mRNA_S-dermatodea_contig10304.233.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: D8LUC7_ECTSI (Alb3 homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI) HSP 1 Score: 100 bits (249), Expect = 7.110e-23 Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 34 AAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
AAAV EE +PI+ LT +TE +ITG+HD+L MGVPSAYGISII FTLFVK ITFPLTYQQL+STTKMQ++ PKV
Sbjct: 91 AAAVAEEAAXXXX---XGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKV 172
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A835YLS0_9STRA (Alb3-like protein, thylakoidal inner membrane insertase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.210e-16 Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 1 IADATMDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
+ADAT A+ AAA GG+F L TE +IT +HD L+G GV +YG +II FTLF+K +TFPLTYQQLASTTKMQ++ PKV
Sbjct: 76 LADATA-ATADAAADAAANNGGVFAG---------LVTATEAAITMLHDALKGAGVEQSYGYAIIGFTLFIKGVTFPLTYQQLASTTKMQTLQPKV 161
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7R9UFB5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFB5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.870e-13 Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 16 MDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
DA+ A+ V + +GG P+ L A T +ITG+HDLL+G+G+ + YG +II FTL +K +TFPL +QL ST KMQ+I PK+
Sbjct: 79 QDAADVASEVAKSDQGG--------GPLGPLIAGTSFAITGLHDLLKGLGLQNPYGYAIILFTLLIKAVTFPLNAKQLESTGKMQAINPKI 161
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: M1V7G8_CYAM1 (Chloroplast membrane protein ALBINO3 or ARTEMIS n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V7G8_CYAM1) HSP 1 Score: 67.4 bits (163), Expect = 4.980e-11 Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 115 LTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
L E ITG D L +GVP +YG +IIF T+ VK ITFPL Y+Q+ ST MQ++APKV
Sbjct: 196 LIETIITGTGDTLAALGVPGSYGFAIIFLTIIVKAITFPLNYKQMKSTMAMQALAPKV 253
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S0G1P8_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1P8_9RHOD) HSP 1 Score: 64.3 bits (155), Expect = 4.820e-10 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 22 ASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
A+ A AV E K GL+G L E SI GIH+ L G+GVP AYG SII FT+ +K +T PL +Q+ ST +MQ + P V
Sbjct: 19 AAPAVEAVAGEEKRGLWGN---------FVKLIESSIIGIHNGLSGVGVPYAYGFSIILFTIGIKVLTLPLNSKQMESTMRMQDMQPMV 98
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S1T8R1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T8R1_9RHOD) HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 109 TALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
T + E + +HD+L GVP +YG +II FT+ VK +T+PL +QQ++ST KMQ + PKV
Sbjct: 110 TKVIESLVISLHDVLAHSGVPYSYGFAIILFTVGVKALTYPLNFQQMSSTMKMQGLQPKV 169
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S2FBB2_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBB2_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 3.410e-8 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 115 LTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
L E SIT +++ ++ + +YGISII FTL VK +T+PLTYQQL ST KMQ++ P+V
Sbjct: 100 LMESSITLLNNGIKSVTGADSYGISIILFTLGVKGLTYPLTYQQLESTQKMQALQPRV 157
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S1DMA5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA5_HEMAN) HSP 1 Score: 57.4 bits (137), Expect = 1.580e-7 Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1
Query: 10 ATMDASGAAAAVVEEGK----GGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
A A AA V EE K GG+FG L + +H + + +P A+G +I+ FT+FVK IT+PL Y+Q+AST MQ + PK+
Sbjct: 128 AAATAKEAANTVTEEAKKEDDGGIFG---------LLVKGVSTCLVTLHSIFKAANLPGAWGWAIMTFTIFVKAITYPLNYKQMASTISMQKLQPKL 215
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S0XYI9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYI9_HEMAN) HSP 1 Score: 57.4 bits (137), Expect = 1.650e-7 Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1
Query: 10 ATMDASGAAAAVVEEGK----GGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
A A AA V EE K GG+FG L + +H + + +P A+G +I+ FT+FVK IT+PL Y+Q+AST MQ + PK+
Sbjct: 126 AAATAKEAANTVTEEAKKEDDGGIFG---------LLVKGVSTCLVTLHSIFKAANLPGAWGWAIMTFTIFVKAITYPLNYKQMASTISMQKLQPKL 213
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S2EB53_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB53_TRICV) HSP 1 Score: 57.0 bits (136), Expect = 2.220e-7 Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 10 ATMDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPS-AYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
AT+ + A AAV G FG FLT E + IH +L MG+ A+G+SI+ T+F+K +T+PLT QQL ST++MQ++ P++
Sbjct: 85 ATVGTAAAPAAVEAAQDNGWFG---------FLTGPIEGLLNIIHGVLVSMGMDKDAWGVSIVGMTVFIKILTYPLTKQQLESTSRMQALQPQI 169 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10304.233.1 >prot_S-dermatodea_contig10304.233.1 ID=prot_S-dermatodea_contig10304.233.1|Name=mRNA_S-dermatodea_contig10304.233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp MDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGback to top mRNA from alignment at S-dermatodea_contig10304:150..437- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10304.233.1 ID=mRNA_S-dermatodea_contig10304.233.1|Name=mRNA_S-dermatodea_contig10304.233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig10304:150..437- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10304:150..437- >mRNA_S-dermatodea_contig10304.233.1 ID=mRNA_S-dermatodea_contig10304.233.1|Name=mRNA_S-dermatodea_contig10304.233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig10304:150..437- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |