mRNA_S-dermatodea_contig10362.269.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10362.269.1
Unique NamemRNA_S-dermatodea_contig10362.269.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10362.269.1 vs. uniprot
Match: D7FPQ2_ECTSI (Trigger_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.920e-36
Identity = 71/154 (46.10%), Postives = 102/154 (66.23%), Query Frame = 2 
Query:   17 MQTQELEQVVDFISAKRLGVVHEGQGIFSFQFKIEAPGSTTERLNDRITRAYKERFTFPGFEEGEIPPQFVGELNQYVLEEVMNDTILTALDAHGLVGVAAADGGASEVEILEDIKDLLEAFKPGKPLAFSCTINARARFVVGQGSGAADSAAV 478
            M+ +ELEQ+   I  K+L +V E +G++ ++F IEAPG  T+ L+ RI R  K +  FPG+ +GEIPP+ + E  +YV+EEVMN+ + TAL  + LVG   A G  SE +I  DI+D+L+ FKPGKPL+FSCT +A+ +     G    D+AAV
Sbjct:   47 MEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVG---AKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAV 197
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BLAST of mRNA_S-dermatodea_contig10362.269.1 vs. uniprot
Match: A0A835YVH3_9STRA (Trigger_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.630e-20
Identity = 46/134 (34.33%), Postives = 83/134 (61.94%), Query Frame = 2 
Query:   26 QELEQVVDFISAKRLGVVHEGQGIFSFQFKIEAPGSTTERLNDRITRAYKERFTFPGFEEGEIPPQFVGELNQYVLEEVMNDTILTALDAHGLVGVAAADGGASEVEILEDIKDLLEAFKPGKPLAFSCTINAR 427
            + L   +D + A RL  V E  GI+ ++F+IE  G  T+ + + I +  +++  FPGF +G+IPP    ++  + +EE +N+++++AL AHGL  +   +G A   E+ + ++DL+ AFKPGK L+ +  +NA+
Sbjct:   48 EPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNA---ELTQQVEDLVAAFKPGKTLSINAKVNAK 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10362.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ2_ECTSI1.920e-3646.10Trigger_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YVH3_9STRA2.630e-2034.33Trigger_N domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10362contigS-dermatodea_contig10362:2132..6627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue2.5e-30
Seed eggNOG ortholog2880.D7FPQ2
EggNOG free text desc.Bacterial trigger factor protein (TF)
EggNOG OGs2E9TB@1,2SG42@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size943
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.5979142-UTR-S-dermatodea_contig10362:2131..25751622924153.5979142-UTR-S-dermatodea_contig10362:2131..2575Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10362 2132..2575 -
1694079054.2640922-UTR-S-dermatodea_contig10362:2131..25751694079054.2640922-UTR-S-dermatodea_contig10362:2131..2575Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10362 2132..2575 -
1622924153.6789763-UTR-S-dermatodea_contig10362:6611..66271622924153.6789763-UTR-S-dermatodea_contig10362:6611..6627Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10362 6612..6627 -
1694079054.3201218-UTR-S-dermatodea_contig10362:6611..66271694079054.3201218-UTR-S-dermatodea_contig10362:6611..6627Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10362 6612..6627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.6073096-CDS-S-dermatodea_contig10362:2575..26981622924153.6073096-CDS-S-dermatodea_contig10362:2575..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 2576..2698 -
