mRNA_S-dermatodea_contig10168.125.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10168.125.1
Unique NamemRNA_S-dermatodea_contig10168.125.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10168.125.1 vs. uniprot
Match: A0A6H5L374_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L374_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.550e-59
Identity = 97/146 (66.44%), Postives = 114/146 (78.08%), Query Frame = 3 
Query:    6 ECVALVMGSMLLSREGLLREAGQLPPWTSSLRGWRWSFYYAKVDARRCWLTMDDLVRTRWTMNFPAQMPSPASPHLLPSVTCEFHRNFAYTDEGFHQDGLEWHFEDSHRCVKVSSYPALEAERDE-SWGWRLANAHVVFEQQRGQP 440
            ECV+L+MGSMLLSR+GLLR+ GQLP W S +RGWRWSF++A  DA+R W+TM+DL RT W M+FP  + S   P  L +V CEFHR+F YTD GFHQDGL WHFED+H  VKVS+YPALE ERDE SWGWRL NAHV F+Q R  P
Sbjct:  268 ECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHHFVKVSNYPALEVERDEKSWGWRLINAHVTFQQDRALP 413
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BLAST of mRNA_S-dermatodea_contig10168.125.1 vs. uniprot
Match: D8LLT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.500e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 3 
Query:  282 EGFHQDGLEWHFEDSHRCVKVSSYPALEAERDE-SWGWRLANAHVVFEQQRGQP 440
            +GFHQDGL WHFED+HR VKVS+YPALE ERDE SWGWRL NAHV F+Q+R  P
Sbjct:   73 DGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERAVP 126
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10168.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L374_9PHAE1.550e-5966.44F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLT4_ECTSI4.500e-1975.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10168contigS-dermatodea_contig10168:567..6072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1718
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10168.125.1prot_S-dermatodea_contig10168.125.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10168 590..4797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.043439-UTR-S-dermatodea_contig10168:566..5891622924143.043439-UTR-S-dermatodea_contig10168:566..589Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10168 567..589 +
1694079047.0455754-UTR-S-dermatodea_contig10168:566..5891694079047.0455754-UTR-S-dermatodea_contig10168:566..589Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10168 567..589 +
1622924143.0872934-UTR-S-dermatodea_contig10168:4797..60721622924143.0872934-UTR-S-dermatodea_contig10168:4797..6072Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10168 4798..6072 +
1694079047.082884-UTR-S-dermatodea_contig10168:4797..60721694079047.082884-UTR-S-dermatodea_contig10168:4797..6072Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10168 4798..6072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.0549796-CDS-S-dermatodea_contig10168:589..7541622924143.0549796-CDS-S-dermatodea_contig10168:589..754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10168 590..754 +
