mRNA_S-dermatodea_contig10142.104.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10142.104.1
Unique NamemRNA_S-dermatodea_contig10142.104.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10142.104.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.390e-32
Identity = 73/172 (42.44%), Postives = 92/172 (53.49%), Query Frame = 1 
Query:    1 ELSRGVEATLIVPTLV-VGKKKRRVLLYTEDNGESISWMETGTGRPANPYKVSCNTLLEVKEKSLLGVGAXXXXXXXXXXXXXXXXXCGQPARGKGAXXXXXXXXXXXASRSGGVSD----------LRIKLRWRPKPTWSVRKVTIVDVRCARPGVFARGMMQLRDHNTDL 483
            +LSRGVEATL+ P    + KK+R V+LYTEDNGESI W++TG      PY++ C TLLEV++KS  G  A                  G+    +GA           A   GG S           +RI L+W P+PTWS R V +VDV+ A PG+F RGM QL   NTDL
Sbjct:   14 QLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVRDKSGAGSSAESPATVAGSG--------GELHEVEGAFGSEWGEQKEDAGGVGGTSSGYGTAAAAAGVRINLKWLPQPTWSRRTVKLVDVQTACPGMFTRGMQQLLSFNTDL 177
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BLAST of mRNA_S-dermatodea_contig10142.104.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.280e-29
Identity = 84/166 (50.60%), Postives = 101/166 (60.84%), Query Frame = 1 
Query:    1 ELSRGVEATLIVPTLV-VGKKKRRVLLYTEDNGESISWMETGTGRPANPYKVSCNTLLEVKEKSLLGVGAXXXXXXXXXXXXXXXXX---CG-QPARGKGAXXXXXXXXXXXASRSGGVSDLRIKLRWRPKPTWSVRKVTIVDVRCARPGVFARGMMQLRDHNTDL 483
            ELSRGVEATL+ P L  + KK+R V+LYTEDNGESI W++TG      PY++   TLLEVK+KS  G  A                    CG Q    +G XXXXXXXXXXX   + GV   RI L+W P+PTWS R V +VDV+ A PG+F RGM QL   N+DL
Sbjct:  181 ELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRSKTLLEVKDKSGAGSRAESVARCGGGAHGVEGAFRSECGEQEEDARGXXXXXXXXXXXXXXXATGV---RINLKWLPQPTWSKRTVKLVDVQTACPGIFTRGMQQLLSFNSDL 343
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10142.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE00_ECTSI2.390e-3242.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTP6_9PHAE2.280e-2950.60Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10142contigS-dermatodea_contig10142:5394..6107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.3982208-CDS-S-dermatodea_contig10142:5393..55781622924141.3982208-CDS-S-dermatodea_contig10142:5393..5578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10142 5394..5578 -
1694079045.844714-CDS-S-dermatodea_contig10142:5393..55781694079045.844714-CDS-S-dermatodea_contig10142:5393..5578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10142 5394..5578 -
1622924141.4093058-CDS-S-dermatodea_contig10142:5800..61071622924141.4093058-CDS-S-dermatodea_contig10142:5800..6107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10142 5801..6107 -
1694079045.8530881-CDS-S-dermatodea_contig10142:5800..61071694079045.8530881-CDS-S-dermatodea_contig10142:5800..6107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10142 5801..6107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10142.104.1prot_S-dermatodea_contig10142.104.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10142 5394..6107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10142.104.1

