mRNA_S-dermatodea_contig10167.124.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10167.124.1
Unique NamemRNA_S-dermatodea_contig10167.124.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: D8LEZ8_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ8_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 6.460e-76
Identity = 128/160 (80.00%), Postives = 142/160 (88.75%), Query Frame = 1 
Query:   58 SGAPIARSTTLAASMRSPDTSSPLRPSHRTDGKTKAKGSGGRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLARKV 537
            SGAPIARS+TLAAS+RS D+SSPLRP HR  GKT     GGR    G G I+QSLRAGLTFPV+RVARHLKE+KL++RVGKGSAVYLAA++EYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLL  VTIAEGGVLPNIH++LLPKK+A K+
Sbjct:    2 SGAPIARSSTLAASIRSSDSSSPLRPVHRNKGKTGGN-KGGRGRVKGSGSISQSLRAGLTFPVARVARHLKEAKLASRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLADVTIAEGGVLPNIHSILLPKKVAAKL 160
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.520e-50
Identity = 90/127 (70.87%), Postives = 103/127 (81.10%), Query Frame = 1 
Query:  166 KGSGGRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLARKVAEG 546
            KG GGR G  G+   +QS +AGL FPV+R+ R+LK+ + ++RVG G+ VYLAAVLEYLCAEILELAGNA RDNKK RI PRHIQLA+RNDEELN+LL  VTIA GGVLPNIHAVLLPKK A K A G
Sbjct:    4 KGKGGR-GAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAKAAAG 129
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A7S3UYM8_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM8_HETAK)

HSP 1 Score: 174 bits (440), Expect = 3.170e-50
Identity = 99/153 (64.71%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:   76 RSTTLAASMRS--PDTSSPLRPSHRTDGKTKAKGSGGRTGRAGRGHITQSL--RAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKK 522
            R+TTLAAS R+   D  SPLRP  R         +GG+    GRG  +QS   +AGL FPV R+ R+LK  + S RVG G+ VYLAAVLEYLCAEILELAGNA RDNKK RI PRH+QLA+RNDEELNKLL GVTI++GGVLPNIH VLLPKK
Sbjct:    3 RATTLAASTRTGADDLKSPLRPKGRLS-------AGGKAAAGGRGKKSQSKSSKAGLQFPVGRIGRYLKNGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTISQGGVLPNIHTVLLPKK 148
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A6V1MPN2_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MPN2_HETAK)

HSP 1 Score: 171 bits (434), Expect = 2.360e-49
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 1 
Query:   76 RSTTLAASMRSPDTS--SPLRPSHRTDGKTKAKGSGGRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLARKVAEG 546
            R+TTLAAS +S  T   SPLRP        K++ +G +     +  +T+S++AGL FPV+RV+R+LK+ + S +VG G+ +YLAAV+EYL AE+LELAGNA RDNKKK I PRHI LAIRNDEELNKLL GVTIA GGVLPNIH+VLLPKK     A+G
Sbjct:    3 RATTLAASTKSGGTGEKSPLRP--------KSRVAGAKAXXXXKKSVTKSMKAGLQFPVARVSRYLKQGRYSKKVGVGAGIYLAAVMEYLSAEVLELAGNAARDNKKKTINPRHITLAIRNDEELNKLLGGVTIASGGVLPNIHSVLLPKKSKTVAAKG 153
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A0L0FI70_9EUKA (Histone H2A n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FI70_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 1.690e-48
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 1 
Query:  166 KGSGGRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLARKVA 540
            KG GG+ G++     T+S RAGL FPV R+ RHL++   + RVG G+ VYLAAVLEYL AEILELAGNA RDNKK RI PRH+QLA+RNDEELNKLL GVTIA+GGVLPNIHAVLLPKK  +  A
Sbjct:    4 KGKGGKGGKSSGKSKTRSSRAGLQFPVGRIHRHLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKKSGKAKA 128
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A7S2CIK1_9STRA (Histone H2A n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CIK1_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.800e-48
Identity = 90/128 (70.31%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:  166 KGSGGRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLAR-KVAEG 546
            KG  GR G+ G    ++S +AGL FPV+RV R+LK+ K + RVG G+ VYLAAVLEYLCAEILELAGNA RDNKK RITPRHIQLA+RNDEELNKLL  VTI+ GGVLPNIHAVLLPKK  + K+A+G
Sbjct:    4 KGKSGR-GKTGGKVTSKSSKAGLQFPVARVGRYLKKGKFATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRITPRHIQLAVRNDEELNKLLGNVTISSGGVLPNIHAVLLPKKTGKAKLAKG 130
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.260e-48
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:  178 GRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLAR 531
            G+ GR G+   T S +AGL FPV R+ R+L++ K + R+G G+ VYLAAVLEYLCAEILELAGNA RDNKK RI PRHI LA++NDEELNKLL GVTIA GGVLPNIHAVLLPKK A+
Sbjct:    5 GKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A7S2V0C6_9STRA (Histone H2A (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C6_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.580e-48
Identity = 96/148 (64.86%), Postives = 112/148 (75.68%), Query Frame = 1 
Query:   64 APIARSTTLAASMRSPDTSSPLRPSHRTDGKTKAKGSGGRTGRAGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAV 507
            A + R +TLAASMR+ +  SPLRP  R     KAK         G+   ++SL+AGL FPV+R+ R+LK+ + S RVG G+ VYLAAVLEYLCAEILELAGNA RDNKK RI PRHIQLAIRNDEELNKLL GVTI++GGVLPNIHAV
Sbjct:    2 ASMQRGSTLAASMRTAE-QSPLRPKGRLSAGKKAK--------KGKSQ-SKSLKAGLQFPVARIGRYLKKGRYSQRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLGGVTISQGGVLPNIHAV 139
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A3P8XRI8_ESOLU (Histone H2A n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XRI8_ESOLU)

HSP 1 Score: 167 bits (422), Expect = 7.390e-48
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:  211 TQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKK 522
            ++S RAGL FPVSR+ARHLK+   +NR+G G+AVYLAA+LEYLCAE+LELAGNA RDNKK RI PRHIQLA+RNDEELN LL GVTI+EGGVLPNIHA LLPKK
Sbjct:   16 SRSSRAGLQFPVSRIARHLKKGHYANRIGVGAAVYLAAILEYLCAEVLELAGNASRDNKKARIAPRHIQLAVRNDEELNTLLGGVTISEGGVLPNIHATLLPKK 119
[Close]
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Match: A0A5J4Y0U0_9CHLO (Histone H2A n=3 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y0U0_9CHLO)

HSP 1 Score: 166 bits (420), Expect = 1.040e-47
Identity = 81/117 (69.23%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:  193 AGRGHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIHAVLLPKKLARKVAE 543
            AG+  +++S +AGL FPV R+AR+LK+ K + R+G G+ VYLAAVLEYL AE+LELAGNA RDNKK RI PRHIQLA+RNDEEL+KLL GVTIA GGVLPNIH+VLLPKK  +K  E
Sbjct:   10 AGKKQVSRSSKAGLQFPVGRIARYLKKGKFATRIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKTGKKAEE 126
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10167.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ8_ECTSI6.460e-7680.00Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A835ZBB6_9STRA2.520e-5070.87Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S3UYM8_HETAK3.170e-5064.71Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A6V1MPN2_HETAK2.360e-4959.75Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A0L0FI70_9EUKA1.690e-4868.80Histone H2A n=1 Tax=Sphaeroforma arctica JP610 Tax... [more]
