mRNA_S-dermatodea_contig10382.277.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: D7FWM8_ECTSI (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM8_ECTSI) HSP 1 Score: 117 bits (292), Expect = 3.200e-31 Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHKP 180
KVDGLPNDYEGT KTREWLVTLN+MRAA+ELSEDQARQLLHDLDTSYSAFFRYLEMT KP
Sbjct: 174 KVDGLPNDYEGTQKTREWLVTLNAMRAADELSEDQARQLLHDLDTSYSAFFRYLEMTQKP 233
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A7S1UKK1_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKK1_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.030e-16 Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLE 165
+V GLP D+EGT K + WL TLN MRA +ELSEDQ+RQL HDL++SYSAF R+L+
Sbjct: 145 RVPGLPADFEGTTKLQGWLATLNGMRAVDELSEDQSRQLEHDLESSYSAFHRFLK 199
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A836CDG2_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG2_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.950e-14 Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYL 162
K +GLP +EG R WL+T N +RA+++L ++Q RQLLHDLD SYSAFFR+L
Sbjct: 186 KCEGLPEGFEGVKTMRAWLITFNGLRASDQLDDEQVRQLLHDLDVSYSAFFRFL 239
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A6S9EJI3_HETAK (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EJI3_HETAK) HSP 1 Score: 70.5 bits (171), Expect = 3.550e-13 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLE 165
++ LP D+ T K WL LN +RAA+EL EDQARQLLHDLD +YS FFR+LE
Sbjct: 182 RLAALPADFAPTQKIEAWLKELNGLRAADELGEDQARQLLHDLDAAYSGFFRFLE 236
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A482RPG3_9ARCH (VPS28 C-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPG3_9ARCH) HSP 1 Score: 67.0 bits (162), Expect = 4.890e-13 Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEM 168
K+ LP D+EG+ KT+ WL LNS+RA +ELSE+ RQLL DL+T+YSAF + L M
Sbjct: 42 KLHFLPADFEGSVKTKGWLAKLNSLRAVDELSEEDIRQLLFDLETNYSAFHKLLGM 97
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A068RQ46_9FUNG (Vacuolar protein sorting-associated protein 28 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RQ46_9FUNG) HSP 1 Score: 69.3 bits (168), Expect = 9.580e-13 Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 4 VDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHK 177
V GLP D+EG +K R+WL+TLNSM+A++E++E+QARQ+L +++ S++ F+R L K
Sbjct: 180 VPGLPGDFEGRSKVRQWLITLNSMKASDEITEEQARQMLFEMEQSHTEFYRLLSGDQK 237
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A1C7N828_9FUNG (Vacuolar protein sorting-associated protein 28 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N828_9FUNG) HSP 1 Score: 68.9 bits (167), Expect = 1.210e-12 Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHK 177
KV GL D+EG K R+WL+TL+SM+A++E++E+QARQ+L ++D S+S F R L HK
Sbjct: 174 KVPGLTPDFEGKQKVRQWLITLHSMKASDEITEEQARQMLFEMDQSHSEFHRLLSGEHK 232
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A1X2HJJ5_SYNRA (Vacuolar protein sorting-associated protein 28 n=2 Tax=Mucorales TaxID=4827 RepID=A0A1X2HJJ5_SYNRA) HSP 1 Score: 68.2 bits (165), Expect = 1.420e-12 Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 4 VDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMTHK 177
V GLP D+EG AK R+WL+TL+SM+A+++++E+QARQ+L ++D S++ F+R L K
Sbjct: 136 VPGLPADFEGKAKVRQWLITLHSMKASDQITEEQARQMLFEMDQSHTEFYRLLSGEQK 193
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: A0A812XGV8_SYMMI (Vps28 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XGV8_SYMMI) HSP 1 Score: 68.9 bits (167), Expect = 1.760e-12 Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYL 162
+V GLP D+EG K R WL LN MRA EELS+++ARQL+ DL+ +YSAF RYL
Sbjct: 207 RVAGLPADFEGLVKMRLWLQKLNQMRAVEELSDEEARQLIFDLEGAYSAFHRYL 260
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Match: UPI00083C35C9 (vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C35C9) HSP 1 Score: 66.6 bits (161), Expect = 6.930e-12 Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 13 LPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFFRYLEMT 171
LP+D+EG K +WL TLNSM+A++ELSE Q RQLL DL++SYSAF + L T
Sbjct: 161 LPSDFEGKQKVTDWLATLNSMQASDELSEAQVRQLLFDLESSYSAFNKVLHNT 213 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10382.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10382.277.1 >prot_S-dermatodea_contig10382.277.1 ID=prot_S-dermatodea_contig10382.277.1|Name=mRNA_S-dermatodea_contig10382.277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp KVDGLPNDYEGTAKTREWLVTLNSMRAAEELSEDQARQLLHDLDTSYSAFback to top mRNA from alignment at S-dermatodea_contig10382:135..317+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10382.277.1 ID=mRNA_S-dermatodea_contig10382.277.1|Name=mRNA_S-dermatodea_contig10382.277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at S-dermatodea_contig10382:135..317+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10382:135..317+ >mRNA_S-dermatodea_contig10382.277.1 ID=mRNA_S-dermatodea_contig10382.277.1|Name=mRNA_S-dermatodea_contig10382.277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig10382:135..317+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |