mRNA_S-dermatodea_contig10212.155.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10212.155.1
Unique NamemRNA_S-dermatodea_contig10212.155.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10212.155.1 vs. uniprot
Match: D8LG26_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG26_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.550e-38
Identity = 81/154 (52.60%), Postives = 100/154 (64.94%), Query Frame = 1 
Query:   31 SILGYIRKASRTFTNNPFGSAGHNSGAHGSPASPHH----SSLGHGPVTLAARGKLTEEDEAMLSDSEADYDAFDSISEGTRKKLLSPNLRFLRWYATYMLVALLVFVCYMPVRVGFFSTEKGTWSKIDFLWNILFIGDMILRLNTGFVNNDTG 480
            S+L   RKAS +F++N   S  H           HH    S L      + ARGKLTE DEAMLSDSEADYDAFD+ SE   KKL SPN RFLRWYAT+MLVALL FV Y P+R+ FF +E+G W  ID +W+++F  D+++ LNTGFV+   G
Sbjct:  158 SMLAMFRKASHSFSSNSAMSRSHRG---------HHQRNTSDLQGLQRRMPARGKLTEADEAMLSDSEADYDAFDNNSERVDKKLFSPNFRFLRWYATFMLVALLTFVFYNPIRIAFFPSERGAWYGIDLVWHLVFAIDVLVHLNTGFVDGTDG 302
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BLAST of mRNA_S-dermatodea_contig10212.155.1 vs. uniprot
Match: A0A6H5J6P9_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6P9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.220e-31
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:  205 MLSDSEADYDAFDSISEGTRKKLLSPNLRFLRWYATYMLVALLVFVCYMPVRVGFFSTEKGTWSKIDFLWNILFIGDMILRLNTGFVNNDTG 480
            MLSDSEADYDAFD+ SE    KL SPN RFLRWYAT+MLVALL FV YMP+R+ FF +E+G W  ID  W++LF  D+++ LNTGFV+  TG
Sbjct:    1 MLSDSEADYDAFDNDSERVGTKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWFGIDLAWHVLFAIDVLVHLNTGFVDGTTG 92
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10212.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG26_ECTSI2.550e-3852.60Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5J6P9_9PHAE1.220e-3164.13Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10212contigS-dermatodea_contig10212:2084..4447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LG26
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size487
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10212.155.1prot_S-dermatodea_contig10212.155.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10212 2084..4445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.5193803-CDS-S-dermatodea_contig10212:2083..21241622924145.5193803-CDS-S-dermatodea_contig10212:2083..2124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 2084..2124 +
1694079048.7407398-CDS-S-dermatodea_contig10212:2083..21241694079048.7407398-CDS-S-dermatodea_contig10212:2083..2124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 2084..2124 +
1622924145.5323067-CDS-S-dermatodea_contig10212:3019..31611622924145.5323067-CDS-S-dermatodea_contig10212:3019..3161Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 3020..3161 +
1694079048.755707-CDS-S-dermatodea_contig10212:3019..31611694079048.755707-CDS-S-dermatodea_contig10212:3019..3161Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 3020..3161 +
1622924145.5449696-CDS-S-dermatodea_contig10212:3828..40281622924145.5449696-CDS-S-dermatodea_contig10212:3828..4028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 3829..4028 +
1694079048.7640812-CDS-S-dermatodea_contig10212:3828..40281694079048.7640812-CDS-S-dermatodea_contig10212:3828..4028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 3829..4028 +
1622924145.5570471-CDS-S-dermatodea_contig10212:4345..44451622924145.5570471-CDS-S-dermatodea_contig10212:4345..4445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 4346..4445 +
1694079048.779466-CDS-S-dermatodea_contig10212:4345..44451694079048.779466-CDS-S-dermatodea_contig10212:4345..4445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10212 4346..4445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10212.155.1

>prot_S-dermatodea_contig10212.155.1 ID=prot_S-dermatodea_contig10212.155.1|Name=mRNA_S-dermatodea_contig10212.155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
LSSSDGHRQNSILGYIRKASRTFTNNPFGSAGHNSGAHGSPASPHHSSLG
HGPVTLAARGKLTEEDEAMLSDSEADYDAFDSISEGTRKKLLSPNLRFLR
WYATYMLVALLVFVCYMPVRVGFFSTEKGTWSKIDFLWNILFIGDMILRL
NTGFVNNDTGI
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mRNA from alignment at S-dermatodea_contig10212:2084..4447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10212.155.1 ID=mRNA_S-dermatodea_contig10212.155.1|Name=mRNA_S-dermatodea_contig10212.155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2364bp|location=Sequence derived from alignment at S-dermatodea_contig10212:2084..4447+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGTCTTCCTCTGACGGGCACCGGCAAAACTCCATTCTAGGGCGAGTTTT
GTGGGGTTTCCGCAAGATTCGCTCTGTTTTCTTGGCTTGACTCTTCTTTC
CCTTGTCCTGTTTATGCTGCTTGTATGTACCTGGTGTGGCAGCTGATGCG
TTCGTCGATGAAAGTTGAACATAAGAGCTTCGGGGATCTTCCACTGCCGG
CGGTACAACACGCCCGGAACGTGGAGTGGTTTAAGTTGCCTGAAGGGGCA
GACGTTCGTCGCACGCCCTCCTTGAAAAGCAGTATAAAAGGACCTCCCCC
GCCCAGACAATGTCCATTGTACGACAAGGAGAGATAAGTGTGTATGACTG
AACTGGGAAAAATCGAAGGTTGGGATAGATATTATTTTGAAGCATGGGAC
AGCCAGACGAAGGCAGTAGCAGAACTCGGGGACAAAGAGTGGCCCGAAAA
ACAAGAGCTCATGCAGATATATATATACTAGGGCAAAGTTTTTATGACAC
CGTTGGCTGAGTACGAAGGGAAGATTGGCTATCTGCAATTATGCTGTGGG
AACAGTGCTCCGTCTTTCCCGAGGACACGTTGTCAATGTCCTAACAGCTG
AGGCGTTTAAAACTTGAGCCCCCCCCCCTCCCCCCCCTACACACACACCC
GCCTGAAAACGGGAAAAATATATGTAGCAGAATTAACCATGGCAATCTCA
TTCGCGCTTGGTTTGGTTTGAAGGGCATAAAGTTGGATCGCGATTTGTCC
GACGTAAGGGACCACTGCAGCTTGGCTAATGGATGATGTTCAGACTAACG
CCTCCTATCCCAACCCCAATACGGTGCGCACGTGGCACATTGCACAAACG
TGCCTCGCCCGAGAAAGCCGATACCGACCCCGCCCCTCGACTTTGGCGCA
ATGCCGTTACGCTGACTCCTGTTTTTGTCATGTCAGCTACATCCGGAAGG
CGAGCCGAACTTTCACGAACAACCCTTTCGGCTCAGCTGGTCACAATTCT
GGCGCTCATGGCTCACCCGCCTCCCCGCATCACAGCAGCCTCGGCCACGG
CCCCGTCACATTGGCGGCACGTGGCAAGGTGGGGACTACAAATGTGCTTC
TGTGCATGGGTTTTGATCGGGTAGAGTTGCGAGGTCGCGTCATCGCGGAT
GCGTGAGGGACTCAGGCGAGCTGTATGTTTGGAGGCTTACGTCGCAGCAA
ATTGCGTCAGCGCGTACAGATCTCGCTGTCACGGATGTGCATAGTGTTGG
GTATGAAGCTCTGCGCGGCAGTTGGCGTTTACAGCGGCGGCAGGAGGGGG
TTTTTGGTCAAATCGCGACAACAAACCCGTTCGGAGCCTTGCCGTCGTGG
CGATGTATCAATGACTCCCTCGATACAGGGTGTACGAGAACGACGCACGT
GCTCTCCGGGCGAATTATTGGCGTGTGCTTGTCATTTGCGACGAAGCACA
TATCATAGCTGTGAACACCGGTCGAGGTTATGTCCTCTCTGTAACAAACA
AGGGCACTCGAGCGATTATGGCAAAGGCGCGTCTGATCGAAGTTGGAGAC
GCCGCGTCATGGATACCCCGACACGACGGCAAGCGCGAATTTCCGCCCAA
TCTCTCTCTTTCCGCCCGCGGCCGGTTGTGGAGCGTATCGATATTTGATA
TTTCCGCCTGAAGAAAGAGACTCTCTTCCGACCCGCCTTGCCCTACGTTG
CCCCAACCCACTGCGCCAATCGAACGCCCCATGGTGCTATCGTAGTTGAC
GGAGGAAGATGAGGCCATGCTCTCTGACTCGGAGGCAGACTACGACGCGT
TCGACAGCATCTCCGAGGGAACTCGAAAGAAACTTCTGTCGCCCAACCTC
AGGTTCTTGCGGTGGTACGCCACGTACATGCTCGTCGCACTGCTGGTGTT
CGTGTGCTACATGCCCGTTCGCGTCGGCTTCTTTTCGACGGAAAAGTGAG
TATGCACTTGTGATACTTGTGTATAATGTTGGGAGATGGAATTGTGACGA
CCGGTGCAAGTATTGCTGGAGGAAATTTGCCTGGAATGGGGTGGTACGGG
GGCATGCCGCCACACGCGATGCGGAGCGCGGGGAAATTCCACAAGCTGCG
TCTCCACGTGGAACCCCCCGTCGAAACTCATATATGGTATATGATACGTC
GTTTTTAACCTCGGAAGGCACTGTGGTGGCTCTTTGTCCGCTGATTTTTA
ATGGCCCCTTCCTATCCTCTCCCCGACACTGCTTATTGCCTGCTGCCTTG
TTTTCGTTTCAGGGGCACGTGGTCGAAAATCGACTTCCTCTGGAACATTC
TGTTCATTGGGGACATGATACTTCGCCTTAACACCGGCTTTGTCAACAAC
GACACCGGCATCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10212:2084..4447+

>mRNA_S-dermatodea_contig10212.155.1 ID=mRNA_S-dermatodea_contig10212.155.1|Name=mRNA_S-dermatodea_contig10212.155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at S-dermatodea_contig10212:2084..4447+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGTCTTCCTCTGACGGGCACCGGCAAAACTCCATTCTAGGTTGTCTTCC
TCTGACGGGCACCGGCAAAACTCCATTCTAGGCTACATCCGGAAGGCGAG
CCGAACTTTCACGAACAACCCTTTCGGCTCAGCTGGTCACAATTCTGGCG
CTCATGGCTCACCCGCCTCCCCGCATCACAGCAGCCTCGGCCACGGCCCC
GTCACATTGGCGGCACGTGGCAAGCTACATCCGGAAGGCGAGCCGAACTT
TCACGAACAACCCTTTCGGCTCAGCTGGTCACAATTCTGGCGCTCATGGC
TCACCCGCCTCCCCGCATCACAGCAGCCTCGGCCACGGCCCCGTCACATT
GGCGGCACGTGGCAAGTTGACGGAGGAAGATGAGGCCATGCTCTCTGACT
CGGAGGCAGACTACGACGCGTTCGACAGCATCTCCGAGGGAACTCGAAAG
AAACTTCTGTCGCCCAACCTCAGGTTCTTGCGGTGGTACGCCACGTACAT
GCTCGTCGCACTGCTGGTGTTCGTGTGCTACATGCCCGTTCGCGTCGGCT
TCTTTTCGACGGAAAATTGACGGAGGAAGATGAGGCCATGCTCTCTGACT
CGGAGGCAGACTACGACGCGTTCGACAGCATCTCCGAGGGAACTCGAAAG
AAACTTCTGTCGCCCAACCTCAGGTTCTTGCGGTGGTACGCCACGTACAT
GCTCGTCGCACTGCTGGTGTTCGTGTGCTACATGCCCGTTCGCGTCGGCT
TCTTTTCGACGGAAAAGGGCACGTGGTCGAAAATCGACTTCCTCTGGAAC
ATTCTGTTCATTGGGGACATGATACTTCGCCTTAACACCGGCTTTGTCAA
CAACGACACCGGCATCGGGCACGTGGTCGAAAATCGACTTCCTCTGGAAC
ATTCTGTTCATTGGGGACATGATACTTCGCCTTAACACCGGCTTTGTCAA
CAACGACACCGGCATC
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