A0A7S2CIK1_9STRA1.800e-4870.31Histone H2A n=1 Tax=Dictyocha speculum TaxID=35687... [more]
A0A6U2JFS4_9STRA3.260e-4870.34Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A7S2V0C6_9STRA5.580e-4864.86Histone H2A (Fragment) n=1 Tax=Fibrocapsa japonica... [more]
A0A3P8XRI8_ESOLU7.390e-4877.88Histone H2A n=1 Tax=Esox lucius TaxID=8010 RepID=A... [more]
A0A5J4Y0U0_9CHLO1.040e-4769.23Histone H2A n=3 Tax=Trebouxia sp. A1-2 TaxID=26089... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10167contigS-dermatodea_contig10167:1293..4647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue8.1e-61
Seed eggNOG ortholog2880.D8LEZ8
Preferred nameH2AFY
KEGG koko:K11251,ko:K16617
KEGG Pathwayko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.Histone H2A
EggNOG OGsCOG5262@1,KOG1756@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone H2A variant
Ec32 orthologEc-21_006160.1
Exons5
Model size1020
Cds size501
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.9457874-UTR-S-dermatodea_contig10167:1292..13431622924142.9457874-UTR-S-dermatodea_contig10167:1292..1343Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10167 1293..1343 +
1694079046.948452-UTR-S-dermatodea_contig10167:1292..13431694079046.948452-UTR-S-dermatodea_contig10167:1292..1343Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10167 1293..1343 +
1622924143.0094857-UTR-S-dermatodea_contig10167:4179..46471622924143.0094857-UTR-S-dermatodea_contig10167:4179..4647Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10167 4180..4647 +
1694079047.032785-UTR-S-dermatodea_contig10167:4179..46471694079047.032785-UTR-S-dermatodea_contig10167:4179..4647Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10167 4180..4647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924142.960559-CDS-S-dermatodea_contig10167:1343..14231622924142.960559-CDS-S-dermatodea_contig10167:1343..1423Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 1344..1423 +
1694079046.963227-CDS-S-dermatodea_contig10167:1343..14231694079046.963227-CDS-S-dermatodea_contig10167:1343..1423Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 1344..1423 +
1622924142.969135-CDS-S-dermatodea_contig10167:1695..17881622924142.969135-CDS-S-dermatodea_contig10167:1695..1788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 1696..1788 +
1694079046.9713848-CDS-S-dermatodea_contig10167:1695..17881694079046.9713848-CDS-S-dermatodea_contig10167:1695..1788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 1696..1788 +
1622924142.9792302-CDS-S-dermatodea_contig10167:2874..29231622924142.9792302-CDS-S-dermatodea_contig10167:2874..2923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 2875..2923 +
1694079046.9887717-CDS-S-dermatodea_contig10167:2874..29231694079046.9887717-CDS-S-dermatodea_contig10167:2874..2923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 2875..2923 +
1622924142.9907472-CDS-S-dermatodea_contig10167:3423..34831622924142.9907472-CDS-S-dermatodea_contig10167:3423..3483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 3424..3483 +
1694079047.0025194-CDS-S-dermatodea_contig10167:3423..34831694079047.0025194-CDS-S-dermatodea_contig10167:3423..3483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 3424..3483 +
1622924143.0017745-CDS-S-dermatodea_contig10167:3960..41791622924143.0017745-CDS-S-dermatodea_contig10167:3960..4179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 3961..4179 +
1694079047.020953-CDS-S-dermatodea_contig10167:3960..41791694079047.020953-CDS-S-dermatodea_contig10167:3960..4179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10167 3961..4179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10167.124.1prot_S-dermatodea_contig10167.124.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10167 1344..4179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10167.124.1

>prot_S-dermatodea_contig10167.124.1 ID=prot_S-dermatodea_contig10167.124.1|Name=mRNA_S-dermatodea_contig10167.124.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=167bp
MSSGAPIARSTTLAASMRSPDTSSPLRPSHRTDGKTKAKGSGGRTGRAGR
GHITQSLRAGLTFPVSRVARHLKESKLSNRVGKGSAVYLAAVLEYLCAEI
LELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLQGVTIAEGGVLPNIH
AVLLPKKLARKVAEGE*
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mRNA from alignment at S-dermatodea_contig10167:1293..4647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10167.124.1 ID=mRNA_S-dermatodea_contig10167.124.1|Name=mRNA_S-dermatodea_contig10167.124.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3355bp|location=Sequence derived from alignment at S-dermatodea_contig10167:1293..4647+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCACCAAACGGAAAAACAGCGCCTGCACACCGCCCATCACACGTCAA
CATGTCCTCTGGTGCCCCCATCGCGCGCTCTACAACATTGGCGGCGTCCA
TGCGCTCGCCCGACACCTCATCGCCCCTCAGGTGCGTCAAAATCACCTAT
GCAATAAGCAGACGATCCATTTTCCCTCCCAAAATTGCGCAATAACCAAA
AGCACCTTCGGCAATCCCCGAGGATAGATAGATCGATGTCGGCGGACGCT
TGAGACATGCCGACAGAGCTCTCTACCAGGCCGGAGCCCCGACAGGGCCC
AGTCATGGCAAGCCCATCGAATCTCGTTTTGTTTCGTCTCGGTGAGTGCT
TCAAATCGCCCTTATCCCGCGCATATTTTGTTACTTGTTTTTGCTGAGGA
AAGGCCATCTCATCGGACTGACGGGAAGACCAAGGCCAAGGGCAGCGGCG
GTCGCACCGGAAGAGCGGGGCGTGGCCACATCACGCAGTCGCTGAGGTGA
GCCCGGTCGTCGTGTTGCTTAGGGAGGTCGGTAGCGGTGTTCTTGCTCCT
GCGGCGCCTCGCAAGTTTACTGGCGAGGTTCAAAGTTTACAAATTTAGAC
ACAACGCGCGATTCCATTGTTGGATTGTTGGCCGTAGTGTCTGTTGTTGT
GGACAAATTTGCATCCTCTTGCACCTGCTGTGGGTGCTCAAGAAGAGGTC
CTTTGTGTCCGGTGTCATGCTTGCGCCGACTGGAGATGCAGCAGAGGGCC
CCTTGCGCTTCGCCCACAAGTGCTGACATTCGCTGCGTGCGTAAGAGGTT
ATCCGCACCCTCCGCGGGGAGCGCGGCCTCGCGATTTGCTGTCGGTGCCC
TCTCGTACAACGTACTTTGTGTAATCGTACATAGCATCATAAAACCGAGA
AAGATGAGCTGTGGGCTTGTGCACGTTTGATCTCGCGCTTTGCTGTCGGT
GCCCTCTCGTATCATACAACGTACTTTGTGCAATGGTATGATAGCGTGAG
AAAAGTGAGCTTTGGGCTCGTGCGCGTTTGGAGTGCTGTTTGTGGCAGGT
TGATGTTTTTGAGTTTGGTTTGTTTTTTCGGACGATATGATACTTTCACC
AACGTTTTCAAATCATCGGGACGGATACCGCAGTTCTCTCAGCCAGCAGG
TCAGTAAATAAGTAGAGCTAGCTGCACATAAAGCGCTATTGTAGAGCTCT
AAAAAGTGCGCTATCAACATGCGAGCTTATAACTGGCTTTACTGGTGTCA
TAGTATATATTTCATGCGTATGATAGTTATGAAATCATCGCTCGTCTCTC
ACAAACAAAGGCATGGAGTAACTCCGGCCCTGTCCGTTGCAATCGACGCG
ATGTGAGAAAGTCAACGTATCACATCAGCTGAGGACTCGCTGTGTCGGGC
TCTATGAATAACTGCTGCTGTAAAGCTCCAAAATAAGAGCCTCTCCTTGT
ATGCAAGTACCTGTATTCTGTATTGTAGTTTCGTCGGATCGTCTCATACG
ATTTCTCAGGCATATAATGTCATGGACCATTTTTTTACCCCACACCCGTG
