mRNA_S-dermatodea_contig1029.217.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1029.217.1
Unique NamemRNA_S-dermatodea_contig1029.217.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1029.217.1 vs. uniprot
Match: A0A6H5J9L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.150e-9
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    4 ALLALSAISIKLSGVTPPSFASSHDSGSDVGIRDGAVALWGTFLWKGLALELLLQHFDGIGSALICMSIIAATMLMVFPIYHYVTPTAIALP 279
            ALLAL+A S K SG   PS      + S V      V  W  FL KGLAL+LL +HF+GIG AL CM ++A   ++ +P++  +T +  A+P
Sbjct:   44 ALLALAACSAKFSGAAAPSARFETSAASTV------VDDWTAFLTKGLALDLLARHFEGIGKALACMFVMALVAILAYPLHLLITRSPSAVP 129
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BLAST of mRNA_S-dermatodea_contig1029.217.1 vs. uniprot
Match: D7FQW2_ECTSI (Sterol or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.050e-8
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:    4 ALLALSAISIKLSGVTPPSFASSHDSGSDVGIRDGAVALWGTFLWKGLALELLLQHFDGIGSALICMSIIAATMLMVFPIYHYVTPTAIALPTVVGWVIAVWGAGKFQ 327
            ALLAL+A S K SG   PS      + S V      V  W  FL KGLAL+LL +HF+GIG AL CM ++A    + +P++  +T    A+P          GAGK Q
Sbjct:   44 ALLALAACSAKFSGAAAPSADFETPAASTV------VDEWTAFLTKGLALDLLARHFEGIGKALACMFVMALVATLAYPLHLLITRPPSAVPA--------GGAGKGQ 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1029.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9L7_9PHAE4.150e-942.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQW2_ECTSI1.050e-840.74Sterol or diacylglycerol O-acyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1029contigS-dermatodea_contig1029:2136..3006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.7439978-CDS-S-dermatodea_contig1029:2135..23381622924149.7439978-CDS-S-dermatodea_contig1029:2135..2338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1029 2136..2338 +
1694079051.5391943-CDS-S-dermatodea_contig1029:2135..23381694079051.5391943-CDS-S-dermatodea_contig1029:2135..2338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1029 2136..2338 +
1622924149.7528176-CDS-S-dermatodea_contig1029:2865..30041622924149.7528176-CDS-S-dermatodea_contig1029:2865..3004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1029 2866..3004 +
1694079051.5490131-CDS-S-dermatodea_contig1029:2865..30041694079051.5490131-CDS-S-dermatodea_contig1029:2865..3004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1029 2866..3004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1029.217.1prot_S-dermatodea_contig1029.217.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1029 2136..3004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1029.217.1

>prot_S-dermatodea_contig1029.217.1 ID=prot_S-dermatodea_contig1029.217.1|Name=mRNA_S-dermatodea_contig1029.217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
AALLALSAISIKLSGVTPPSFASSHDSGSDVGIRDGAVALWGTFLWKGLA
LELLLQHFDGIGSALICMSIIAATMLMVFPIYHYVTPTAIALPTVVGWVI
AVWGAGKFQWGVAS
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mRNA from alignment at S-dermatodea_contig1029:2136..3006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1029.217.1 ID=mRNA_S-dermatodea_contig1029.217.1|Name=mRNA_S-dermatodea_contig1029.217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=871bp|location=Sequence derived from alignment at S-dermatodea_contig1029:2136..3006+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGTTGCTGGCGCTTTCGGCTATTTCGATCAAGCTGTCGGGGGTAAC
TCCTCCCTCGTTTGCCAGCTCCCACGACTCCGGTAGTGACGTTGGTATTC
GCGATGGAGCGGTCGCGCTGTGGGGAACGTTTCTCTGGAAGGGCTTGGCG
CTTGAACTTCTTTTGCAACATTTTGACGGAATCGGGTCGGCTCTCATATG
CATGTAAGTCGCTGAACACTGCGTCTGTAGCACGGCGAGCTACTGCTGTG
CCGATATAGGGGGAACTGCAAATATCATGCTTCGCTCTGTACCGGCTGTG
TTATTGGGTGGCAGTAGTACGCCAAGGCAGCCCGTGTCGCGTATCCAGCA
TTGAGGAAAATGCCTTTCAGGCTTCGGAACGGGTCCACCGTCGCCCCTAT
TGCCGGAACTAAAATGTGGCGTTATTTCACGACCGCTGATCCCCGGTTGC
TCCCATCCCTAGATGATTGAAAACAAGCGACGATGTAACAAGTATGGGGT
GCTGCAGAGTAGAGTTGGGCATTTGTTTTCATGGCTTAAATAGCCCTTGG
AGATACTTCCTATTCCTCAGGTTGCATCTGCGAGCGTCTACTCTGACCAG
GGTGTGTACTGAGCTGGATAAGAAGCTCAAACGGCGGGTGCAGGTTTTAC
CTCACGGTGCCTTCGTAAATCAACGAGTACTTCTCTGTCGGCTGCCTTGC
TCCATCCCTGCTGTTGTTATCTCAAACAAGGTCGATCATAGCCGCTACAA
TGCTGATGGTGTTTCCAATCTACCATTACGTGACGCCCACGGCGATTGCT
CTACCAACGGTTGTCGGCTGGGTCATTGCCGTGTGGGGGGCGGGGAAATT
TCAATGGGGCGTGGCTTCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1029:2136..3006+

>mRNA_S-dermatodea_contig1029.217.1 ID=mRNA_S-dermatodea_contig1029.217.1|Name=mRNA_S-dermatodea_contig1029.217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig1029:2136..3006+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGTTGCTGGCGCTTTCGGCTATTTCGATCAAGCTGTCGGGGGTAAC
TCCTCCCTCGTTTGCCAGCTCCCACGACTCCGGTAGTGACGTTGGTATTC
GCGATGGAGCGGTCGCGCTGTGGGGAACGTTTCTCTGGAAGGGCTTGGCG
CTTGAACTTCTTTTGCAACATTTTGACGGAATCGGGTCGGCTCTCATATG
CATGCGGCGTTGCTGGCGCTTTCGGCTATTTCGATCAAGCTGTCGGGGGT
AACTCCTCCCTCGTTTGCCAGCTCCCACGACTCCGGTAGTGACGTTGGTA
TTCGCGATGGAGCGGTCGCGCTGTGGGGAACGTTTCTCTGGAAGGGCTTG
GCGCTTGAACTTCTTTTGCAACATTTTGACGGAATCGGGTCGGCTCTCAT
ATGCATGTCGATCATAGCCGCTACAATGCTGATGGTGTTTCCAATCTACC
ATTACGTGACGCCCACGGCGATTGCTCTACCAACGGTTGTCGGCTGGGTC
ATTGCCGTGTGGGGGGCGGGGAAATTTCAATGGGGCGTGGCTTCGGTCGA
TCATAGCCGCTACAATGCTGATGGTGTTTCCAATCTACCATTACGTGACG
CCCACGGCGATTGCTCTACCAACGGTTGTCGGCTGGGTCATTGCCGTGTG
GGGGGCGGGGAAATTTCAATGGGGCGTGGCTTCG
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