mRNA_S-dermatodea_contig10186.137.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10186.137.1
Unique NamemRNA_S-dermatodea_contig10186.137.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10186.137.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.630e-30
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:   43 AGCNDPLEMVRQMGSEEYARWSPAARSRALAWLCDEALSAATMNDLVKKVLESREVVDRKDREV 234
            AGCNDPLEMVRQMGSEEY RWSPAARSRALAWLCDEALSAATMNDLVKKV E++EVVDRKDRE+
Sbjct: 1453 AGCNDPLEMVRQMGSEEYKRWSPAARSRALAWLCDEALSAATMNDLVKKVQEAKEVVDRKDREI 1516
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BLAST of mRNA_S-dermatodea_contig10186.137.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.440e-29
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:   46 GCNDPLEMVRQMGSEEYARWSPAARSRALAWLCDEALSAATMNDLVKKVLESREVVDRKDREV 234
            GCNDPLEMVRQMGSEEY RWSPAARSRALAWLCDEALSAATMNDLVK+V E++EVVDRKDRE+
Sbjct:  997 GCNDPLEMVRQMGSEEYRRWSPAARSRALAWLCDEALSAATMNDLVKRVQEAKEVVDRKDREI 1059
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10186.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE1.630e-3092.19DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI1.440e-2990.48Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10186contigS-dermatodea_contig10186:1407..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924144.0690968-CDS-S-dermatodea_contig10186:1406..16401622924144.0690968-CDS-S-dermatodea_contig10186:1406..1640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10186 1407..1640 +
1694079047.7677414-CDS-S-dermatodea_contig10186:1406..16401694079047.7677414-CDS-S-dermatodea_contig10186:1406..1640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10186 1407..1640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10186.137.1prot_S-dermatodea_contig10186.137.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10186 1407..1640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10186.137.1

>prot_S-dermatodea_contig10186.137.1 ID=prot_S-dermatodea_contig10186.137.1|Name=mRNA_S-dermatodea_contig10186.137.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
DHPSTLFGGTADDGAGCNDPLEMVRQMGSEEYARWSPAARSRALAWLCDE
ALSAATMNDLVKKVLESREVVDRKDREV
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mRNA from alignment at S-dermatodea_contig10186:1407..1641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10186.137.1 ID=mRNA_S-dermatodea_contig10186.137.1|Name=mRNA_S-dermatodea_contig10186.137.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=235bp|location=Sequence derived from alignment at S-dermatodea_contig10186:1407..1641+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACCCTTCGACCCTTTTCGGAGGCACGGCAGACGATGGTGCCGGGTG
CAACGACCCCCTTGAGATGGTTAGGCAGATGGGATCCGAGGAGTACGCGC
GTTGGTCTCCGGCGGCGAGAAGCCGAGCCTTGGCATGGCTGTGCGACGAG
GCCCTGTCGGCCGCGACTATGAACGATCTGGTGAAGAAGGTTTTGGAGTC
TCGAGAGGTCGTGGATCGGAAGGACCGGGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10186:1407..1641+

>mRNA_S-dermatodea_contig10186.137.1 ID=mRNA_S-dermatodea_contig10186.137.1|Name=mRNA_S-dermatodea_contig10186.137.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig10186:1407..1641+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACCCTTCGACCCTTTTCGGAGGCACGGCAGACGATGGTGCCGGGTG
CAACGACCCCCTTGAGATGGTTAGGCAGATGGGATCCGAGGAGTACGCGC
GTTGGTCTCCGGCGGCGAGAAGCCGAGCCTTGGCATGGCTGTGCGACGAG
GCCCTGTCGGCCGCGACTATGAACGATCTGGTGAAGAAGGTTTTGGAGTC
TCGAGAGGTCGTGGATCGGAAGGACCGGGAGGTGGACCACCCTTCGACCC
TTTTCGGAGGCACGGCAGACGATGGTGCCGGGTGCAACGACCCCCTTGAG
ATGGTTAGGCAGATGGGATCCGAGGAGTACGCGCGTTGGTCTCCGGCGGC
GAGAAGCCGAGCCTTGGCATGGCTGTGCGACGAGGCCCTGTCGGCCGCGA
CTATGAACGATCTGGTGAAGAAGGTTTTGGAGTCTCGAGAGGTCGTGGAT
CGGAAGGACCGGGAGGTG
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