mRNA_S-dermatodea_contig1014.99.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1014.99.1
Unique NamemRNA_S-dermatodea_contig1014.99.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A6H5L0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V0_9PHAE)

HSP 1 Score: 324 bits (831), Expect = 4.260e-104
Identity = 185/285 (64.91%), Postives = 198/285 (69.47%), Query Frame = 1 
Query:   10 PQSSCRTMTLRTSRAAVAFILLASWSSQPCLGFVGTACSLSAQTRGRYASTLAAPSRSSSTLSARRAGSGCYGAGFRRRRASPASVTSMVAAPTELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGE---GWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSKG-GDGGETA 852
            P   C  + +R  R   A  LLA WS Q C GFV   CS     R    S +          S RR+G                 VT M AAPTELWDSYL ALE APLLTKSITAG IFPAADA AQ FD+  +  GE     D ARTLRWLFFGF VQAPWNH FYV LDGALPPT DPLSTTTA+KV IDQFVQAP+FT++IFGVLGLLEGK  ADIREQLDQDYKSTML NWGVFVPA+VVNLAFCPPELRVLFLNVVFFGWTIFLST+VSKG G+  E A
Sbjct:   13 PSLGCTMLLIR--RFITACTLLACWSCQRCSGFV---CS---PLRSALLSPVGMKQHKHDNRSIRRSG-----------------VTRMAAAPTELWDSYLHALETAPLLTKSITAGCIFPAADAVAQRFDTKGQDDGEVQQQLDIARTLRWLFFGFAVQAPWNHFFYVFLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 272
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: D7FP55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP55_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 5.670e-103
Identity = 159/197 (80.71%), Postives = 172/197 (87.31%), Query Frame = 1 
Query:  274 MVAAPTELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGE---GWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSKG-GDGGETA 852
            M AAPTELWDSYL ALE APLLTKSITAG IFPAAD+ AQ+FD+  +  GE    WD ARTLRWLFFGF VQAPWNH FYV+LDGALPPT DPLSTTTA+KV IDQFVQAP+FT++IFGVLGLLEGK  ADIREQL+QDYKSTML NWGVFVPA+VVNLAFCPPELRVLFLNVVFFGWTIFLST+VSKG G+  E A
Sbjct:    1 MAAAPTELWDSYLHALETAPLLTKSITAGCIFPAADSVAQWFDNKGQDDGELQQQWDIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLNQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEEA 197
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: K0R1J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1J6_THAOC)

HSP 1 Score: 233 bits (594), Expect = 5.780e-69
Identity = 111/180 (61.67%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:  298 WDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGEGWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSKGGD 837
            W+SYL ALEA PLL KS+TAGVI  AAD   Q   S       G D AR  R+ FFGF++QAPWNH +Y++LDGALPPT DP + TT +KV IDQFVQAP+FT+IIF  LG LEGKT+ +I++QLD DYK TM+ NW ++VPA+ VN+AFCPP LRVLFLN VFF W+IFLS  ++K  D
Sbjct:   75 WESYLDALEADPLLVKSVTAGVILGAADLAGQAIQSTNDEDSGGVDIARFARFAFFGFILQAPWNHAYYLLLDGALPPTEDPFTATTGVKVLIDQFVQAPIFTVIIFAFLGFLEGKTSEEIKQQLDDDYKDTMIANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNKAED 254
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: B8BXV6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV6_THAPS)

HSP 1 Score: 228 bits (582), Expect = 4.000e-68
Identity = 112/188 (59.57%), Postives = 138/188 (73.40%), Query Frame = 1 
Query:  292 ELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFF---------DSARKASGEGWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSK 828
            E+W SYL ALE+ PLL KS+TAGVI  AAD + Q           D A   +  G D AR LR+ FFGF++QAPWNH +Y++LDGALPPT DP + TT IKV +DQF+QAP+FT+IIF  LG LEGKT  +I++QLD DY  TML NW ++VPA+ VN+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:    4 EVWTSYLNALESDPLLVKSVTAGVILGAADLSGQAIQQSLAKANSDDATTITDSGVDIARFLRFAFFGFILQAPWNHFYYLLLDGALPPTPDPFTATTGIKVLVDQFIQAPIFTVIIFAFLGFLEGKTVEEIKKQLDDDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 191
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A7S3PZB9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZB9_9STRA)

HSP 1 Score: 230 bits (586), Expect = 8.460e-68
Identity = 112/180 (62.22%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:  298 WDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGEGWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSKGGD 837
            W SY  ALE  PLLTKSITAGVI  AAD   Q  + +        D+AR  R+ FFGF++QAPWNH +Y+ LDGALPPT DPLS TT IKV IDQFVQAP+FT+IIF  LGLLEGK+ +D++EQLD+DYK TM  NW ++VPA+ VN+AFCPP LRVLFLN VFF W+IFLS  ++  G+
Sbjct:   75 WTSYNIALEEDPLLTKSITAGVILGAADFAGQALERSNSGEDNPVDYARAARFAFFGFILQAPWNHFYYLFLDGALPPTEDPLSATTGIKVVIDQFVQAPIFTVIIFFFLGLLEGKSASDVKEQLDRDYKDTMFANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNSDGE 254
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A7S2W2E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2E8_9STRA)

