCG
back to top