1694079047.0573106-CDS-S-dermatodea_contig10168:589..7541694079047.0573106-CDS-S-dermatodea_contig10168:589..754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10168 590..754 +
1622924143.0671198-CDS-S-dermatodea_contig10168:2438..25911622924143.0671198-CDS-S-dermatodea_contig10168:2438..2591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10168 2439..2591 +
1694079047.0674088-CDS-S-dermatodea_contig10168:2438..25911694079047.0674088-CDS-S-dermatodea_contig10168:2438..2591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10168 2439..2591 +
1622924143.0767946-CDS-S-dermatodea_contig10168:4695..47971622924143.0767946-CDS-S-dermatodea_contig10168:4695..4797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10168 4696..4797 +
1694079047.0748615-CDS-S-dermatodea_contig10168:4695..47971694079047.0748615-CDS-S-dermatodea_contig10168:4695..4797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10168 4696..4797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10168.125.1

>prot_S-dermatodea_contig10168.125.1 ID=prot_S-dermatodea_contig10168.125.1|Name=mRNA_S-dermatodea_contig10168.125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
MGSMLLSREGLLREAGQLPPWTSSLRGWRWSFYYAKVDARRCWLTMDDLV
RTRWTMNFPAQMPSPASPHLLPSVTCEFHRNFAYTDEGFHQDGLEWHFED
SHRCVKVSSYPALEAERDESWGWRLANAHVVFEQQRGQP*
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mRNA from alignment at S-dermatodea_contig10168:567..6072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10168.125.1 ID=mRNA_S-dermatodea_contig10168.125.1|Name=mRNA_S-dermatodea_contig10168.125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5506bp|location=Sequence derived from alignment at S-dermatodea_contig10168:567..6072+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGAGAGTGTGTGGCTCTGGTGATGGGCTCGATGCTCCTGTCGCGAGAA
GGCCTCCTCAGGGAGGCCGGCCAGCTGCCGCCCTGGACCTCATCTCTGAG
GGGGTGGCGTTGGAGCTTCTACTACGCCAAGGTGGACGCTCGTCGGTGCT
GGCTAACCATGGACGACCTCGTACGCACGCGCTGGACGGTAAGCAGTGCC
TCCCGCTGGTCTTGTTAATGTGCTGAAAAGCTTGCCTTTTGTTTTTCTTC
TTGCCCATCGACACCGCTTATTAACCCTTTCGGTACTAGCCCCCTGTTTG
GGGCGCCTGTTAGCACGTCGTGAGGCGTGCTTGAAGCGGGGCCCTGGGGA
CTTCAATGGGGTATGTGTCAGGAATCGGTGAGAACAGAGCGCAAGGGAAA
CGGGGCTGTAGCTGTCGACTGCCGTCGAGAGAGTTTTTGGTCGTTTCGGA
GAGCCCTATTCATTATTAGTGCTAATTTAATAGTAATTTAATTTAATAGT
ACCAAAAGGGTTAATAATAGTGGCTTTTTACCGCGAGGTCGATCGCTTTG
TCTCGCCACCGAGATTTTGCGCTGTCCTACGCAGGTAGTGCTGCCGGCTA
GAGCCGGCCCGCTCAGGCAAGAAAAGGTTTCCTGCAAGAGGCAGAGCCTT
AGGATGTTGGAGCACAGAGTGAGGAAGCGGCTCGATCTCGTAGTTTGCAT
TTTGTTCACGTTTTGTGGGACGCAGCTGTTGTTTGAACGCGGCATCGTAT
GATACATGTCCTCAGCGAAACGCCGAGAAGGCAAGGCAACTCCCGGTTTT
GAAACAATCAATGTTGAAGTTGAAACCGACGGCGCGTCTTGTTCTGTGTT
CCGAGTCAAGGGAAGTTAATTACTGCCTCCCATCCTGGCCCCGTGTGATA
CCACGTGGCCTTGCTGGGCGGTTGGACACCTGCTAGCCTTTTCCGGTGTG
CATCAATCTCAGTCTCGTCACCGTGCAAATGCGTGTTACTTGTCCACCAT
TTTTTTTTTTTTTTTAGGCACACATATTATAGACCTGCTTTTCCGAGGTC
CGTCTGTAGTCACAAGGGATTATCCCATCTCTCTCTCTTATCTTATCCCC
GGCATGTTCTCACGTTTGACTTTTTATCGCGAATGCATTGGGTTCGGCAC
TCCCGCAGCTCGCCGATTTCTCGGAAATTTGCTTACTCACGCTCTCGCGC
TTTCCGCGGCGGAGGTAGAGAAAACTAATAAAAATGGACTCTGCCGGGGT
TCGAACCACGGTCCTCCGCTAACTGGGATGTTGGTCACCAGTTCAACCAC
GGGGCGCGCGGTTCATACCGGGTACATAATACATACATACTCCAACTCGC
AAGTGCTGAAATCTCTCCCGAAGATTGCGCATTACTTAGTATACATATTA
TTGTATTGTGTCGCAAATCGAAGAACCCGGCGTAAGACATGGGACACGCT
GAACTTAGTCGTGAGTGCTGACATCCTGCGACGCCGCTGTGGAAAGAAGC
AAGAAGCGGCCTGGCTATAAGGCTCTTCCTGCGGCAGTGGAAAGGGTAGC
ATGGCACCATCGGCATCACAGCGGGTGGCACCTTCCTCGGCTCAGTGGTG
CACGCGCAATCCGCGCGCGGGTTCGCTAGATCCACATTTGTTTTGAGCGC
TTGATGAAGGTCTTTCGAGCCAAATCATCAAAACTTGTTCAGTGACTAGA
TCCACATTTTTTTGAGCGCTTGATGAAGATCTTTCGAGACAAAATTCATC
AAACCTTGTTGAGTGACGGAAGACAACATGCGGGAAGTTCGACCTATGAG
CCCTGGCCCTCCAACCTCCTCGCCAACGCCCGTTTTCGTTTTTTTTGCTT
GCCGTGTATATGTATGCTCCAGATGAACTTTCCGGCGCAGATGCCTTCCC
CAGCGTCCCCCCATCTGCTGCCGTCCGTTACGTGCGAGTTCCACCGCAAC
TTCGCCTACACGGACGAGGGCTTCCACCAGGACGGGCTGGAATGGCATTT
CGAAGACAGCCACCGTTGCGTGAAGGTATTTAGCTAAACTTTTGCTTTGG
CAATGTGTGTTATCTTACTAATTAATGCAACAATGACCGATTGTGTGTAC
TGATTTCTGACAAGGATGCTGTCTGATGCCAAACAACTTGATGCTTGTGT
TGAGCGATAGTTTTTTTTGTAAAAGCGAAAACACAGCAGCGACACGCACA
GCACAGCAGCGACACGCACAGCAGCGACACGCACAGCAGCGACACGCACA
GCAGCGACACGCACAGTAGCTCGACCGCGTTCGACTTCCGTGTCGCGTTC
CGTCGGCATTTCGTCCTGCCAACGCACACCTCACACGGGCGTAGCCGCGG
CTACCCACTAGTATATATACGTAATGCGTATTCAAAAGCGGAGGCGGTCT
GGGGCCAACTCTCATGGAGCGATAATGTCATAATTTGGAGAAGAGATAAC
TTTGGAATGTTGATGTTCTTTTGGTTCGCAAGTATAATAGTATGGTAATG
GCAGTCACAACACTAACACTACAGTAGTATTATTGTAAGATATTAGTAGC
TTTGTAATGGATTGGCGCGGGCTTTAGAAAGCTATGAACTTAGCCGATGA
TACTCGGGGATGCTCGATATGCCGAATCGGCGCCACCGAGGCGATCATTG
CCCAAACGCCTGTGAGCACGGCGGCGGAGCAAGAGCAAGGCCGTTCGCCT
TGTTTTTTTTAGCGATGGCGGGGATTAGAGTGCCATCCACGTATATATCA
AAACATGTACCAGTACCTGGTATTATTTTTTTGACGCCCACTCAAACACG
CGGACTGCCTCGGTAAGCTATTACTAATAGTAGTGGCTGTCACTGCCACA
AAAACGCACCCCTAAGAGTGCGTGCACCATCACCATACCAGCCAGCCCCC
AAACCGGCCCACCATCATGTCAAGCGTCTCGGTTCACGGTACAGTAATAC
TTCGTATCTACTTGTGTGCTCTCGTGTGCTCTCGTGTGACGCCAGTGGTA
TTGTGTGTTTAGCGTCATACTTTGTAAACAAACCACGTATATTAGTCGGC
GGAACTATGCTATGCACAAATTTAGCTTGAGGGAAAATTTCTCATTGAGG
GCAGTCTCTGTGAAAAGCGTTTCCAAAATTCTCATCGTGGGCTATATATG
AACCAGGTTTGATTGAATACGGACTCTTTTCGCCAAAGTTCTCACTGAAA
AGGGGCCCGTAAGGTACGCCGATGATGAATATTTGACTTGAGAAATTCCG
CCGAAACGACGTTTTTGTTTTCATTTTCCAAAGTGTGTCCCCCCGTAAGA
GAGGATGGTCCGATGGTACAGTAAGCTGGCGGGGATCAAATAAGCACTTT
CCCAATTATTGTAGTCCCATATCTTCTGCGCGTGGGAACAGGTGCTGTGG
TGTTGGCTATGGCACGAAATGCCACGTCAAATAACTTTCCTGTTTGGGAT
CCTGTTATGGAGGACCATAGTTAACAGGTCCAAATTTGCCACCAGTCTCA
ACCTAGAAACATAGTATTTATCGAGATTTCATGATCGATTTCGTTGTATA
TGACAATTTCTCGTTTGTGTTTCTTCGCGAGACCCTTATGTTGTTGTTTG
GGTATGGTATTGTAGTACTGTATTATACAGTAGTATTCATGGTCAGAATA
GTTGGGTAGTCGTGGTGATGATATTTTTTCCTGATTACGGTGTGTGTGCC
TCTGTAAATAGTGGCCAGATCGGCCGAGCGGAGTCCCGTGACCTCCGGGA
TGTTGGACACAAGGATTCCCCAACGTCATTCGTTCAAACACATTCATTCG
TAACCCATACCTGTACAAGTAGCTTTGATTAATTTCGCACTCAACTGGCG
TTCCTAGTCTACGAGGAGGTAGGAGATGATGGTGATGGTGATGGTGGCGC
TGCACGTAAGGGTGATCCCCCCCCCTGCCCTCTTCCTCTTTTGGACGTTT
TTGTCGGAATATCTATTAAGAGCTTTTGTTTCACGAAGCCGCTTGCTACG
TTTTTTTCGCGGAAAACAACGATCACGCTATCCACCTCTAGGAAGTCCGT
CCCGTGCACTGCTTCGCCTCGATTTCGCCTGCAAGGCTAACATTTTATTC
CTGCGTTTCCGTGGCGCACCCAAACGCAGGTGTCGAGCTACCCAGCGTTA
GAAGCCGAGCGTGATGAGTCTTGGGGATGGAGGCTGGCCAACGCTCATGT
GGTTTTCGAGCAGCAGCGTGGGCAGCCTTGAGGGGAGATGGTGGTTTTCA
AGCAGACGCGTGGGCCGCCTTGAGGGGAGATGACACCTCACTTTCCCCGC
CGAGGTTTGGCTTCCTTGTTGTACTCGTCCCCTTTAACATTTGAGGGCAG
CGGTTTTTGCAGTAGTTTGTGCTCGGCAAAAAACAAAACTCGTCGCCAGG
TAGGCACGTGTTTTGAGCACTGTACTGTTGGCTGGATGGTTTCGTACCCC
GATTCTTGAAGTGCTCTTGTGATTTTATTTTCGAGGCCTATTGTAGTGGG
CAGTGTACAGCTTCACCGACGGCACGGCGACCATCTCTGCCCGCCCCCGC
CAGTGAGCTGCAAATATTTCGTTTTCCTTGATCCGCCGCGTTTTGGAAGT
AAACGTTGGGATAATTCGTAGATTGGTATGCTATTAACAGGAAGATAGTG
AGTGACCTGAGGACGAGCGACAGCAGCACCTTACCGTTCGTGTTGTGGTA
TCATAGTGCACCGGAGGCTCCTCCTTCGTTGTCCTATCACACCCGACAGG
TAATGAATGCTCGTGTCCGGATAGGGCGAGGATTCTGACGCTTTCCGGGA
AGCTCGGAAGGATCGCACGGCCGAGTTGGTGTAGAGCGTTATTAAGGATT
ATTGTTGAATTTCGTAACTCGTACTGTAGTACTCGATTGCTTGCTTTGCG
GAGGCAAAGGCGGAATAGCTGCGCTGGCTGTGGCAAATCGCCGCATCATA
GCATATATATATGTATAGGGAGAGAGAGAGAGCTCCATGTGATTCCAAGT
ATTGCAAGTATTGGGCGAGACGTGCTACCCAACATCAGGGTAGGCGGGTG
GCACGATCGCTATGGTGAGGAGCAATTAGATATACATGAAATGTATGGGG
TAGTTGAGATATTATTATGCCTTTCCTTCATATCAGCGCGAAAGTCTGAC
GGGTATTTTTTTCTCTTTGTGGGCTTCCCGTGATCCATTGATGTCTTCGG
TTCAAGAGAGTAGGGTCGTGTATATAGTCATAATGGCTGCCCTGTGTGGG
CCTTGTTTCTTCGCCCTTGAGCGGGAAGCAGTCCTGCGACTTGTTGTGGT
TGTTTACGAGATAGCACCGGGGGTAGTTAGGACATTAAATTCCTATTGTA
TAGAGCTCTCTCTCTCTATACACTATGTATGGTATACTATAATACTACAG
TTGTATAAAAACAAACATGAATTATGTGCAGTGACAAGTAGTGCTGGTGT
AATTATGCGCCATTGATAAAAACGTAAAAAGCTAAGAGAAGAACATAAGA
GAATCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10168:567..6072+

>mRNA_S-dermatodea_contig10168.125.1 ID=mRNA_S-dermatodea_contig10168.125.1|Name=mRNA_S-dermatodea_contig10168.125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig10168:567..6072+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCTCGATGCTCCTGTCGCGAGAAGGCCTCCTCAGGGAGGCCGGCCA
GCTGCCGCCCTGGACCTCATCTCTGAGGGGGTGGCGTTGGAGCTTCTACT
ACGCCAAGGTGGACGCTCGTCGGTGCTGGCTAACCATGGACGACCTCGTA
CGCACGCGCTGGACGATGGGCTCGATGCTCCTGTCGCGAGAAGGCCTCCT
CAGGGAGGCCGGCCAGCTGCCGCCCTGGACCTCATCTCTGAGGGGGTGGC
GTTGGAGCTTCTACTACGCCAAGGTGGACGCTCGTCGGTGCTGGCTAACC
ATGGACGACCTCGTACGCACGCGCTGGACGATGAACTTTCCGGCGCAGAT
GCCTTCCCCAGCGTCCCCCCATCTGCTGCCGTCCGTTACGTGCGAGTTCC
ACCGCAACTTCGCCTACACGGACGAGGGCTTCCACCAGGACGGGCTGGAA
TGGCATTTCGAAGACAGCCACCGTTGCGTGAAGATGAACTTTCCGGCGCA
GATGCCTTCCCCAGCGTCCCCCCATCTGCTGCCGTCCGTTACGTGCGAGT
TCCACCGCAACTTCGCCTACACGGACGAGGGCTTCCACCAGGACGGGCTG
GAATGGCATTTCGAAGACAGCCACCGTTGCGTGAAGGTGTCGAGCTACCC
AGCGTTAGAAGCCGAGCGTGATGAGTCTTGGGGATGGAGGCTGGCCAACG
CTCATGTGGTTTTCGAGCAGCAGCGTGGGCAGCCTTGAGTGTCGAGCTAC
CCAGCGTTAGAAGCCGAGCGTGATGAGTCTTGGGGATGGAGGCTGGCCAA
CGCTCATGTGGTTTTCGAGCAGCAGCGTGGGCAGCCTTGA
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