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Homology
BLAST of mRNA_S-dermatodea_contig10200.147.1 vs. uniprot
Match: D8LJJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ6_ECTSI) HSP 1 Score: 321 bits (822), Expect = 9.780e-101 Identity = 168/252 (66.67%), Postives = 196/252 (77.78%), Query Frame = 1
Query: 1 VRSILGKSPGERTSREISYIARNVLSHHVAFQQMPLLTLERIASRLTDMVGSRGGEVLVAHEESVTGFLLLLTGSASIVSSSKVIRCPLKLVRAAEKRDCVDRCVSARAMKSLAVPPELRKRWDVRNIVAEMSTPKSALDVAGFRDIPASLKTRVAAALRLEVWPPFRELLRDDDCASTYFVIVKGSISLQAVAKSQRFTMEPIDIPENSHLKNLDVDNGLALEEWKASGLGPCAAILCERQVLGEYPNSEQ 756
VR L K+PG RT REISYIARNVLSHHVAFQQM L+LERIASRLT+ GGEVLV H + VTGFL+LL GSA I+ SKVIR ++LVRAAEK+ + V RA++SLAVPPE R R DV+NIV E+STPK LD+A FR +PA LKTR+AAALRLEVWP F EL+RD+ TY IVKGSISLQAV + RFT+E +DIP HLKN DVDN L+LE+W+ASGLGPCAA+ +RQVLGEYPNSE+
Sbjct: 46 VRRTLAKTPGLRTWREISYIARNVLSHHVAFQQMAALSLERIASRLTNRTVVAGGEVLVEHGKKVTGFLILLRGSARIMEVSKVIRGDVELVRAAEKQAGGEHPVGTRALRSLAVPPERRTRRDVKNIVNELSTPKGGLDIARFRHVPACLKTRIAAALRLEVWPAFSELIRDEKDPKTYLFIVKGSISLQAVTNANRFTVETLDIPAAGHLKNFDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEE 297
BLAST of mRNA_S-dermatodea_contig10200.147.1 vs. uniprot
Match: A0A6H5KBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT9_9PHAE) HSP 1 Score: 272 bits (695), Expect = 9.630e-83 Identity = 142/219 (64.84%), Postives = 169/219 (77.17%), Query Frame = 1
Query: 100 MPLLTLERIASRLTDMVGSRGGEVLVAHEESVTGFLLLLTGSASIVSSSKVIRCPLKLVRAAEKRDCVDRCVSARAMKSLAVPPELRKRWDVRNIVAEMSTPKSALDVAGFRDIPASLKTRVAAALRLEVWPPFRELLRDDDCASTYFVIVKGSISLQAVAKSQRFTMEPIDIPENSHLKNLDVDNGLALEEWKASGLGPCAAILCERQVLGEYPNSEQ 756
M L+LERIASRLT+ GGEVL+ H + VTGFL+LL GSA I+ SK IR ++LVRAAEKR + V ARAM+SLAVPPE R + DV+NIV EMSTPK LD+A FR IPA LKTR+AAALRLEVWP F EL+R + TY IVKGS+SLQAV K+ RFT+E +DIP HLK+LDVDN L+LE+W+ASGLGPCAA+ +RQVLGEYPNSE+
Sbjct: 1 MAALSLERIASRLTNRTVVAGGEVLIEHGKKVTGFLILLRGSARIMEVSKAIRGDVELVRAAEKRASGEHPVGARAMRSLAVPPERRTQRDVKNIVNEMSTPKGGLDIARFRHIPACLKTRLAAALRLEVWPAFSELIRHEKDPKTYLFIVKGSVSLQAVTKANRFTVETLDIPAAGHLKSLDVDNALSLEDWRASGLGPCAAMHFDRQVLGEYPNSEE 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | RmlC-like jelly roll fold |
| Ec32 ortholog | Ec-17_002230.1 |
| Exons | 6 |
| Model size | 756 |
