mRNA_S-dermatodea_contig10249.181.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10249.181.1
Unique NamemRNA_S-dermatodea_contig10249.181.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10249.181.1 vs. uniprot
Match: A0A6H5KQ27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ27_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.150e-9
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 2 
Query:    8 RLHGCGVAAGQPTA-MPDPPARSEQFDSETYAAFARMDQERQKVKFLALVREARKRM-------PLAEGCSGVGNHGHKGGGGKSFGASGGGGFPADESAFCQL----------------NPASEVASLIQEFEGKLTRSVDDNAQLRDFCAHLEGLLAVHQGKSGG 436
            + HG G   G P A   D   + +Q   + +A +AR+ QE+Q+ + L LVR+AR++M           GC                     GG PA                        NP++EVASLI++F+ KL+RS+++N QLR FC+HLEGLLA +   S G
Sbjct:  472 QAHGSG--GGAPMAGNDDGQQQPKQPYPDWFAHYARVGQEKQEAEILRLVRDAREKMVSGXXXXXXXXGC---------------------GGKPASXXXXXXXXXXXXXXXXXXGCGTSNPSTEVASLIRQFDEKLSRSLEENTQLRVFCSHLEGLLASNPAPSTG 615
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10249.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ27_9PHAE6.150e-932.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10249contigS-dermatodea_contig10249:1167..2450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10249.181.1prot_S-dermatodea_contig10249.181.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10249 1193..2401 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.4722528-UTR-S-dermatodea_contig10249:1166..11921622924147.4722528-UTR-S-dermatodea_contig10249:1166..1192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10249 1167..1192 -
1694079050.0625424-UTR-S-dermatodea_contig10249:1166..11921694079050.0625424-UTR-S-dermatodea_contig10249:1166..1192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10249 1167..1192 -
1622924147.5057337-UTR-S-dermatodea_contig10249:2401..24501622924147.5057337-UTR-S-dermatodea_contig10249:2401..2450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10249 2402..2450 -
1694079050.0896368-UTR-S-dermatodea_contig10249:2401..24501694079050.0896368-UTR-S-dermatodea_contig10249:2401..2450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10249 2402..2450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.4816508-CDS-S-dermatodea_contig10249:1192..15441622924147.4816508-CDS-S-dermatodea_contig10249:1192..1544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 1193..1544 -
1694079050.0714335-CDS-S-dermatodea_contig10249:1192..15441694079050.0714335-CDS-S-dermatodea_contig10249:1192..1544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 1193..1544 -
1622924147.4906404-CDS-S-dermatodea_contig10249:2171..24011622924147.4906404-CDS-S-dermatodea_contig10249:2171..2401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 2172..2401 -
1694079050.080129-CDS-S-dermatodea_contig10249:2171..24011694079050.080129-CDS-S-dermatodea_contig10249:2171..2401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 2172..2401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10249.181.1

>prot_S-dermatodea_contig10249.181.1 ID=prot_S-dermatodea_contig10249.181.1|Name=mRNA_S-dermatodea_contig10249.181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=194bp
MPDPPARSEQFDSETYAAFARMDQERQKVKFLALVREARKRMPLAEGCSG
VGNHGHKGGGGKSFGASGGGGFPADESAFCQLNPASEVASLIQEFEGKLT
RSVDDNAQLRDFCAHLEGLLAVHQGKSGGEDPPAFVVGSCLGGFVPSPAG
