mRNA_S-dermatodea_contig10304.233.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10304.233.1
Unique NamemRNA_S-dermatodea_contig10304.233.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: D8LUC7_ECTSI (Alb3 homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.110e-23
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   34 AAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            AAAV EE            +PI+ LT +TE +ITG+HD+L  MGVPSAYGISII FTLFVK ITFPLTYQQL+STTKMQ++ PKV
Sbjct:   91 AAAVAEEAAXXXX---XGFHPIQLLTGVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKV 172          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A835YLS0_9STRA (Alb3-like protein, thylakoidal inner membrane insertase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.210e-16
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 IADATMDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            +ADAT  A+  AAA      GG+F           L   TE +IT +HD L+G GV  +YG +II FTLF+K +TFPLTYQQLASTTKMQ++ PKV
Sbjct:   76 LADATA-ATADAAADAAANNGGVFAG---------LVTATEAAITMLHDALKGAGVEQSYGYAIIGFTLFIKGVTFPLTYQQLASTTKMQTLQPKV 161          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7R9UFB5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFB5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.870e-13
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   16 MDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
             DA+  A+ V +  +GG         P+  L A T  +ITG+HDLL+G+G+ + YG +II FTL +K +TFPL  +QL ST KMQ+I PK+
Sbjct:   79 QDAADVASEVAKSDQGG--------GPLGPLIAGTSFAITGLHDLLKGLGLQNPYGYAIILFTLLIKAVTFPLNAKQLESTGKMQAINPKI 161          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: M1V7G8_CYAM1 (Chloroplast membrane protein ALBINO3 or ARTEMIS n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V7G8_CYAM1)

HSP 1 Score: 67.4 bits (163), Expect = 4.980e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  115 LTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            L E  ITG  D L  +GVP +YG +IIF T+ VK ITFPL Y+Q+ ST  MQ++APKV
Sbjct:  196 LIETIITGTGDTLAALGVPGSYGFAIIFLTIIVKAITFPLNYKQMKSTMAMQALAPKV 253          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S0G1P8_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1P8_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 4.820e-10
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   22 ASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            A+ A  AV  E K GL+G             L E SI GIH+ L G+GVP AYG SII FT+ +K +T PL  +Q+ ST +MQ + P V
Sbjct:   19 AAPAVEAVAGEEKRGLWGN---------FVKLIESSIIGIHNGLSGVGVPYAYGFSIILFTIGIKVLTLPLNSKQMESTMRMQDMQPMV 98          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S1T8R1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T8R1_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  109 TALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            T + E  +  +HD+L   GVP +YG +II FT+ VK +T+PL +QQ++ST KMQ + PKV
Sbjct:  110 TKVIESLVISLHDVLAHSGVPYSYGFAIILFTVGVKALTYPLNFQQMSSTMKMQGLQPKV 169          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S2FBB2_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBB2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.410e-8
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  115 LTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            L E SIT +++ ++ +    +YGISII FTL VK +T+PLTYQQL ST KMQ++ P+V
Sbjct:  100 LMESSITLLNNGIKSVTGADSYGISIILFTLGVKGLTYPLTYQQLESTQKMQALQPRV 157          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S1DMA5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA5_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.580e-7
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   10 ATMDASGAAAAVVEEGK----GGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            A   A  AA  V EE K    GG+FG          L       +  +H + +   +P A+G +I+ FT+FVK IT+PL Y+Q+AST  MQ + PK+
Sbjct:  128 AAATAKEAANTVTEEAKKEDDGGIFG---------LLVKGVSTCLVTLHSIFKAANLPGAWGWAIMTFTIFVKAITYPLNYKQMASTISMQKLQPKL 215          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S0XYI9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYI9_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.650e-7
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   10 ATMDASGAAAAVVEEGK----GGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            A   A  AA  V EE K    GG+FG          L       +  +H + +   +P A+G +I+ FT+FVK IT+PL Y+Q+AST  MQ + PK+
Sbjct:  126 AAATAKEAANTVTEEAKKEDDGGIFG---------LLVKGVSTCLVTLHSIFKAANLPGAWGWAIMTFTIFVKAITYPLNYKQMASTISMQKLQPKL 213          
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Match: A0A7S2EB53_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB53_TRICV)