CGGCCGTGGTTTGTGCTTCCTCGCGTCGCCAGGGCTGGCCTTACGTTCCC
AGTCTCCCGTGTCGCAAGGCACCTGAAAGAGGTGAGTTCACTTTGCACGA
CGCAGTTAATATTTTTTGTAAAGAATCAGAACACAGAAAGTGCACAATAC
CTGTACATAACTCATCGCGACAGGACCCACGTGGACTTTTGTTATACAAA
AACTGAGATAATTTCACGTCCGCCCGAAAGAGAATTATCCTTAGCAGAAC
ATGGTCCAGGCGACTATAATAGACTTGCAAATACTTGGCTCAGCAGAACG
TACCCCGACGAACCGTCAGTCACGATTCTGCGCGCGTTATTATATGGAGT
GACGTTCGGCGCTGGAGATGAGCGCGGCCTGACCTGTACTCTAAATATGC
TTATGAATATTTAAACGCAAAAATGTTTCCCGAGAACAGGTGGACTTTAG
CCGTCGACGTCAAAGATAATCTCGGAGTGAACGGCGTAGCTTGGCGCGGC
GTGCTCATTATTCCTCCCCGCTGTCTGTCCTTCCCCGTGTTGAAATGTTT
GGACGCCCGATTTTTGCTGTGACAACAACAGTCGAAGCTCAGCAACCGAG
TCGGCAAAGGCAGTGCCGTCTACCTGGCTGCGGTTCTCGAGGTATGGCTG
GCTATGCACCGCCGTACCCGGCACTATATAGAAATAATTGCTACCTACCA
ATACTCTACATGGTGTGCCGAAAGATTTACAGCACGAGATTTATCTGACT
GAGAGTCACTGGTAGTCTCAAGTCTCAAGAGCATTGCATGTAACGGCTTT
CCGCTTTGAACGGGAACGAACTCAGAGTTACGCTGGCAGGGTTGGTTGTA
CTGTCTGCTGCCGACCGCTGGCTTGCCGACCGCTGGCTTTCATGGTCTTC
TGTTCCTCGTGCGTCTCGCCTCCAATAGCTGCAAATATACGTTACGTTAG
CCAGGCAGGGAGATCAACACTCTCTTGTGTGCGCTATTAACAGGCTAGAG
CTCTAGGCATTTATGCATGGGTGGCCCCCCAGAGCGGCATCGATCTTTAG
CAAAATCGTTTTTGAATTCCCCCCCCCTCGCGTCTCTCTCTTCCCTTCTT
GCCTCTGCCGAAAAACAGTACCTATGCGCCGAGATCCTGGAGCTGGCCGG
AAACGCGTGCCGCGACAACAAGAAGAAGCGCATCACCCCTCGCCACATCC
AGCTAGCCATCCGTAACGACGAAGAGCTGAACAAGTTGCTGCAGGGCGTG
ACCATCGCCGAGGGCGGCGTGCTCCCCAACATCCACGCGGTGCTTCTGCC
CAAAAAACTCGCTAGGAAGGTCGCCGAGGGGGAGTAAGGCTCGAGCTAGT
GTTAGTCGTGGCGGAAGCAGCCCCGCCCAAGAGTCGAAGGAGTTGGAGGA
GGCGTGTTTGGTCGTTCCGTGGGAGCGGTTTCGCCTTACCTTGCAAAATT
AGCGAGCACGAGGAGTCCGGCCTCGTCCGGCATAGTACATATATACATAC
CTGGGAATACGTATGTATATTTTCGTATTTCATTTTGCGTTATTTTGCTA
ATAGTAGTAATTACCATGAGCAGCTGCGTTCTTTCGCGATCCTTTTTCGA
TAGCCGCGTGTGCCTGTGCGCTTCGCTGTGAAAGTTTAATTTGGTCCTCG
AGAGAAGCTGCGCGCGCGCTTTCACATATTTTGCTTTAGGCAATGCTCTG
CCGTAATCTTTGTGATTGGCGGGCGCGATGGTGACTTAAAATTACGTCGT
CATTGGACCCATGGCAGTGTGTAAGCCCTGGTATCTCGGTGGTGGGAGTC
GAAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10167:1293..4647+

>mRNA_S-dermatodea_contig10167.124.1 ID=mRNA_S-dermatodea_contig10167.124.1|Name=mRNA_S-dermatodea_contig10167.124.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at S-dermatodea_contig10167:1293..4647+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCTCTGGTGCCCCCATCGCGCGCTCTACAACATTGGCGGCGTCCAT
GCGCTCGCCCGACACCTCATCGCCCCTCAGATGTCCTCTGGTGCCCCCAT
CGCGCGCTCTACAACATTGGCGGCGTCCATGCGCTCGCCCGACACCTCAT
CGCCCCTCAGGCCATCTCATCGGACTGACGGGAAGACCAAGGCCAAGGGC
AGCGGCGGTCGCACCGGAAGAGCGGGGCGTGGCCACATCACGCAGTCGCT
GAGGCCATCTCATCGGACTGACGGGAAGACCAAGGCCAAGGGCAGCGGCG
GTCGCACCGGAAGAGCGGGGCGTGGCCACATCACGCAGTCGCTGAGGGCT
GGCCTTACGTTCCCAGTCTCCCGTGTCGCAAGGCACCTGAAAGAGGGCTG
GCCTTACGTTCCCAGTCTCCCGTGTCGCAAGGCACCTGAAAGAGTCGAAG
CTCAGCAACCGAGTCGGCAAAGGCAGTGCCGTCTACCTGGCTGCGGTTCT
CGAGTCGAAGCTCAGCAACCGAGTCGGCAAAGGCAGTGCCGTCTACCTGG
CTGCGGTTCTCGAGTACCTATGCGCCGAGATCCTGGAGCTGGCCGGAAAC
GCGTGCCGCGACAACAAGAAGAAGCGCATCACCCCTCGCCACATCCAGCT
AGCCATCCGTAACGACGAAGAGCTGAACAAGTTGCTGCAGGGCGTGACCA
TCGCCGAGGGCGGCGTGCTCCCCAACATCCACGCGGTGCTTCTGCCCAAA
AAACTCGCTAGGAAGGTCGCCGAGGGGGAGTAATACCTATGCGCCGAGAT
CCTGGAGCTGGCCGGAAACGCGTGCCGCGACAACAAGAAGAAGCGCATCA
CCCCTCGCCACATCCAGCTAGCCATCCGTAACGACGAAGAGCTGAACAAG
TTGCTGCAGGGCGTGACCATCGCCGAGGGCGGCGTGCTCCCCAACATCCA
CGCGGTGCTTCTGCCCAAAAAACTCGCTAGGAAGGTCGCCGAGGGGGAGT
AA
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