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Homology
BLAST of mRNA_S-dermatodea_contig10423.308.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI) HSP 1 Score: 206 bits (525), Expect = 1.500e-56 Identity = 122/227 (53.74%), Postives = 153/227 (67.40%), Query Frame = 2
Query: 2 PGSMRINMSDPRGAATLSGEMTAKSHFVLNATTGLTSLACTIFDTQDYANTRYSTTSVYTELRYGTGEDDDGSRLLTIENHLGVPVTVSLERTDDAGEDALDTSSSRGLHFGRKSKNSP---PQSSGKTISTS-TKLAASLYAKKGKAEANPQETRAGMAGTPADRISLGELLVPDAKKSLQTATVTVAVKGFQPLSGVPLDLLGRGTHVFKMTRYEAQSPSMHKKR 670
P SM I MSDPRG +T G+M A HFVLN TTGLTSLAC+I +++DYA TRYSTTSVYTELR G + DDG+RLLTIENHLGVPV V+LE DDA + +G FG K P P++ S + ++A++LY Q+ G G P+DR+S+GEL VP+AK +L TATVT+ KGF+P++GVPLDLLGRGTHV++MTR SP H +R
Sbjct: 2053 PWSMSIQMSDPRGESTPRGQMIADQHFVLNVTTGLTSLACSIMESRDYAKTRYSTTSVYTELRDGN-DGDDGTRLLTIENHLGVPVRVTLE--DDASSSGA-AAREKGRPFGLKKAGRPAAAPEAPADATSGNFCRIASTLY---------DQQEGGGEDGPPSDRVSVGELTVPNAKMALPTATVTIKAKGFEPVTGVPLDLLGRGTHVYRMTRSGPTSPCPHTRR 2266
BLAST of mRNA_S-dermatodea_contig10423.308.1 vs. uniprot
Match: A0A6H5K9P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P2_9PHAE) HSP 1 Score: 198 bits (503), Expect = 1.260e-54 Identity = 116/216 (53.70%), Postives = 145/216 (67.13%), Query Frame = 2
Query: 2 PGSMRINMSDPRGAATLSGEMTAKSHFVLNATTGLTSLACTIFDTQDYANTRYSTTSVYTELRYGTGEDDDGSRLLTIENHLGVPVTVSLERTDDAGEDALDTSSSRGLHFGRKSKNSPPQSSGKTISTST-----KLAASLYAKKGKAEANPQETRAGMAGTPADRISLGELLVPDAKKSLQTATVTVAVKGFQPLSGVPLDLLGRGTHVFKMTR 634
P SM I MSDPRG +T G+M A HFVLN TTGLTSLAC+I +++DYA TRYSTTSVYTELR G + DDG RLLTIENHLGVPV V+LE DD + +G FG K P + + +T ++A++LY Q+ G G P+DR+S+GEL VP+AK +L TATVT+ KGF+P++GVPLDLLGRGTHV++MTR
Sbjct: 516 PWSMSIKMSDPRGESTPRGQMIADQHFVLNVTTGLTSLACSIMESRDYAKTRYSTTSVYTELRDGN-DGDDGMRLLTIENHLGVPVRVTLE--DDTSSSGA-AAHEKGRPFGSKKTGRPAAAPPAAPADATSGNFCRIASTLY---------DQQGGGGEDGPPSDRVSVGELTVPNAKMALPTATVTIKAKGFEPVTGVPLDLLGRGTHVYRMTR 718
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 206.5 |
| Seed ortholog evalue | 1.7e-50 |
| Seed eggNOG ortholog | 2880.D8LB75 |
| KEGG rclass | RC00055,RC00523 |
| KEGG ko | ko:K01870,ko:K02183,ko:K12486 |
| KEGG Reaction | R03656 |
| KEGG Pathway | ko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| KEGG Module | M00359,M00360 |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759 |
| EC | 6.1.1.5 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 886 |
| Cds size | 876 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924157.0632687-UTR-S-dermatodea_contig10423:3498..3508 | 1622924157.0632687-UTR-S-dermatodea_contig10423:3498..3508 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10423 3499..3508 + |
| 1694079056.6360605-UTR-S-dermatodea_contig10423:3498..3508 | 1694079056.6360605-UTR-S-dermatodea_contig10423:3498..3508 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10423 3499..3508 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10423.308.1 >prot_S-dermatodea_contig10423.308.1 ID=prot_S-dermatodea_contig10423.308.1|Name=mRNA_S-dermatodea_contig10423.308.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=292bp
MRINMSDPRGAATLSGEMTAKSHFVLNATTGLTSLACTIFDTQDYANTRY
STTSVYTELRYGTGEDDDGSRLLTIENHLGVPVTVSLERTDDAGEDALDT
SSSRGLHFGRKSKNSPPQSSGKTISTSTKLAASLYAKKGKAEANPQETRA
GMAGTPADRISLGELLVPDAKKSLQTATVTVAVKGFQPLSGVPLDLLGRG
THVFKMTRYEAQSPSMHKKRWRFEGLVVKFVARPARDPAVLDLAMQLQTN
VFLKNDTPRPLRVSLSRERDHEPNTMIPVDGEVCLPFPLLSE back to topmRNA from alignment at S-dermatodea_contig10423:3499..6955+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10423.308.1 ID=mRNA_S-dermatodea_contig10423.308.1|Name=mRNA_S-dermatodea_contig10423.308.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3457bp|location=Sequence derived from alignment at S-dermatodea_contig10423:3499..6955+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGGCAGCATGCGCATCAATATGAGCGACCCACGCGGCGCAGCAACGC
TCAGCGGGGAGATGACGGCGAAGAGTCACTTCGTCTTGAACGCAACCACT
GGCCTCACGTCGCTAGCTTGCACCATCTTTGACACACAGGACTACGCAAA
TACAAGGTGACACTCCTGGGGCACGACGAGAGCGTGATATTTTGTCTTTG
TAGCTTTGCGCGCGTGTGTGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGG
GCGGGGGGGGAGGGGGGGGGGGGGCAGGGGCAGAACACAGCGGACGCTGA
CGCTCGCACCTCGATTTGTTGTGCACTGAAAGCGCCCTCAAATTTCAGTG
CAGCGCTGAGCGCGCGACTGGCCATTTCTTCGTGTTTTTTTTACAAAGCA
TACCCGTCGCTCCATTGTGTTATCTTGTTGTTTGTTATCATGCTGCGCGT
TCGTGGTATGTTGTTCTCCAGGTATTCCACGACGTCCGTGTACACGGAAT
TGCGGTATGGGACCGGAGAGGACGACGATGGTTCCCGCCTCCTTACGATC
GAGAACCACCTGGGCGTACCGGTGACCGTGTCGTTGGAGCGCACCGACGA
TGCCGGAGAGGACGCTTTGGACACGTCGTCTTCGCGAGGGCTGCATTTCG
GCAGAAAGTCCAAGTAAGTGCCAGTTTGAATATACCGTGCGCGAAAACAC
GTATATGTTGTTGTGCTAAGAGTCTTGTCGGCTCCATCGATCGTCGCACA
TTCTGATGGATCGGTTGCTTCGCGGGCATCGAGCGGGATATGTATGTGTC
CCACGCTGATCCGGAGGACTTCTCGTAAGTGCCGAGCGAGCTGTCATCGC
CACTCGCGCGACTCGTATTCCCCACAGACGGTCAAAATGACGGGCGTTTA
TGGATGACAGAGCCGAGCGTATGCATCAGGCGGGCATCTTGGCTGAGGTT