HSP 1 Score: 229 bits (584), Expect = 9.390e-68
Identity = 115/183 (62.84%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:  289 TELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGE---GWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSK 828
            TE W SY  ALE  PLLTKSITAGVI  AAD   Q  + ++K  GE     D AR +R+ FFG V+QAPWNH +Y +LDGALPPT DP +TTT IKV IDQFVQAPVFT++IF  LGLLEGKT   +++QLD DYK TM+ NW ++VPA+ VN+AFCPP LRVLFLN VFF W+IFLS  ++K
Sbjct:   54 TEAWVSYNHALETDPLLTKSITAGVILGAADLAGQALERSQKKEGEESSSVDLARAVRFAFFGLVLQAPWNHFYYQLLDGALPPTADPFTTTTGIKVAIDQFVQAPVFTVLIFYFLGLLEGKTMESVKQQLDNDYKDTMIANWKLWVPATAVNIAFCPPLLRVLFLNCVFFFWSIFLSLKLNK 236
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A7S1YNW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YNW0_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.280e-67
Identity = 116/193 (60.10%), Postives = 141/193 (73.06%), Query Frame = 1 
Query:  289 TELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGE-------------GWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSK 828
            TE W+SYL ALEA PLL KSITAGVI  AAD + Q    A   + +               D AR LR+ FFGF++QAPWNH +Y +LDGALPPT DP ++TTAIKV IDQF+QAP+FT+IIFG LG+LEGK+   I+EQLD+DY  TML NW ++VPA+ VN+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:   79 TEAWNSYLDALEANPLLVKSITAGVILGAADLSGQALQQAIATNNDDNMELSTNNNNSNSVDIARFLRFAFFGFILQAPWNHFYYQILDGALPPTEDPFTSTTAIKVIIDQFIQAPIFTVIIFGFLGVLEGKSLDSIKEQLDEDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 271
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A7R9W596_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W596_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.400e-66
Identity = 114/189 (60.32%), Postives = 141/189 (74.60%), Query Frame = 1 
Query:  289 TELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGEGW-DFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSKGGDGGETA 852
            T  W +Y  ALEA PL+TKSITAGVI  +AD   Q  + A K   EG  D AR  R+  FG V+QAPWNH +Y++LDG LPPT++P +TTT +KV IDQFVQAP+FT++IF  LGLLEGKTT  I+ QLD+DYK TML NW ++VPA+VVN+AFCPP LRVLFLNVVFF W+IFLS  ++K  +  + A
Sbjct:   74 TGAWAAYNDALEANPLVTKSITAGVILGSADFAGQAIERATKEDSEGSVDLARAARFAVFGLVLQAPWNHFYYLLLDGVLPPTVEPWTTTTGVKVVIDQFVQAPIFTVLIFIFLGLLEGKTTDAIKSQLDEDYKDTMLANWKLWVPATVVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNKNEEPSQQA 262
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A7S0BVQ8_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVQ8_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.230e-66
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = 1 
Query:  262 SVTSMVAAPTELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARKASGE--GWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSK 828
            SV ++  + ++LW SY  ALE  PL+TKSITAGVI  AAD   Q  ++  K S E    DF R  R+ FFGF++QAPWNH +Y++LDGALPPT DPL+ TT IKV IDQFVQAP+FT+IIF  LGLLEGK    I +QL+ DYK+TM+ NW ++VPA+ VN+AFCPP  RVLFLN VFF W+I+LS  ++K
Sbjct:   72 SVITIATSASDLWTSYNSALETDPLITKSITAGVILGAADFAGQALEAKTKESSEETSIDFGRAARFAFFGFILQAPWNHFYYLLLDGALPPTDDPLTATTGIKVVIDQFVQAPIFTVIIFVFLGLLEGKNIESINKQLENDYKNTMVANWKLWVPATAVNIAFCPPLFRVLFLNCVFFFWSIYLSLTLNK 262
[Close]
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Match: A0A7S4EG90_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG90_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.980e-66
Identity = 109/197 (55.33%), Postives = 144/197 (73.10%), Query Frame = 1 
Query:  262 SVTSMVAAPTELWDSYLGALEAAPLLTKSITAGVIFPAADATAQFFDSARK-----ASGEGWDFARTLRWLFFGFVVQAPWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLGLLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLNVVFFGWTIFLSTIVSKGGD 837
            S +S+   P + W +Y  ALE +PLL KS+TAGVI  AAD   Q F+ A+      ++  G D ART+R+ FFGF++QAPWNH +Y +LDGA+PPT+DP ++TTA+K  IDQFVQAP+FT++IF  LG LEGK    I++QLD DY  TM+ NW ++VPA+V+NLAF PP LRVL+LN VFF W+IFLS  ++K GD
Sbjct:   31 SSSSLHMDPQQAWTAYNDALETSPLLVKSVTAGVILGAADLAGQAFEGAQSDDESSSNDTGIDVARTVRFAFFGFILQAPWNHFYYTLLDGAIPPTVDPWTSTTAVKTVIDQFVQAPIFTVLIFAFLGFLEGKNLEAIKKQLDDDYADTMVANWKLWVPATVINLAFVPPILRVLYLNCVFFFWSIFLSLKLNKDGD 227