>prot_S-dermatodea_contig10142.104.1 ID=prot_S-dermatodea_contig10142.104.1|Name=mRNA_S-dermatodea_contig10142.104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp
ELSRGVEATLIVPTLVVGKKKRRVLLYTEDNGESISWMETGTGRPANPYK
VSCNTLLEVKEKSLLGVGAAAASSAAAAAAAAAGGGCGQPARGKGAGGAG
QTDSGDGASRSGGVSDLRIKLRWRPKPTWSVRKVTIVDVRCARPGVFARG
MMQLRDHNTDLML*
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mRNA from alignment at S-dermatodea_contig10142:5394..6107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10142.104.1 ID=mRNA_S-dermatodea_contig10142.104.1|Name=mRNA_S-dermatodea_contig10142.104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig10142:5394..6107- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCTCAGCCGCGGCGTGGAGGCTACCCTGATCGTGCCGACCTTGGTCGT
GGGGAAGAAGAAACGCCGCGTGCTCCTCTACACAGAGGACAATGGCGAGT
CCATCTCGTGGATGGAGACTGGCACTGGACGACCCGCGAACCCTTACAAG
GTCTCCTGCAACACCCTGCTGGAAGTCAAGGAGAAGAGTCTGCTCGGCGT
CGGCGCTGCTGCCGCTTCTTCTGCTGCTGCCGCTGCTGCCGCTGCTGCTG
GCGGTGGCTGTGGCCAGCCAGCACGGGGGAAGGGGGCGGGGGGCGCGGGA
CAAACTGGTCCGTTTGCGGCAAAAAATAAAAGTGTACGGGATGATTATCC
GTCGATCTCTGCCAACGACTCGGGCGTTGGAGAGAGCGGCAAGTCTGCTT
CGGACGGCAGCGTAGCTACTACAAAGCAGCAGCCGCGGCGTGGGGAATCG
TCGGGAGGTGGGGAGGAGCGTCGCCTGCCGGTGTCGACGAGGGGGTCGCC
TCGGTGCGGTGGCCGAGAGGCTTTGGGAGACAGCGGTGATGGTGCTTCGA
GGTCGGGGGGCGTGTCTGATTTGAGGATCAAGCTGAGATGGAGACCAAAG
CCGACCTGGTCGGTCAGGAAGGTGACCATCGTTGATGTGCGCTGTGCGAG
ACCAGGGGTGTTCGCGAGGGGCATGATGCAGCTCCGCGATCACAACACGG
ACCTCATGTTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10142:5394..6107-

>mRNA_S-dermatodea_contig10142.104.1 ID=mRNA_S-dermatodea_contig10142.104.1|Name=mRNA_S-dermatodea_contig10142.104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig10142:5394..6107- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCTCAGCCGCGGCGTGGAGGCTACCCTGATCGTGCCGACCTTGGTCGT
GGGGAAGAAGAAACGCCGCGTGCTCCTCTACACAGAGGACAATGGCGAGT
CCATCTCGTGGATGGAGACTGGCACTGGACGACCCGCGAACCCTTACAAG
GTCTCCTGCAACACCCTGCTGGAAGTCAAGGAGAAGAGTCTGCTCGGCGT
CGGCGCTGCTGCCGCTTCTTCTGCTGCTGCCGCTGCTGCCGCTGCTGCTG
GCGGTGGCTGTGGCCAGCCAGCACGGGGGAAGGGGGCGGGGGGCGCGGGA
CAAACTGGAGCTCAGCCGCGGCGTGGAGGCTACCCTGATCGTGCCGACCT
TGGTCGTGGGGAAGAAGAAACGCCGCGTGCTCCTCTACACAGAGGACAAT
GGCGAGTCCATCTCGTGGATGGAGACTGGCACTGGACGACCCGCGAACCC
TTACAAGGTCTCCTGCAACACCCTGCTGGAAGTCAAGGAGAAGAGTCTGC
TCGGCGTCGGCGCTGCTGCCGCTTCTTCTGCTGCTGCCGCTGCTGCCGCT
GCTGCTGGCGGTGGCTGTGGCCAGCCAGCACGGGGGAAGGGGGCGGGGGG
CGCGGGACAAACTGACAGCGGTGATGGTGCTTCGAGGTCGGGGGGCGTGT
CTGATTTGAGGATCAAGCTGAGATGGAGACCAAAGCCGACCTGGTCGGTC
AGGAAGGTGACCATCGTTGATGTGCGCTGTGCGAGACCAGGGGTGTTCGC
GAGGGGCATGATGCAGCTCCGCGATCACAACACGGACCTCATGTTGTGAA
CAGCGGTGATGGTGCTTCGAGGTCGGGGGGCGTGTCTGATTTGAGGATCA
AGCTGAGATGGAGACCAAAGCCGACCTGGTCGGTCAGGAAGGTGACCATC
GTTGATGTGCGCTGTGCGAGACCAGGGGTGTTCGCGAGGGGCATGATGCA
GCTCCGCGATCACAACACGGACCTCATGTTGTGA
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