| Cds size | 756 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10200.147.1 >prot_S-dermatodea_contig10200.147.1 ID=prot_S-dermatodea_contig10200.147.1|Name=mRNA_S-dermatodea_contig10200.147.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=252bp
VRSILGKSPGERTSREISYIARNVLSHHVAFQQMPLLTLERIASRLTDMV
GSRGGEVLVAHEESVTGFLLLLTGSASIVSSSKVIRCPLKLVRAAEKRDC
VDRCVSARAMKSLAVPPELRKRWDVRNIVAEMSTPKSALDVAGFRDIPAS
LKTRVAAALRLEVWPPFRELLRDDDCASTYFVIVKGSISLQAVAKSQRFT
MEPIDIPENSHLKNLDVDNGLALEEWKASGLGPCAAILCERQVLGEYPNS
EQ back to topmRNA from alignment at S-dermatodea_contig10200:1709..7828+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10200.147.1 ID=mRNA_S-dermatodea_contig10200.147.1|Name=mRNA_S-dermatodea_contig10200.147.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6120bp|location=Sequence derived from alignment at S-dermatodea_contig10200:1709..7828+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGCAGCATTCTCGGCAAGTCACCCGGAGAGCGCACGTCGAGGGAGAT
CAGCTACATCGCGCGCAATGTCCTGTCTCACCACGTCGCCTTTCAACAGA
TGCCGCTGCTTACACTGGAGCGAATCGCGAGTCGCCTTACGGATATGGTT
GGAAGTCGAGGGGGGGAGGTACGCACGCGTGAACACGGACGTGAGGGGAT
ACACGACGGTGAAAAAACAAATCGCGAAACGAGTCAGTCAAGTGAACAGA
TAAAAACAAAAAGGCTGAGAGCACTAAGGTGATGAACACTCGCAGCGACG
GCTTCGAAGCGGAGAGAAAGGTTTATCGGGTATGATACGCTTTCTACCTT
GCGTAGATACGGGTTAGGCACACGGCGAACTCTTGCGGCAATGGTTCGCG
CGTCATATCACATTCAGGTTGCACTGCGCATCACGCGATACCGCAACGCT
CGTTTCGATCGCGCTTTTTCCTTTAAGAAAAAGCATGAACACAAACATGT
ACATGTACTGGTAGTAACATTATCCTCCACCCTAGGCCATAAAGCGTGGC
GCGGCACTCGCTGCAACACTTTCCCCAGCGGCCAGGTTCGCAACCATTTT
GTACACACACGAACGATGGGGGACGTCGTCCCGCTCTCACGCTCTTCACA
TTGGTCAGGCGAACCAACATGCCACACCTGCACTACCGATACGACGAAGA
TTCTCGAAGAGACATTGCAACGCCATTTTTCGTTTTATCGGATCACGTGC
CAGGTTTTGGTAGCACACGAAGAAAGTGTCACCGGTTTCCTGCTTCTGCT
CACGGGGTCTGCAAGCATCGTTTCCAGCTCGAAGGTACCGAGCATCATAA
GCGAAATGGAGGTCTGCGCTTTCAGGTTTCGATCGTATACAATTTATGTG
CCTTCATGTGACCACGAGCGGGATCAGCATCCACTTTTGCAATTGCAGAA
ATGGCGGGCCGGTCGGTTATATGTGTGATACTCAATCCATAAAAACAATC
AATCCCCTTGACAATGGCGGGAGACCTGCAAGTTTTTCTCCAGACACTGC
GTAATGACTACTATATTGTAGGCAGCCGTAATCGAAAGAGCTGGGTGCAG
CGTAATTCAAAGAGCTGGGTGCAGTGTAGTCCAAAGACCTGGGAGCATCG
AGATGTATGACATGTGGTTTGCGTTTTTTCCCCCCAAAAGCCCCTGCGGA
CCATGCTTGGAACAGGCCGCCTATGCGGGGTCGAGTTTGAAATGCTCGCT
GTCTGTCCTATTTTCTCCCTTTACGATTGGAGGCATGCGTCTGTTGGCAG
CGTGCAACATGGTCCCCTCGTTCCCTTGATCGTGCGGCAAAGGGGATGTG
CCCAAGGGTGCGCAACCTTGGCTTGACGCCCAACGTATTACCAACTCGTA
GTAGCTGCTTCCTAGATTCGCCCTACCGCGCGAAGGCACAGGTTGGAACG
AGTTACCTAGATGGGAGTGAGCTCAATGTCAAGGGTTTAGATAAACCACG
CGTGGTCCACAAATACGACCGTTCCGTTGATAGATCGATTGATTGATTGT
CACGCATGCAGGCGACCGGCCTCTCCACCCCCGATCCCACTCGTGGTTCG
CAAAAAAAGGTACAGAAGGTCCACACGGAAGATACCACCAACAATACGCA
TCCACAGTAGCGGTCGCAAAAAAGGTATCATACAGAAGGTACACACCGAA
GATCCCACCAACAACTGGCGTCTACAAACACGACGAGATAAAACCAACCA
AGAGCCAGCCTCAAACGAAGACAATCCCAATACCTAGAACGACACCTGAC
TACCATAGCGGCAACACTAGTGTGAGAAAAGCCTCGTTCCCTCCCCTCTC
CATCCAACAGGAAAGGGGTCGCTCAATGGTTCGGCGGATGAAAGTCGGGC
GGCTCGAGCCGGGTGACTTGTGGGGCGTTCAGCACATGCAGACCGGGGCG
GAAGCTAAGTTCGAGATACTGGCGGTTGAGAGCTGCGAGGTGGGGACAGG
AGAGTGACTGTGCTTCTCTTGGACAGTAATGAAAAAAACGCCTCCGTTCA
AATGGATTGGGTAGATTGGTCTAAATGCAATCTTCCCTTGAAAGCACGTG
AACGGATTAAAAACACAAATTGCGCTGGCTTTACCGAACGGCGCGTCTTC
GGGAGGTGGTTGATTGATTTTGATTGATTGATTGATTGATTGATTGTCGT
ACGTTAACCGACCGGCCCGCCATTTTTTCAGTTGAAAAGTGGACGCTGAT
CCCGCTCGTGGTCACATGAAGGCACAAGAGCAAGTGAAAAGTGAAACCAG
CACAACCAAAAACTGATGTCCAGACACGACAGAGATATGTATGTAGCGCA
CATTATGCCTCTTCCGGAGGGCGACTTGCTCAGGAGACTGACGTACGTAG
GGGAGAGGAGAGGCTCATTTTCGCCACTCTCTGGACATTTGCACCATATC
CCTGTAAGCGTTGAGACCGTTTGTTGGAAGGCAACTTGAGCTCATCATCC
GAAACACAACTACCGAAAGAGACGGATGGATGATAAACTTGAGGTTTGTT
CAATGATGTCTTTGCTATCCCAGTTTGTTTCGAACGAGTCTTGCGCTTGC
TCGCAGCAGCAGTCAACCGACGTATACCTTGGTCATTGTGCTGAAACTAG
GTTATTCTAAGCGCCAGGCTTTCAGCGACAGGAAGGAGAGGGGGGTCGCT
GCGGTTTTTTGTTTTTCAACTGCAGTTAGTTTCATCACGGTCGGAATAAA
GCTGTCGAGTAACGCCACATCTCGACGACAACTTGTACATCCAAAACGTT
ATTTTGCTATGCCAGCACCCGCACTCTTTGAGATAGTTGATCGAGGATAA
GCAAGCGTCAGGTGTGCTCTGATACAAAAATTAACAAACGCCGGTAATTA
TAGCCACAGAGAATCGTCAAAATCCATAGCCCACATCTTTACTAATTAAT
TGCGCTTTGCACGTTTATTTGATTAGAATTTAGAGTGGAGCCTTGATGCA
TAAGTTTGAGGCCAAATATATGGAGAAGAGTATAGTATCTACTACCTATA
CACTTTTTGTAATAATAGGGTTATAGAGTATCCAAACCCACATGTATATC
GCCTGCCAACGCACACCACACGGGCGTAGCCGTGGCTATCCACTAGTTTA
GCAGGATGCTCCCGTCCCTCCGGCTACCAGTTCTCAAGACATACGCTCAA
TTTTTACTCATCGTAAGTCGCGAGAAGGTCCTCTTCAGTTGTGGGTAACG
TCGAACCTTCCTCAGGGATATGCATATATATGCCGATGAGCAGCAGTGCT
CTAATTCCTTTGCGGCAGCAAAAATCCTCGTTGCGCGCGCTCCCAAAAGG
TTATTCGCTGCCCCCTGAAACTCGTGCGAGCGGCGGAGAAACGAGACTGC
GTCGATCGATGCGTGAGTGCAAGGGCGATGAAATCCCTCGCGGTGCCTCC
GGAGCTACGTAAGCGGTGGGACGTGAGAAACATCGTTGCGGAGGTACGGC
AGGCGATCGGGTGAAGATATTGCCACGACATATCATACTGAATCCGAGAG
TTTGTGTGTGCTTCTTGTGTGTATTGCCTAGATGATACGTTCTACGAGAT
