mRNA_S-dermatodea_contig10248.180.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10248.180.1
Unique NamemRNA_S-dermatodea_contig10248.180.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10248.180.1 vs. uniprot
Match: D7G4Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.520e-20
Identity = 37/53 (69.81%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 MGSLSDAVGMGKLPVSIQYVVVGLVVAHVVAFAYWILRITTDRKKLEMRFKEE 159
            M ++++A+G+G LPV IQY V+GLVVAHV+AF+YW+LRITTD+K+LEMRFKEE
Sbjct:    1 MTAIANALGLGNLPVGIQYAVIGLVVAHVLAFSYWLLRITTDKKRLEMRFKEE 53
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10248.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q5_ECTSI4.520e-2069.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10248contigS-dermatodea_contig10248:3976..4631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000770.1
Exons2
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.4335637-CDS-S-dermatodea_contig10248:3975..40471622924147.4335637-CDS-S-dermatodea_contig10248:3975..4047Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10248 3976..4047 +
1694079050.0390158-CDS-S-dermatodea_contig10248:3975..40471694079050.0390158-CDS-S-dermatodea_contig10248:3975..4047Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10248 3976..4047 +
1622924147.4444811-CDS-S-dermatodea_contig10248:4541..46311622924147.4444811-CDS-S-dermatodea_contig10248:4541..4631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10248 4542..4631 +
1694079050.0540485-CDS-S-dermatodea_contig10248:4541..46311694079050.0540485-CDS-S-dermatodea_contig10248:4541..4631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10248 4542..4631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10248.180.1prot_S-dermatodea_contig10248.180.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10248 3976..4631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10248.180.1

>prot_S-dermatodea_contig10248.180.1 ID=prot_S-dermatodea_contig10248.180.1|Name=mRNA_S-dermatodea_contig10248.180.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MGSLSDAVGMGKLPVSIQYVVVGLVVAHVVAFAYWILRITTDRKKLEMRF
KEE*
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mRNA from alignment at S-dermatodea_contig10248:3976..4631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10248.180.1 ID=mRNA_S-dermatodea_contig10248.180.1|Name=mRNA_S-dermatodea_contig10248.180.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=656bp|location=Sequence derived from alignment at S-dermatodea_contig10248:3976..4631+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTCTCTTTCGGATGCCGTGGGGATGGGGAAGCTGCCGGTTTCCAT
CCAGTACGTCGTGGTTGGCTTGGTGAGGCACGGAGAAGTTTGTTTACTTT
TGGGTCTTCTTTTCTCTTTTGTTTGTTTTCCACCACCTCTTTTTCGCAAG
CGCTGATGTTGGGTGCTGGGCTTCTGGTGTGTTCACCACCGCACGCAAGC
CCTGCAATCGAGCACTCGCCACACGCACCCCTACTGCTAACTGATGTTGC
GTGGTTTACCATCGTGTGGCATTGGGTATGTATCTGCTTCGAATCTCCAC
CCCGACCCCCGTCGCCCTGTGTGAGTAGTGCCTGCACTGAATGAAGACTT
GCCAGCACAAAATATGGAGACACACGTGCATCCTGCTATGATATTGTGGC
TTCCTACCCCAAAACCGAGTATGATGCAGCGGTAGTACGATACAAACATT
ACCAGCTCTTTCCCTCGAAGCCTTGCGTTCGCTCTTGAGCCTGCGCAAAG
TTTTCGCCGGGTGGCAAACCACTGAACACTGGCCACCGACCTCCGAACGC
GCTCTCTTCCTTGAAGGTGGTTGCGCACGTCGTGGCCTTCGCGTACTGGA
TCCTGCGGATAACGACCGACAGGAAGAAGCTCGAAATGCGCTTCAAGGAG
GAATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10248:3976..4631+

>mRNA_S-dermatodea_contig10248.180.1 ID=mRNA_S-dermatodea_contig10248.180.1|Name=mRNA_S-dermatodea_contig10248.180.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig10248:3976..4631+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTCTCTTTCGGATGCCGTGGGGATGGGGAAGCTGCCGGTTTCCAT
CCAGTACGTCGTGGTTGGCTTGATGGGCTCTCTTTCGGATGCCGTGGGGA
TGGGGAAGCTGCCGGTTTCCATCCAGTACGTCGTGGTTGGCTTGGTGGTT
GCGCACGTCGTGGCCTTCGCGTACTGGATCCTGCGGATAACGACCGACAG
GAAGAAGCTCGAAATGCGCTTCAAGGAGGAATAGGTGGTTGCGCACGTCG
TGGCCTTCGCGTACTGGATCCTGCGGATAACGACCGACAGGAAGAAGCTC
GAAATGCGCTTCAAGGAGGAATAG
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