mRNA_S-dermatodea_contig1028.207.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1028.207.1
Unique NamemRNA_S-dermatodea_contig1028.207.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1028.207.1 vs. uniprot
Match: A0A6H5LM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM15_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.300e-21
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:  214 EGASRRLFVKLHSARTRRAAITNEHCRRSSILEMSALGRLGRTWGLYPWAPYLPRGPYHTPGAA-FQEYDW---------GPGVGGPITDGVDGSGLLQPGW 489
            EGASRRL+ KL +AR R+AA      RRSS+LEM+ALGRLGR WGLYPWAPYLPRGP+HT GA    EY           GPG+  P+      S   + GW
Sbjct:  364 EGASRRLYAKLSAARARQAAXXXXRLRRSSVLEMAALGRLGRAWGLYPWAPYLPRGPFHTHGAPPSPEYGLLDSLGGDGTGPGLALPLPPSPPSSSRWRSGW 465
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1028.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LM15_9PHAE8.300e-2153.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1028contigS-dermatodea_contig1028:19257..19788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002740.1
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.1510754-CDS-S-dermatodea_contig1028:19256..197871622924149.1510754-CDS-S-dermatodea_contig1028:19256..19787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1028 19257..19787 +
1694079051.186476-CDS-S-dermatodea_contig1028:19256..197871694079051.186476-CDS-S-dermatodea_contig1028:19256..19787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1028 19257..19787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1028.207.1prot_S-dermatodea_contig1028.207.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1028 19257..19787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1028.207.1

>prot_S-dermatodea_contig1028.207.1 ID=prot_S-dermatodea_contig1028.207.1|Name=mRNA_S-dermatodea_contig1028.207.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=177bp
ESGGGGGDAEISSSNEGDSSGIVSGDAVVAAVAGDGCGGGCESGGGGHQN
TGTTSSKSSSSNSSSRDRHREEGASRRLFVKLHSARTRRAAITNEHCRRS
SILEMSALGRLGRTWGLYPWAPYLPRGPYHTPGAAFQEYDWGPGVGGPIT
DGVDGSGLLQPGWGGGGGWGRSRTGSW
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mRNA from alignment at S-dermatodea_contig1028:19257..19788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1028.207.1 ID=mRNA_S-dermatodea_contig1028.207.1|Name=mRNA_S-dermatodea_contig1028.207.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at S-dermatodea_contig1028:19257..19788+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAAGCGGTGGCGGCGGCGGCGACGCTGAAATTTCAAGCAGCAATGAAGG
CGACTCCTCCGGTATAGTTAGCGGGGACGCTGTCGTGGCTGCCGTCGCCG
GTGATGGCTGCGGCGGCGGTTGTGAGAGTGGTGGCGGTGGACACCAAAAC
ACCGGTACCACGAGCAGCAAAAGCAGCAGCAGCAACAGCAGCAGCCGTGA
CCGCCACCGCGAGGAAGGAGCATCCCGTCGCCTCTTCGTCAAGCTCCACA
GCGCCCGGACGCGTAGGGCCGCGATCACCAACGAGCATTGCCGCCGTTCG
TCCATCCTCGAGATGAGCGCCCTCGGACGCCTCGGCCGTACCTGGGGGCT
GTACCCCTGGGCGCCCTACCTCCCTCGCGGGCCGTACCACACCCCTGGAG
CCGCTTTCCAGGAGTATGACTGGGGCCCCGGTGTTGGCGGCCCCATTACC
GACGGAGTCGACGGCTCGGGCCTTCTGCAGCCCGGGTGGGGCGGTGGTGG
AGGGTGGGGCCGAAGCCGGACGGGATCTTGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1028:19257..19788+

>mRNA_S-dermatodea_contig1028.207.1 ID=mRNA_S-dermatodea_contig1028.207.1|Name=mRNA_S-dermatodea_contig1028.207.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at S-dermatodea_contig1028:19257..19788+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAAGCGGTGGCGGCGGCGGCGACGCTGAAATTTCAAGCAGCAATGAAGG
CGACTCCTCCGGTATAGTTAGCGGGGACGCTGTCGTGGCTGCCGTCGCCG
GTGATGGCTGCGGCGGCGGTTGTGAGAGTGGTGGCGGTGGACACCAAAAC
ACCGGTACCACGAGCAGCAAAAGCAGCAGCAGCAACAGCAGCAGCCGTGA
CCGCCACCGCGAGGAAGGAGCATCCCGTCGCCTCTTCGTCAAGCTCCACA
GCGCCCGGACGCGTAGGGCCGCGATCACCAACGAGCATTGCCGCCGTTCG
TCCATCCTCGAGATGAGCGCCCTCGGACGCCTCGGCCGTACCTGGGGGCT
GTACCCCTGGGCGCCCTACCTCCCTCGCGGGCCGTACCACACCCCTGGAG
CCGCTTTCCAGGAGTATGACTGGGGCCCCGGTGTTGGCGGCCCCATTACC
GACGGAGTCGACGGCTCGGGCCTTCTGCAGCCCGGGTGGGGCGGTGGTGG
AGGGTGGGGCCGAAGCCGGACGGGATCTTGGGAAAGCGGTGGCGGCGGCG
GCGACGCTGAAATTTCAAGCAGCAATGAAGGCGACTCCTCCGGTATAGTT
AGCGGGGACGCTGTCGTGGCTGCCGTCGCCGGTGATGGCTGCGGCGGCGG
TTGTGAGAGTGGTGGCGGTGGACACCAAAACACCGGTACCACGAGCAGCA
AAAGCAGCAGCAGCAACAGCAGCAGCCGTGACCGCCACCGCGAGGAAGGA
GCATCCCGTCGCCTCTTCGTCAAGCTCCACAGCGCCCGGACGCGTAGGGC
CGCGATCACCAACGAGCATTGCCGCCGTTCGTCCATCCTCGAGATGAGCG
CCCTCGGACGCCTCGGCCGTACCTGGGGGCTGTACCCCTGGGCGCCCTAC
CTCCCTCGCGGGCCGTACCACACCCCTGGAGCCGCTTTCCAGGAGTATGA
CTGGGGCCCCGGTGTTGGCGGCCCCATTACCGACGGAGTCGACGGCTCGG
GCCTTCTGCAGCCCGGGTGGGGCGGTGGTGGAGGGTGGGGCCGAAGCCGG
ACGGGATCTTGG
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