GCACGGCGAGGGCAGGCCCGATGAACTTTCGAGAAACCATGTACTTGTGT
ACATTTTCTTTTTCTTTTTCGTTTTATTTTTAGCAGGCCCAGCAATTTCC
GAGGTATGCTCCCTCTGTTTCCGAGAGTTAGTTTATTGTGTCAATTCCTT
CCTTGTATGTACTATTGTATAGGTAATTCCGTAGTTTTTTTTCGATCTCT
CGATTTCTCATCTGACCACGAGCGGGATCGGCATCCATTGGTGGGCCGGT
CGGCTGTAAGTGTGATAATCAATCAAGTAAATAAATCAATCAGTCAATCA
ATCAATCAATCAATCCAATCAACCCCATTGACAGGTCCTGACCCATGTTC
GAATTTCGCCCAGTAACGTTTTTTTGCGAAACACCTTTTGATCCGATTGG
ATCTGACTTTTCTCCTCGTGTTGTTTCCGTGCGGGGCCAGCAGGCGAGCG
CCAAGGCGAAAAAGTTAACGTGTAATATATCTAGGGTTGTGAGCCGGCTC
CGACTATAGTCCGACTGACTAATTTATTGTATAGTCAGTCAGTCGGCTGC
GGGGCATGCCGACTAGTTGACCTTTGGGTTTCATGGTCCTAGTATGGCGT
TTTTTACGCGGCAGTATATACCTGGCGGCGCCGGCTCGCTGCGCTCGCCC
GACCATGGCCAACTTATCGGCGTAGTCGATAGTTGGCAATAGTCGGATAG
TCGATGCCTTCGCCAGCCGATTAGTTTAAGCTGGGTACGCCAGCCGACTC
ACAACCCTAAATATAACCCATCTTACGTACAGTTACATAGCTGAGCTGGA
ACTCCACTGTTTCAGGCCGCCCATTGTACAACAGTTGTATCCTGCTCGTT
CTCCCATCCCTCCAGTATCCACTTTTGTTTTTTTCATGTTCGCTTCCAAC
CAGTATTATCCGAAAACCTGCGAACATGCACAGATGAGCACGCCGAAGAG
CGCCCTCGACGTGGCCGGGTTTCGCGATATTCCCGCGAGTCTCAAGACCC
GTGTCGCAGCTGCGCTACGCCTCGAGGTGGGCTTCCTGTCCAGGATGAAT
TTTTCACTCGCGATATCCCATAAATACGCCGAGGGTGCATTTTTGTTGCT
GTAGGGATTGTGCATCCTGTGACAGACACTTTGATCTCAGCATTTGAAGT
GGAAACGGCGCACCGTCGAAAGTATCGGAGTTTGTCGGGAGGGTCGTTGC
CAATAGTCCAACGCATAGTTTTCCAGGAGGCGTTCTGATTTGCGAGACCT
CACACGTTTGAAATATTACACGCCTTACTGCTTAGTGCAGGTACCCAGCG
ATACGTAGACGAGTGAATCTTAAGCTTTTCCCGAAACACCGCCATTAATA
TTGTGTGGCGTGCGTTTTTTTTCGCTGTATAGGTGTGGCCTCCGTTCCGA
GAGCTGCTGCGGGATGATGATTGTGCCAGCACGTACTTCGTGATTGTGAA
AGGAAGCATCTCCCTGCAGGCCGTGGCTAAATCGCAAAGGTTCGTGCTGG
GCGCTTCCTTCAGAATTTTTCGTTCCCCGCCTTTGGTTTAGGGACGTGCT
CGACCAGAGGCATCGCCCGGGCATAATACGCGCTATTGTAGGCGGTAGAA
CCGGAGAAGAATTCGAAAATTCGAACAGCAGAAAGTCCTGTAAACTAGAC
AGCGGTTACTCAACCAGCTGTCCCTCCAACCCATATGGCATCCTCTGGCG
TTGTGTGCTAGCCTGAGCTCAAACACTACACAACGCAGACTGACTGATGC
AGCTATATACACCCTCTCGGGCCAATGCACTCGTATCGCTCTCCGGGCGG
TTCTCGGAGAGGTTCTCCAAGCGATCCTCTGAACATGAATGACCAACTGG
TCGATGCTCTCGCTCATACAAATCCAGATTCCACGTCTAGAATCCTCTAC
TCCTCTCTTCGTTCCCCGACTTTTGTTTCGGGATGTGCAATGTTGTATAC
CATACCTGCCGATTTTGGCCTCTTTCAACTATAAAGAACACCCCCATACC
CTGAAATGGTAAGCGGGTTCTCGGCGGGTTGGTAGGTACGTACCGTTTGC
AACCTGAGAACCCGCCTGACCACACGCCCCCTTTCGCGAGCAGGCACAGG
ATCAAATGTCCCCCTTCTTCGTTCGTCGAGAGAGGTATTTTACCTCAGCT
ACAAACATAAGCTGATACCCATTCCGAGGAGATACAAGTACAAGTTGGGC
