mRNA_S-dermatodea_contig10382.277.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10382.277.1
Unique NamemRNA_S-dermatodea_contig10382.277.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: D7FWM8_ECTSI (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.200e-31
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHKP 180
            KVDGLPNDYEGT KTREWLVTLN+MRAA+ELSEDQARQLLHDLDTSYSAFFRYLEMT KP
Sbjct:  174 KVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 233          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A7S1UKK1_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKK1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.030e-16
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLE 165
            +V GLP D+EGT K + WL TLN MRA +ELSEDQ+RQL HDL++SYSAF R+L+
Sbjct:  145 RVPGLPADFEGTTKLQGWLATLNGMRAVDELSEDQSRQLEHDLESSYSAFHRFLK 199          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A836CDG2_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.950e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYL 162
            K +GLP  +EG    R WL+T N +RA+++L ++Q RQLLHDLD SYSAFFR+L
Sbjct:  186 KCEGLPEGFEGVKTMRAWLITFNGLRASDQLDDEQVRQLLHDLDVSYSAFFRFL 239          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A6S9EJI3_HETAK (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EJI3_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-13
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLE 165
            ++  LP D+  T K   WL  LN +RAA+EL EDQARQLLHDLD +YS FFR+LE
Sbjct:  182 RLAALPADFAPTQKIEAWLKELNGLRAADELGEDQARQLLHDLDAAYSGFFRFLE 236          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A482RPG3_9ARCH (VPS28 C-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPG3_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 4.890e-13
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEM 168
            K+  LP D+EG+ KT+ WL  LNS+RA +ELSE+  RQLL DL+T+YSAF + L M
Sbjct:   42 KLHFLPADFEGSVKTKGWLAKLNSLRAVDELSEEDIRQLLFDLETNYSAFHKLLGM 97          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A068RQ46_9FUNG (Vacuolar protein sorting-associated protein 28 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RQ46_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 9.580e-13
Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    4 VDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHK 177
            V GLP D+EG +K R+WL+TLNSM+A++E++E+QARQ+L +++ S++ F+R L    K
Sbjct:  180 VPGLPGDFEGRSKVRQWLITLNSMKASDEITEEQARQMLFEMEQSHTEFYRLLSGDQK 237          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A1C7N828_9FUNG (Vacuolar protein sorting-associated protein 28 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N828_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 1.210e-12
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHK 177
            KV GL  D+EG  K R+WL+TL+SM+A++E++E+QARQ+L ++D S+S F R L   HK
Sbjct:  174 KVPGLTPDFEGKQKVRQWLITLHSMKASDEITEEQARQMLFEMDQSHSEFHRLLSGEHK 232          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A1X2HJJ5_SYNRA (Vacuolar protein sorting-associated protein 28 n=2 Tax=Mucorales TaxID=4827 RepID=A0A1X2HJJ5_SYNRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.420e-12
Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    4 VDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHK 177
            V GLP D+EG AK R+WL+TL+SM+A+++++E+QARQ+L ++D S++ F+R L    K
Sbjct:  136 VPGLPADFEGKAKVRQWLITLHSMKASDQITEEQARQMLFEMDQSHTEFYRLLSGEQK 193          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A812XGV8_SYMMI (Vps28 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XGV8_SYMMI)

HSP 1 Score: 68.9 bits (167), Expect = 1.760e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYL 162
            +V GLP D+EG  K R WL  LN MRA EELS+++ARQL+ DL+ +YSAF RYL
Sbjct:  207 RVAGLPADFEGLVKMRLWLQKLNQMRAVEELSDEEARQLIFDLEGAYSAFHRYL 260          
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: UPI00083C35C9 (vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C35C9)

HSP 1 Score: 66.6 bits (161), Expect = 6.930e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   13 LPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMT 171
            LP+D+EG  K  +WL TLNSM+A++ELSE Q RQLL DL++SYSAF + L  T
Sbjct:  161 LPSDFEGKQKVTDWLATLNSMQASDELSEAQVRQLLFDLESSYSAFNKVLHNT 213          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM8_ECTSI3.200e-3193.33Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7S1UKK1_9STRA3.030e-1665.45Vacuolar protein sorting-associated protein 28 hom... [more]
A0A836CDG2_9STRA4.950e-1457.41Vacuolar protein sorting-associated protein 28 hom... [more]
A0A6S9EJI3_HETAK3.550e-1360.00Vacuolar protein sorting-associated protein 28 hom... [more]
A0A482RPG3_9ARCH4.890e-1357.14VPS28 C-terminal domain-containing protein n=1 Tax... [more]
A0A068RQ46_9FUNG9.580e-1350.00Vacuolar protein sorting-associated protein 28 n=2... [more]
A0A1C7N828_9FUNG1.210e-1252.54Vacuolar protein sorting-associated protein 28 n=1... [more]
A0A1X2HJJ5_SYNRA1.420e-1250.00Vacuolar protein sorting-associated protein 28 n=2... [more]
A0A812XGV8_SYMMI1.760e-1261.11Vps28 protein n=1 Tax=Symbiodinium microadriaticum... [more]
UPI00083C35C96.930e-1260.38vacuolar protein sorting-associated protein 28 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10382contigS-dermatodea_contig10382:135..317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue5.9e-25
Seed eggNOG ortholog2880.D7FWM8
Preferred nameVPS28
KEGG koko:K06002,ko:K12184
KEGG Pathwayko04144,ko04974,map04144,map04974
KEGG ModuleM00409
GOsGO:0000003,GO:0000813,GO:0001654,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006914,GO:0006996,GO:0007010,GO:0007032,GO:0007034,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008593,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010604,GO:0010605,GO:0010646,GO:0010648,GO:0010796,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0019058,GO:0019068,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030163,GO:0030182,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032535,GO:0032801,GO:0032879,GO:0032880,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040008,GO:0042058,GO:0042059,GO:0042176,GO:0042221,GO:0042493,GO:0042551,GO:0042886,GO:0043112,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045324,GO:0045732,GO:0045807,GO:0045926,GO:0046618,GO:0046755,GO:0046907,GO:0048232,GO:0048468,GO:0048469,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051036,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0060255,GO:0060341,GO:0060627,GO:0061919,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070925,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090066,GO:0090087,GO:0090150,GO:0097352,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1903320,GO:1903321,GO:1903827,GO:1903829,GO:1904669,GO:1904951,GO:2000395,GO:2000397
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG3284@1,KOG3284@2759
EC3.4.23.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated, VPS28
Ec32 orthologEc-06_001250.1
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924154.3120153-CDS-S-dermatodea_contig10382:134..3171622924154.3120153-CDS-S-dermatodea_contig10382:134..317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10382 135..317 +
1694079054.762736-CDS-S-dermatodea_contig10382:134..3171694079054.762736-CDS-S-dermatodea_contig10382:134..317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10382 135..317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10382.277.1prot_S-dermatodea_contig10382.277.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10382 135..317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10382.277.1

>prot_S-dermatodea_contig10382.277.1 ID=prot_S-dermatodea_contig10382.277.1|Name=mRNA_S-dermatodea_contig10382.277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAF
FRYLEMTHKP*
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mRNA from alignment at S-dermatodea_contig10382:135..317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10382.277.1 ID=mRNA_S-dermatodea_contig10382.277.1|Name=mRNA_S-dermatodea_contig10382.277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at S-dermatodea_contig10382:135..317+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGGACGGGTTGCCGAACGACTACGAAGGGACCGCCAAAACGCGAGA GTGGCTCGTTACCTTAAACTCGATGCGCGCCGCCGAAGAGCTATCGGAGG ACCAAGCGAGACAGCTGTTGCACGACCTCGACACGTCATACAGCGCCTTC TTCCGATACCTGGAGATGACGCACAAACCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10382:135..317+

>mRNA_S-dermatodea_contig10382.277.1 ID=mRNA_S-dermatodea_contig10382.277.1|Name=mRNA_S-dermatodea_contig10382.277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig10382:135..317+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGGACGGGTTGCCGAACGACTACGAAGGGACCGCCAAAACGCGAGA
GTGGCTCGTTACCTTAAACTCGATGCGCGCCGCCGAAGAGCTATCGGAGG
ACCAAGCGAGACAGCTGTTGCACGACCTCGACACGTCATACAGCGCCTTC
TTCCGATACCTGGAGATGACGCACAAACCGTGAAAGGTGGACGGGTTGCC
GAACGACTACGAAGGGACCGCCAAAACGCGAGAGTGGCTCGTTACCTTAA
ACTCGATGCGCGCCGCCGAAGAGCTATCGGAGGACCAAGCGAGACAGCTG
TTGCACGACCTCGACACGTCATACAGCGCCTTCTTCCGATACCTGGAGAT
GACGCACAAACCGTGA
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