GGGGTTATACCGCACCCCGGGAATAGTATATCATCTATCCGTGTTCCGGT
GCCTGCCGCCTGCTTGACAACATACATTCCTCCCACCAAAAACTCTCACA
TCGCGCGAGAGAATTGAGAAATGCTCATTTGGCAACACCCCATCGCACCT
CCAGAGGTAAAGACCACGACATTTACGCAGAGTGTTCGCGAGCCTGCAAA
TCGCTGCGCTAGTTCGGCACAGCTCCAAACAGCCCCACGTGGGGTTTGGG
TGTGCCGTTGAAGGTAGGGCCATTCAGCGCTAAGGCAACCTGATCGTGGT
TGACCAACCCGGTGCGCAACCACTGCCGTCCTGTATAACAGCGCCGTTCA
CGTTTTTCTGCAAACCCGGTCCGAAATTATCCGGCACGCGCTGTTCCGCA
ATCCTCCAGAAACTCTCCCCCGCAGTCGTCGGGGAAGACCATCAGCACAA
GCACCAAACTTGCCGCTTCGCTGTACGCGAAAAAGGGCAAGGCTGAGGCC
AACCCGCAGGAGACGAGAGCTGGCATGGCTGGCACACCGGCTGACCGCAT
CAGCCTCGGGGAGCTGCTGGTTCCCGACGCGAAGAAGTCACTCCAGACAG
CCACGGTGACAGTGGCAGTGAAGGGTTTCCAGCCGTTGTCAGGCGTTCCT
CTCGACCTGCTCGGCCGTGGGACGCACGTCTTCAAGATGACCAGGGTAAA
AAATTGAGCTGCGACACACGCGAGAGCGCGTTCTCTAACGCGCAATTTTT
TGTTTTTGCGGCGGGCGGCGGCAGCGGCAGCGGCGAGCTTTTGTTTGTTT
GTGTTTTTTGTCATTCAATATGCGTAGTATCGCCTTTTGCGGTCGCGGTC
CGCTTTAATTGGCCGGTTTCGTGTTTTTTCGTGTCGTTCTGGCGGTTAAA
TCGCGCGCTGCCCTTAACCCTTTTGGGACTAAGGCTGTTTTCGGGTAACT
GTTTGCTATCATTACATATCCTCTTGTTTTGCGACTAAGGCTGTTTTCGG
GTAACTGTTTGATATTATGGTAGCCAACAGTTACCCGAAAACAGCATTAG
TCCCAAAGGGTTAAGACGCGTTTATCCACGAGCTCCTTGAGTTTTTTTTT
TAACAGCAGAGACATTAAGTGCGCTCCACTATTTCAGTATAGTCACCCGC
TGTTTGTCGTGCGCATGCATCCCTTGGGAGTAAGGCCCAGCCTCCATAGG
TCTCCTGCATCGAGGTAGGGCGAGAAAGGTGCGACGCTCGCTCATGACAG
TTTTTGTGATGACACCGCGAGAAAATCCATCGATTTCTTGCGGCTATTCC
CCTCCCCCCTCCTATCACGAGGGCGACGACGACGACGATCACCACCACCA
CCGCCGCCGCGGGAAACTCGTACTGTGCGCCCCGTTTGCTCACCACAACC
CCGCGCGCTTCTTTGCACTTGGCGCGTTGTGACGTTTCATCGTGCGTCGA
ACGCTCGACCTTGCAGTACGAGGCCCAGTCTCCGAGCATGCACAAGAAGC
GGTGGCGGTTCGAAGGGCTTGTGGTGAAGTTCGTGGCGCGCCCGGCACGA
GATCCTGCCGTCCTCGACCTGGCCATGCAGCTACAGACGAACGTGAGAGC
GTAGGGCAACAGGGGGACGCAATTGTGGTTTTTGTTTTTTGTTTTTTGTT
CTCGGGCAAGGGCAAAAGGGCGACAAGGGACAGCGGGCACTGCTGCACCT
CTGGAGGTGCCTCTGTTCGCGGACGGGTGCGACGGACGGTGATGAACGCC
AATTCTTCTTAAGACTCGCCTCGGGGTCGGAAAAACTGCGGGAGCTCCTG
CTTGTCGTGCTTCAAGGGACTGGCTTTGTGGCCCCTTACAGTTTTCGGTT
GCGTGTCTGCTGTGTATTATTAGTCGTGCGTGGTGGGTGAAACGGGAGGG
CGCGTAGCCTAAGCATTCGCGTTGTGGTTGATGGTGCTTAAGAGATGATG
ATGGCCGCGCCGAAGCTCACGCCTGAGGTCAACGCCAAAGCACTGTCAAG
GCTTGGAATCTCAAGTTTGCAGCGACTCTCGTGCCGGGCCGTCAAGGCCA
ATAATTTTCGCGAGTTTATCTTCCCGCCAGAGTTTTTTTTTTAAATATTT
TCTGCCGCCAAAAGCGCGAGAGCGTGAGCATGCGAAATCAGAGGAATCGG
CGAGAGCCGCGGGGGGGGGTGGCGAACCCAATGTGAGATTGTATAATGTA
AGGCAAGAACGGGGGATAAATGGAATGATCCCACGTGACCACAGGCAACA
TTCACACATGGCCGGTCAGTCAGTCGTACGTGAGCCGCAAACACACACAC
CAACACCTACTTGTCCCCTCCCCCCCACATCTGTTGTGTTGTCCTCTCTA
CAACGCCTGCATCTCATTGTACACCAAAAAGGTCTTCCTGAAGAACGACA
CTCCGAGACCCTTGCGCGTCTCGCTCAGCCGCGAGCGCGATCACGAGCCA
AACACCATGATACCCGTGGACGGGGAGGTGTGCTTACCTTTCCCCCTGCT
CAGCGAA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10423:3499..6955+ >mRNA_S-dermatodea_contig10423.308.1 ID=mRNA_S-dermatodea_contig10423.308.1|Name=mRNA_S-dermatodea_contig10423.308.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at S-dermatodea_contig10423:3499..6955+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCATCAATATGAGCGACCCACGCGGCGCAGCAACGCTCAGCGGGGA
GATGACGGCGAAGAGTCACTTCGTCTTGAACGCAACCACTGGCCTCACGT
CGCTAGCTTGCACCATCTTTGACACACAGGACTACGCAAATACAAGATGC
GCATCAATATGAGCGACCCACGCGGCGCAGCAACGCTCAGCGGGGAGATG
ACGGCGAAGAGTCACTTCGTCTTGAACGCAACCACTGGCCTCACGTCGCT
AGCTTGCACCATCTTTGACACACAGGACTACGCAAATACAAGGTATTCCA
CGACGTCCGTGTACACGGAATTGCGGTATGGGACCGGAGAGGACGACGAT
GGTTCCCGCCTCCTTACGATCGAGAACCACCTGGGCGTACCGGTGACCGT
GTCGTTGGAGCGCACCGACGATGCCGGAGAGGACGCTTTGGACACGTCGT
CTTCGCGAGGGCTGCATTTCGGCAGAAAGTCCAAGTATTCCACGACGTCC
GTGTACACGGAATTGCGGTATGGGACCGGAGAGGACGACGATGGTTCCCG
CCTCCTTACGATCGAGAACCACCTGGGCGTACCGGTGACCGTGTCGTTGG
AGCGCACCGACGATGCCGGAGAGGACGCTTTGGACACGTCGTCTTCGCGA
GGGCTGCATTTCGGCAGAAAGTCCAAAAACTCTCCCCCGCAGTCGTCGGG
GAAGACCATCAGCACAAGCACCAAACTTGCCGCTTCGCTGTACGCGAAAA
AGGGCAAGGCTGAGGCCAACCCGCAGGAGACGAGAGCTGGCATGGCTGGC
ACACCGGCTGACCGCATCAGCCTCGGGGAGCTGCTGGTTCCCGACGCGAA
GAAGTCACTCCAGACAGCCACGGTGACAGTGGCAGTGAAGGGTTTCCAGC
CGTTGTCAGGCGTTCCTCTCGACCTGCTCGGCCGTGGGACGCACGTCTTC
AAGATGACCAGGAAACTCTCCCCCGCAGTCGTCGGGGAAGACCATCAGCA
CAAGCACCAAACTTGCCGCTTCGCTGTACGCGAAAAAGGGCAAGGCTGAG
GCCAACCCGCAGGAGACGAGAGCTGGCATGGCTGGCACACCGGCTGACCG
CATCAGCCTCGGGGAGCTGCTGGTTCCCGACGCGAAGAAGTCACTCCAGA
CAGCCACGGTGACAGTGGCAGTGAAGGGTTTCCAGCCGTTGTCAGGCGTT
CCTCTCGACCTGCTCGGCCGTGGGACGCACGTCTTCAAGATGACCAGGTA
CGAGGCCCAGTCTCCGAGCATGCACAAGAAGCGGTGGCGGTTCGAAGGGC
TTGTGGTGAAGTTCGTGGCGCGCCCGGCACGAGATCCTGCCGTCCTCGAC
CTGGCCATGCAGCTACAGACGAACTACGAGGCCCAGTCTCCGAGCATGCA
CAAGAAGCGGTGGCGGTTCGAAGGGCTTGTGGTGAAGTTCGTGGCGCGCC
CGGCACGAGATCCTGCCGTCCTCGACCTGGCCATGCAGCTACAGACGAAC
GTCTTCCTGAAGAACGACACTCCGAGACCCTTGCGCGTCTCGCTCAGCCG
CGAGCGCGATCACGAGCCAAACACCATGATACCCGTGGACGGGGAGGTGT
GCTTACCTTTCCCCCTGCTCAGCGAAGTCTTCCTGAAGAACGACACTCCG
AGACCCTTGCGCGTCTCGCTCAGCCGCGAGCGCGATCACGAGCCAAACAC
CATGATACCCGTGGACGGGGAGGTGTGCTTACCTTTCCCCCTGCTCAGCG
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