TCGTACTCTCGCTTAAAGTGATTGCCTTGGGTATTCTGCAACGCATAGTC
GACATCCGGTCCAAGCGTGCTTGGCGGCGTGGTTGCGGCCTGCACTGCCT
GTATTCGCGAAAGTCCCGCACGCAGAAGCCGAGCGCGTGTTTTGCGTTCT
CGAACAGATTCACGATGGAGCCTATTGACATACCTGAGAACAGCCACTTA
AAGAACCTGGACGTAGACAACGGGCTAGCTCTGGAAGAGTGGAAAGCAAG
CGGGCTCGGGCCGTGCGCCGCCATCCTCTGCGAGCGGCAGGTTCTGGGCG
AATACCCAAATTCCGAACAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10200:1709..7828+ >mRNA_S-dermatodea_contig10200.147.1 ID=mRNA_S-dermatodea_contig10200.147.1|Name=mRNA_S-dermatodea_contig10200.147.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at S-dermatodea_contig10200:1709..7828+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGCAGCATTCTCGGCAAGTCACCCGGAGAGCGCACGTCGAGGGAGAT
CAGCTACATCGCGCGCAATGTCCTGTCTCACCACGTCGCCTTTCAACAGA
TGCCGCTGCTTACACTGGAGCGAATCGCGAGTCGCCTTACGGATATGGTT
GGAAGTCGAGGGGGGGAGGTGCGCAGCATTCTCGGCAAGTCACCCGGAGA
GCGCACGTCGAGGGAGATCAGCTACATCGCGCGCAATGTCCTGTCTCACC
ACGTCGCCTTTCAACAGATGCCGCTGCTTACACTGGAGCGAATCGCGAGT
CGCCTTACGGATATGGTTGGAAGTCGAGGGGGGGAGGTTTTGGTAGCACA
CGAAGAAAGTGTCACCGGTTTCCTGCTTCTGCTCACGGGGTCTGCAAGCA
TCGTTTCCAGCTCGAAGGTTTTGGTAGCACACGAAGAAAGTGTCACCGGT
TTCCTGCTTCTGCTCACGGGGTCTGCAAGCATCGTTTCCAGCTCGAAGGT
TATTCGCTGCCCCCTGAAACTCGTGCGAGCGGCGGAGAAACGAGACTGCG
TCGATCGATGCGTGAGTGCAAGGGCGATGAAATCCCTCGCGGTGCCTCCG
GAGCTACGTAAGCGGTGGGACGTGAGAAACATCGTTGCGGAGGTTATTCG
CTGCCCCCTGAAACTCGTGCGAGCGGCGGAGAAACGAGACTGCGTCGATC
GATGCGTGAGTGCAAGGGCGATGAAATCCCTCGCGGTGCCTCCGGAGCTA
CGTAAGCGGTGGGACGTGAGAAACATCGTTGCGGAGATGAGCACGCCGAA
GAGCGCCCTCGACGTGGCCGGGTTTCGCGATATTCCCGCGAGTCTCAAGA
CCCGTGTCGCAGCTGCGCTACGCCTCGAGATGAGCACGCCGAAGAGCGCC
CTCGACGTGGCCGGGTTTCGCGATATTCCCGCGAGTCTCAAGACCCGTGT
CGCAGCTGCGCTACGCCTCGAGGTGTGGCCTCCGTTCCGAGAGCTGCTGC
GGGATGATGATTGTGCCAGCACGTACTTCGTGATTGTGAAAGGAAGCATC
TCCCTGCAGGCCGTGGCTAAATCGCAAAGGTGTGGCCTCCGTTCCGAGAG
CTGCTGCGGGATGATGATTGTGCCAGCACGTACTTCGTGATTGTGAAAGG
AAGCATCTCCCTGCAGGCCGTGGCTAAATCGCAAAGATTCACGATGGAGC
CTATTGACATACCTGAGAACAGCCACTTAAAGAACCTGGACGTAGACAAC
GGGCTAGCTCTGGAAGAGTGGAAAGCAAGCGGGCTCGGGCCGTGCGCCGC
CATCCTCTGCGAGCGGCAGGTTCTGGGCGAATACCCAAATTCCGAACAGA
TTCACGATGGAGCCTATTGACATACCTGAGAACAGCCACTTAAAGAACCT
GGACGTAGACAACGGGCTAGCTCTGGAAGAGTGGAAAGCAAGCGGGCTCG
GGCCGTGCGCCGCCATCCTCTGCGAGCGGCAGGTTCTGGGCGAATACCCA
AATTCCGAACAG back to top
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