ARGSKLSKAAGGNGKHSTNPLAVCREPFGDRRMRVSFPGSAQD*
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mRNA from alignment at S-dermatodea_contig10249:1167..2450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10249.181.1 ID=mRNA_S-dermatodea_contig10249.181.1|Name=mRNA_S-dermatodea_contig10249.181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig10249:1167..2450- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGTTCGCCTGCATGGTTGCGGCGTCGCCGCCGGCCAACCGACAGCGA
TGCCGGACCCTCCCGCCAGGTCAGAACAGTTCGACTCTGAGACGTACGCA
GCTTTCGCCAGGATGGACCAGGAGAGGCAGAAAGTAAAATTTTTGGCATT
GGTGCGAGAGGCGCGCAAGAGGATGCCACTAGCGGAGGGCTGCAGCGGTG
TCGGAAATCACGGACACAAGGGGGGTGGAGGGAAAAGTTTTGGAGCGTCC
GGCGGCGGTGGCTTCCCTGCGGACGAAAGGTGAAAATGGCGGGGTTGGCT
GTGCTTGTCTCTCCGTTCTATATATGTACTGCAGAGTTCGGCTCGCTGTG
AATTTCGTGGGTCGCCCGTTCAACCCGTCCCGATGAGTCATGGATTATGC
ACTTTCTGTGTTGAGTTTTTTATATATATATGTGTATGTAAACATAACAA
ATTGGATCGAGCTGCTGCTTCTCGTTCCAAGGAAGCAAAACCACGACAGG
CGGTATCGTTATTTGCCTTTTCGTCTTGCTGTTGTTGTCATTTAGATGGC
AATTCGTGTCGGCTCCTTGAATATTCAACATTCCATCCCTGGCGAGGGTG
CAGACCCCCCCCCCAAAACAAATATTTCAGAGCATATAGTGAGCGCCTCC
CCTCAGTTGGTTCGTGCGGATTCCGCTCGCTATAGCCTGTCGCTCACCCC
CAAGTCACCACTTAGCTGTGGATGAGACACGGTTTGCCCTGACTTGTATC
TCGTACAACACCGGCGAATACGTGATAGTTGGGACGTGTACAATAGATTA
TAACAACTGCTTATTACTGCTGTCCGTGCTTGTAAGCTTGTTTTTTCCGA
TACTCACTTCCCATCACGCCTTGCAACCGCTCACGGGTACTGCTACGCGG
TCGCAGTGCGTTTTGCCAGCTCAACCCGGCCAGCGAGGTGGCTTCTCTGA
TCCAAGAGTTCGAGGGGAAGCTCACGCGGTCCGTCGACGATAACGCCCAG
CTCAGGGACTTCTGTGCCCACCTAGAAGGGCTGCTAGCGGTTCATCAGGG
GAAAAGTGGAGGAGAGGACCCACCCGCGTTTGTTGTCGGCTCCTGCCTTG
GAGGGTTTGTCCCCTCTCCTGCTGGCGCACGTGGTAGCAAGCTTAGCAAG
GCAGCGGGGGGCAACGGCAAGCATAGCACGAATCCCTTGGCCGTGTGCCG
CGAGCCGTTCGGGGACAGGAGGATGCGGGTGTCTTTTCCCGGATCTGCCC
AAGACTAGCGGTAGTGTTTGTTTGCCTGGTTGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10249:1167..2450-

>mRNA_S-dermatodea_contig10249.181.1 ID=mRNA_S-dermatodea_contig10249.181.1|Name=mRNA_S-dermatodea_contig10249.181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig10249:1167..2450- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGGACCCTCCCGCCAGGTCAGAACAGTTCGACTCTGAGACGTACGC
AGCTTTCGCCAGGATGGACCAGGAGAGGCAGAAAGTAAAATTTTTGGCAT
TGGTGCGAGAGGCGCGCAAGAGGATGCCACTAGCGGAGGGCTGCAGCGGT
GTCGGAAATCACGGACACAAGGGGGGTGGAGGGAAAAGTTTTGGAGCGTC
CGGCGGCGGTGGCTTCCCTGCGGACGAAAGATGCCGGACCCTCCCGCCAG
GTCAGAACAGTTCGACTCTGAGACGTACGCAGCTTTCGCCAGGATGGACC
AGGAGAGGCAGAAAGTAAAATTTTTGGCATTGGTGCGAGAGGCGCGCAAG
AGGATGCCACTAGCGGAGGGCTGCAGCGGTGTCGGAAATCACGGACACAA
GGGGGGTGGAGGGAAAAGTTTTGGAGCGTCCGGCGGCGGTGGCTTCCCTG
CGGACGAAAGTGCGTTTTGCCAGCTCAACCCGGCCAGCGAGGTGGCTTCT
CTGATCCAAGAGTTCGAGGGGAAGCTCACGCGGTCCGTCGACGATAACGC
CCAGCTCAGGGACTTCTGTGCCCACCTAGAAGGGCTGCTAGCGGTTCATC
AGGGGAAAAGTGGAGGAGAGGACCCACCCGCGTTTGTTGTCGGCTCCTGC
CTTGGAGGGTTTGTCCCCTCTCCTGCTGGCGCACGTGGTAGCAAGCTTAG
CAAGGCAGCGGGGGGCAACGGCAAGCATAGCACGAATCCCTTGGCCGTGT
GCCGCGAGCCGTTCGGGGACAGGAGGATGCGGGTGTCTTTTCCCGGATCT
GCCCAAGACTAGTGCGTTTTGCCAGCTCAACCCGGCCAGCGAGGTGGCTT
CTCTGATCCAAGAGTTCGAGGGGAAGCTCACGCGGTCCGTCGACGATAAC
GCCCAGCTCAGGGACTTCTGTGCCCACCTAGAAGGGCTGCTAGCGGTTCA
TCAGGGGAAAAGTGGAGGAGAGGACCCACCCGCGTTTGTTGTCGGCTCCT
GCCTTGGAGGGTTTGTCCCCTCTCCTGCTGGCGCACGTGGTAGCAAGCTT
AGCAAGGCAGCGGGGGGCAACGGCAAGCATAGCACGAATCCCTTGGCCGT
GTGCCGCGAGCCGTTCGGGGACAGGAGGATGCGGGTGTCTTTTCCCGGAT
CTGCCCAAGACTAG
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