1694079054.2782497-CDS-S-dermatodea_contig10362:2575..26981694079054.2782497-CDS-S-dermatodea_contig10362:2575..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 2576..2698 -
1622924153.621051-CDS-S-dermatodea_contig10362:3489..36211622924153.621051-CDS-S-dermatodea_contig10362:3489..3621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 3490..3621 -
1694079054.287015-CDS-S-dermatodea_contig10362:3489..36211694079054.287015-CDS-S-dermatodea_contig10362:3489..3621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 3490..3621 -
1622924153.6336236-CDS-S-dermatodea_contig10362:4074..41071622924153.6336236-CDS-S-dermatodea_contig10362:4074..4107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 4075..4107 -
1694079054.2957-CDS-S-dermatodea_contig10362:4074..41071694079054.2957-CDS-S-dermatodea_contig10362:4074..4107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 4075..4107 -
1622924153.65002-CDS-S-dermatodea_contig10362:5079..52051622924153.65002-CDS-S-dermatodea_contig10362:5079..5205Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 5080..5205 -
1694079054.3045673-CDS-S-dermatodea_contig10362:5079..52051694079054.3045673-CDS-S-dermatodea_contig10362:5079..5205Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 5080..5205 -
1622924153.6645193-CDS-S-dermatodea_contig10362:6542..66111622924153.6645193-CDS-S-dermatodea_contig10362:6542..6611Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 6543..6611 -
1694079054.3124185-CDS-S-dermatodea_contig10362:6542..66111694079054.3124185-CDS-S-dermatodea_contig10362:6542..6611Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10362 6543..6611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10362.269.1prot_S-dermatodea_contig10362.269.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10362 2576..6611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10362.269.1

>prot_S-dermatodea_contig10362.269.1 ID=prot_S-dermatodea_contig10362.269.1|Name=mRNA_S-dermatodea_contig10362.269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
MQTQELEQVVDFISAKRLGVVHEGQGIFSFQFKIEAPGSTTERLNDRITR
AYKERFTFPGFEEGEIPPQFVGELNQYVLEEVMNDTILTALDAHGLVGVA
AADGGASEVEILEDIKDLLEAFKPGKPLAFSCTINARARFVVGQGSGAAD
SAAVADGGRD*
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mRNA from alignment at S-dermatodea_contig10362:2132..6627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10362.269.1 ID=mRNA_S-dermatodea_contig10362.269.1|Name=mRNA_S-dermatodea_contig10362.269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4496bp|location=Sequence derived from alignment at S-dermatodea_contig10362:2132..6627- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGAGGCGATGGTGCATGCAGACGCAGGAGCTGGAGCAGGTGGTTGATT
TCATTAGCGCCAAACGGCTGGGAGTCGTCCATGAGGTAAGCCACGTAGTT
CCTCCACATACTGGAGTTCGATTTTCGACGACAGCCTCTGCGCCGGTGTT
ACCATACATGTACCGTTCCTGCGTATTTGCCGGAAAAACGATAACGTCTG
TATTGCTGTAGGCTACAAGTACAGGCTTCGTATCGTATTCATCTCTGGAA
GATTTGCGTTGTGGCATGAGTTCGGCGACGAATTGCTCATGCGTCCCACT
ACTGGCAGTCTCTACATTCCTTTCTCAAAAGCGCCGTGCGTACCTTATTT
GTGTGGGACAATCCGGTGTGTGATGGGAGCCTCTTCTCGAGCCAAAGCCA
ACGGTGGTGCGTTGGCCGGCGCTTTTAGCGCTTCCATCCAAAGTGGAAAA
TTTTTCGCCACCCGCCGTGATGGCTTCCGTCAAACCTAGCCGCTCCAATA
TCAAACGTGTGCTTTGTCAAGCCCGTGCCCCCTTAATTTCCATCGTGAAA
AAATCTCGCTGTCGCTCGCCGGAACGATTAACGTAGCGTGACAGCGCCGC
GGCGTGGGTTATGCTCGGTAGGGATTTCTGCGCCGAATAGAAGCTTGATT
CGCTTGCAAAACACGAAAGGCTTGCTCTCCCTAGTGGCAGCACCGCGAAT
CACCGACGATTCCCGGCTCTCTCAATAGACCTCTATGTCTACATCTCTTT
GAAGAAAACGGAAACTTCACATATGTGGCAACTGCTGTCGCATCAATCAA
TAGTTGGCAAGCGTAAGGCTCGTCGATGTACAAATCAAGGCAGTGGGGTA
GTCGACCCCGCTCACACAGGACGTACTTGTATATGTGTGGCGCAGTCTCA
TGTCTCGGGCAACGTGGTATCTACTACGGAGTATACAATGCATTCCGATA
GGACGTACCAGGTACAGCTCAGCAGAGGCTGCAGTCTTCCTTAATCCTCT
CGGATGTGACCCTGGCCACTTGAATATGCAATGGTTGCCGCCCAATTGTT
CTAGTCGAGCGGCTGACAAAACTTGTTGTACGACCACAGGACAAGCGCCC
TATTCGGGGCCACGGGGTACCTCTCAGCGTCCACCGTTAAACAGCCACGA
CCAAAAACAAATGCAAAATGCTGTACACGTATTTCTGTGTGCTGTTGTTC
CGACGCATGCGTGTGTACCTATGAACATCGCCACCAAAAATAATCCTGCT
GAGCCGATGCCCATTCAGCCACTGTTGCGTTGTCTAAAAAACCCCCAACT
CAACTCGGAGGTGCCTCTGCTACGGTCGCTTGGGTCACCTTCTCCTCCCT
ATACGAAGTATATATGATACCGGTATGCTGCAAGGGTGACGACATAATGT
GTTCGTCGCGTGTGCGCAATAGGGACAGGGGATTTTCAGCTTCCAGTTCA
AGATCGAAGCGCCGGGAAGCACGACGGAAAGATTAAATGACCGCATAACT
CGAGCCTACAAAGAGAGGTTTACGTTCCCTGGGTTCGAGGAGGGCGAGGT
GATCACGTCGGTTGGTTCGTTGCTTTATTGATTATATTGGTTCATTGATT
TTATTGATTTGGTAGATTGATTTGCACGCGAACAGGCGATCGGCTTAACC
CAACCCGACTTGTGATGAGATGCGCAAACGAGTCAAGGAGAATATAACTC
ATCAATACTTCCGGTTTCCCCTGGAACTAGTGTGCCCGTGAGTTAGGGAT
GTACATGTGAACTAGATTTTTGCTTTTGTGAAACCCCTTTTTTTCTACAA
TACAGAATCCCGCCCCCGGTACTTACTATAGCACAAGAAAGAACAAATAG
TTCATGCGGACACATGAGCGGCAAGCCATCCGGGGCAAGGCTGTTTTGTC
ATCGGAGAAGCTGTCTTCGTTCGATAGCGCATTGCCCTTGGTTGCATGTG
GTATTTGGGGAATGATGGCACTGTCGAGATGTGGGCCATTATGATGAGAG
AGAACACAGCCCCGGGGCCATGAAACGACTATACAACGTGCTATTCAGTG
CCGTGCGGTGCCGACTTGGCCACGTGCTTTCATAATTCGGGATCAACCTC
AGGTCGTATTTCGAAGTATTCGGATAAAGAAGCAGAGTTTGCATTGCAAA
ACGCATGTACAGAGCCCGAGGAAAGACCGAACTCTCCGAGTTTGACGATC
CATGTCTCGCCGGCGTCAGACGATGACTTCCGTGTCGAATTTGTCGGGCA
CAGGCTGCCATAACCACCTTGGCCGACGTAGAACCCCCTCTGCTGTGCTC
CAAATATAGCATTGTCATGTGTATGGGATTTATGTACTCTCTTATATTTT
TTTTAGTATCGAGCAACGAGCGGTACAGATCGGCGGCGTAAATTGCGGAG
AGGTCTCTGATCTATACACCACAGGCCACACCAAGTTAGATGCGTTGCAC
ATGTGCTTTTTACGACGGATTCTCGTGCCCCCTGCCCTGCGTTACCTTCG
TCGATTTGTTTCGTTCGCAGATCCCGCCGCAGTTCGTGGGAGAACTGAAC
CAGGTAAGCTTGCGTCTTTGCGTTACCACTGCATCGTCGACCCCACCAAT
GCGACGAGTCAGCTGCGAATTTCGCGTGGAACGCGCGCGATCTGTTGGGG
GACCAGGGCGAGAGGCAGCGGGGCGAACTCATGACGCCCGCGCACAGTCC
ACCGACACCAATTTCGCACTTCTCGTTGCGTAATTATCTTGGTGTAGTCC
ACCGACGTACAGCACCTGCTGGTCGGTTATCTTGGTTGCTTGTAGGCCGA
CTCTCATCTGTCCGGCGGCTGTATCTTCTCTGGCTTGCGTCCCCTCGCGG
TCCAATTCAATACGGCTCGCCTATGTAGTCGTGGCATGTTGTAGGAAGGT
TGGGATGCCGAGGTCATGGCTGCCAAAATGCTCTGACAACCGCTCCCATC