HSP 1 Score: 57.0 bits (136), Expect = 2.220e-7
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   10 ATMDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMGVPS-AYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV 288
            AT+  + A AAV      G FG         FLT   E  +  IH +L  MG+   A+G+SI+  T+F+K +T+PLT QQL ST++MQ++ P++
Sbjct:   85 ATVGTAAAPAAVEAAQDNGWFG---------FLTGPIEGLLNIIHGVLVSMGMDKDAWGVSIVGMTVFIKILTYPLTKQQLESTSRMQALQPQI 169          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10304.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LUC7_ECTSI7.110e-2364.71Alb3 homolog, thylakoidal inner membrane insertase... [more]
A0A835YLS0_9STRA4.210e-1652.08Alb3-like protein, thylakoidal inner membrane inse... [more]
A0A7R9UFB5_9STRA2.870e-1345.05Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
M1V7G8_CYAM14.980e-1156.90Chloroplast membrane protein ALBINO3 or ARTEMIS n=... [more]
A0A7S0G1P8_9RHOD4.820e-1044.94Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S1T8R1_9RHOD1.070e-948.33Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2FBB2_9STRA3.410e-853.45Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1DMA5_HEMAN1.580e-737.11Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XYI9_HEMAN1.650e-737.11Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2EB53_TRICV2.220e-739.36Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10304contigS-dermatodea_contig10304:150..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue5.5e-19
Seed eggNOG ortholog2880.D8LUC7
Preferred nameALB3.1
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019904,GO:0022607,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045036,GO:0045038,GO:0045184,GO:0046907,GO:0050789,GO:0050793,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051291,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0061024,GO:0065002,GO:0065003,GO:0065007,GO:0070206,GO:0070208,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072596,GO:0072598,GO:0072657,GO:0090150,GO:0090342
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlb3 homolog, thylakoidal inner membrane insertase
Ec32 orthologEc-14_004480.1
Exons1
Model size288
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.1293786-CDS-S-dermatodea_contig10304:149..4221622924151.1293786-CDS-S-dermatodea_contig10304:149..422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10304 150..422 -
1694079052.5434482-CDS-S-dermatodea_contig10304:149..4221694079052.5434482-CDS-S-dermatodea_contig10304:149..422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10304 150..422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.1393867-UTR-S-dermatodea_contig10304:422..4371622924151.1393867-UTR-S-dermatodea_contig10304:422..437Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10304 423..437 -
1694079052.5549881-UTR-S-dermatodea_contig10304:422..4371694079052.5549881-UTR-S-dermatodea_contig10304:422..437Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10304 423..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10304.233.1prot_S-dermatodea_contig10304.233.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10304 150..422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10304.233.1

>prot_S-dermatodea_contig10304.233.1 ID=prot_S-dermatodea_contig10304.233.1|Name=mRNA_S-dermatodea_contig10304.233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MDASGAAAAVVEEGKGGLFGTGLNINPIEFLTALTEKSITGIHDLLQGMG
VPSAYGISIIFFTLFVKTITFPLTYQQLASTTKMQSIAPKV
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mRNA from alignment at S-dermatodea_contig10304:150..437-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10304.233.1 ID=mRNA_S-dermatodea_contig10304.233.1|Name=mRNA_S-dermatodea_contig10304.233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig10304:150..437- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGCCGACGCGACGATGGACGCCTCGGGCGCGGCGGCAGCGGTAGTGGA GGAGGGCAAGGGCGGGCTGTTCGGCACCGGGCTCAACATCAACCCCATCG AGTTCCTCACCGCCCTCACCGAGAAATCCATCACGGGGATCCACGACCTG CTGCAGGGCATGGGGGTGCCCTCGGCCTACGGTATCTCGATCATATTCTT CACCTTGTTCGTCAAGACCATCACCTTTCCCCTCACCTACCAGCAGCTCG CTAGCACCACCAAGATGCAATCGATCGCACCCAAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10304:150..437-

>mRNA_S-dermatodea_contig10304.233.1 ID=mRNA_S-dermatodea_contig10304.233.1|Name=mRNA_S-dermatodea_contig10304.233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig10304:150..437- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCCTCGGGCGCGGCGGCAGCGGTAGTGGAGGAGGGCAAGGGCGG
GCTGTTCGGCACCGGGCTCAACATCAACCCCATCGAGTTCCTCACCGCCC
TCACCGAGAAATCCATCACGGGGATCCACGACCTGCTGCAGGGCATGGGG
GTGCCCTCGGCCTACGGTATCTCGATCATATTCTTCACCTTGTTCGTCAA
GACCATCACCTTTCCCCTCACCTACCAGCAGCTCGCTAGCACCACCAAGA
TGCAATCGATCGCACCCAAGGTAATGGACGCCTCGGGCGCGGCGGCAGCG
GTAGTGGAGGAGGGCAAGGGCGGGCTGTTCGGCACCGGGCTCAACATCAA
CCCCATCGAGTTCCTCACCGCCCTCACCGAGAAATCCATCACGGGGATCC
ACGACCTGCTGCAGGGCATGGGGGTGCCCTCGGCCTACGGTATCTCGATC
ATATTCTTCACCTTGTTCGTCAAGACCATCACCTTTCCCCTCACCTACCA
GCAGCTCGCTAGCACCACCAAGATGCAATCGATCGCACCCAAGGTA
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