GACTCAGCTCTAGGTGCTTAACTCTACCATGTTTTCTGTTGTTTTCGCCA
ACCCAGTACGTGTTGGAAGAAGTTATGAACGACACCATCTTGACGGCTCT
CGACGCTCACGGCCTGGTGGGTGTCGCCGCCGCGGACGGAGGGGCATCCG
AGGTGGAAATTTTGGAAGACATCAAGGACTTGCTCGAGGTGAATGCCTAC
CGACGACACCTTCAACAGCGTGTATTCGAAACGGGGGGGTTCCGCGCTTG
TTTGTTGTCATGCTTGTGGAGCTGCTTGCAGCCACAAACACTGCTCTCGT
CGCATGTTGTCGGTCCTGGTGTTGGTTGTCAGTAATCCCGGAACACGTCC
ACCTTTGCCGAAATGGAGCCTTGTGGTACTCACTTTTGCGTCTGCTCAAT
TCGCAGGTGGTTGCAACACGCGCGGTGGTGTGAGAGTGAGTCAATGTGTA
CGAAGTATTGACATAAGAGTATATTTATTCATGTACAGCAGTAGGGGTAT
CATTCATTTTTATTCTCGTTTTCTTACAGAACAAACTATAAACGGCCGCG
TGCGGGTCGCTTGGAGAGAGCCGCAGGCACAGCGACGCCTTCACGGCCAA
GCGCTGGGCATGAGAGGAGACGCCTGTCTCTTTTCTCATTCCCCGGTGCC
GTCCGTTGCTCCTACAAAGTGCAAACGGGTCGCAAAATTGTGTTTTGTGG
CTTCCCGCCAATGCGACCACTTGTATTAGATGTATCATACCCGGATGCAG
TGAGTACAAGAAATCGTGTGCCTTCTCCTAGAAAAACCCAATCGTATTCA
TGGAATGATATACTGACGTCCAAAATCTTATTTTTAATGTAAAGGGGACA
ATCCCAGCGTGCGTATTGTACCATAATGAGAGTTGTCATGCGTGGAGGTA
GGAGTGATCACAAATGTAGTTATTTCACGAGTGCTATTCGCTAACTCCCT
GTGATGGTGCCTCTGTTCGTCGGATACAGGCGTTCAAGCCGGGAAAGCCA
CTGGCCTTTTCGTGCACGATTAACGCCAGAGCGAGGTTTGTTGTCGGACA
GGGCAGCGGGGCTGCGGATAGCGCAGCAGTGGCGGACGGTGGTAGAGATT
GATGACGCGCACATGAGATGTTGCGGTGTACCACACAGGCACGCTTGTAC
TATGCTGTACATAAAATAGAATACCGATAATATTTTAGGGATGATGTGCG
TGGGGCGGAGTTTAGAGCACACGTTGTCATTGGGCTAGATCTTATTTCAT
TGGTCTTGTTACCACTGTTAACATTTGAGATAATATATGTGTTAATGTAA
TACCATATCCATCACCATCGTAAGTCCTTGATTGTTTGGAGAAACTTGAA
GCAGTCGCAATATTAATAGTCGTTGCTGCTAGCCGAGGTCAGCCGACCAC
CGGAGGAGGAGACTACATTGAGGCGCACAATTGCGCACAACAGGGCTGCT
TTTCGCTGTGGTTAGGTCTTTGTGGACGCCAGCTGCAACGGCCGGCGGTG
AAATGCCAAGATGACGCTATCATGCTCTAAATGCTTTAAGACTAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10362:2132..6627-

>mRNA_S-dermatodea_contig10362.269.1 ID=mRNA_S-dermatodea_contig10362.269.1|Name=mRNA_S-dermatodea_contig10362.269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at S-dermatodea_contig10362:2132..6627- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGACGCAGGAGCTGGAGCAGGTGGTTGATTTCATTAGCGCCAAACG
GCTGGGAGTCGTCCATGAGATGCAGACGCAGGAGCTGGAGCAGGTGGTTG
ATTTCATTAGCGCCAAACGGCTGGGAGTCGTCCATGAGGGACAGGGGATT
TTCAGCTTCCAGTTCAAGATCGAAGCGCCGGGAAGCACGACGGAAAGATT
AAATGACCGCATAACTCGAGCCTACAAAGAGAGGTTTACGTTCCCTGGGT
TCGAGGAGGGCGAGGGACAGGGGATTTTCAGCTTCCAGTTCAAGATCGAA
GCGCCGGGAAGCACGACGGAAAGATTAAATGACCGCATAACTCGAGCCTA
CAAAGAGAGGTTTACGTTCCCTGGGTTCGAGGAGGGCGAGATCCCGCCGC
AGTTCGTGGGAGAACTGAACCAGATCCCGCCGCAGTTCGTGGGAGAACTG
AACCAGTACGTGTTGGAAGAAGTTATGAACGACACCATCTTGACGGCTCT
CGACGCTCACGGCCTGGTGGGTGTCGCCGCCGCGGACGGAGGGGCATCCG
AGGTGGAAATTTTGGAAGACATCAAGGACTTGCTCGAGTACGTGTTGGAA
GAAGTTATGAACGACACCATCTTGACGGCTCTCGACGCTCACGGCCTGGT
GGGTGTCGCCGCCGCGGACGGAGGGGCATCCGAGGTGGAAATTTTGGAAG
ACATCAAGGACTTGCTCGAGGCGTTCAAGCCGGGAAAGCCACTGGCCTTT
TCGTGCACGATTAACGCCAGAGCGAGGTTTGTTGTCGGACAGGGCAGCGG
GGCTGCGGATAGCGCAGCAGTGGCGGACGGTGGTAGAGATTGAGCGTTCA
AGCCGGGAAAGCCACTGGCCTTTTCGTGCACGATTAACGCCAGAGCGAGG
TTTGTTGTCGGACAGGGCAGCGGGGCTGCGGATAGCGCAGCAGTGGCGGA
CGGTGGTAGAGATTGA
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