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1014.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0V0_9PHAE4.260e-10464.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP55_ECTSI5.670e-10380.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0R1J6_THAOC5.780e-6961.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BXV6_THAPS4.000e-6859.57Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S3PZB9_9STRA8.460e-6862.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2W2E8_9STRA9.390e-6862.84Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1YNW0_9STRA1.280e-6760.10Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9W596_9STRA1.400e-6660.32Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0BVQ8_9STRA2.230e-6658.64Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S4EG90_9STRA5.980e-6655.33Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1014contigS-dermatodea_contig1014:2157..7182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.9
Seed ortholog evalue2.3e-84
Seed eggNOG ortholog2880.D7FP55
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030154,GO:0032502,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043473,GO:0044424,GO:0044444,GO:0044464,GO:0048066,GO:0048869,GO:0050896,GO:0050931,GO:0050935,GO:0051716,GO:0070887,GO:1901700,GO:1901701
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-10_002560.1
Exons5
Model size1785
Cds size834
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.0412705-UTR-S-dermatodea_contig1014:2156..21861622924141.0412705-UTR-S-dermatodea_contig1014:2156..2186Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 2157..2186 +
1694079045.532609-UTR-S-dermatodea_contig1014:2156..21861694079045.532609-UTR-S-dermatodea_contig1014:2156..2186Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 2157..2186 +
1622924141.0987844-UTR-S-dermatodea_contig1014:6261..71821622924141.0987844-UTR-S-dermatodea_contig1014:6261..7182Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 6262..7182 +
1694079045.613828-UTR-S-dermatodea_contig1014:6261..71821694079045.613828-UTR-S-dermatodea_contig1014:6261..7182Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 6262..7182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.0507154-CDS-S-dermatodea_contig1014:2186..25011622924141.0507154-CDS-S-dermatodea_contig1014:2186..2501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 2187..2501 +
1694079045.5452385-CDS-S-dermatodea_contig1014:2186..25011694079045.5452385-CDS-S-dermatodea_contig1014:2186..2501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 2187..2501 +
1622924141.0588846-CDS-S-dermatodea_contig1014:4080..42301622924141.0588846-CDS-S-dermatodea_contig1014:4080..4230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 4081..4230 +
1694079045.5622087-CDS-S-dermatodea_contig1014:4080..42301694079045.5622087-CDS-S-dermatodea_contig1014:4080..4230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 4081..4230 +
1622924141.0712469-CDS-S-dermatodea_contig1014:5095..52211622924141.0712469-CDS-S-dermatodea_contig1014:5095..5221Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 5096..5221 +
1694079045.575879-CDS-S-dermatodea_contig1014:5095..52211694079045.575879-CDS-S-dermatodea_contig1014:5095..5221Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 5096..5221 +
1622924141.0817893-CDS-S-dermatodea_contig1014:5563..57221622924141.0817893-CDS-S-dermatodea_contig1014:5563..5722Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 5564..5722 +
1694079045.5896537-CDS-S-dermatodea_contig1014:5563..57221694079045.5896537-CDS-S-dermatodea_contig1014:5563..5722Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 5564..5722 +
1622924141.089019-CDS-S-dermatodea_contig1014:6177..62611622924141.089019-CDS-S-dermatodea_contig1014:6177..6261Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 6178..6261 +
1694079045.6058109-CDS-S-dermatodea_contig1014:6177..62611694079045.6058109-CDS-S-dermatodea_contig1014:6177..6261Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 6178..6261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1014.99.1prot_S-dermatodea_contig1014.99.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1014 2187..6261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1014.99.1

>prot_S-dermatodea_contig1014.99.1 ID=prot_S-dermatodea_contig1014.99.1|Name=mRNA_S-dermatodea_contig1014.99.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=278bp
MTLRTSRAAVAFILLASWSSQPCLGFVGTACSLSAQTRGRYASTLAAPSR
SSSTLSARRAGSGCYGAGFRRRRASPASVTSMVAAPTELWDSYLGALEAA
PLLTKSITAGVIFPAADATAQFFDSARKASGEGWDFARTLRWLFFGFVVQ
APWNHLFYVVLDGALPPTLDPLSTTTAIKVFIDQFVQAPVFTIIIFGVLG
LLEGKTTADIREQLDQDYKSTMLVNWGVFVPASVVNLAFCPPELRVLFLN
VVFFGWTIFLSTIVSKGGDGGETAGET*
back to top

mRNA from alignment at S-dermatodea_contig1014:2157..7182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1014.99.1 ID=mRNA_S-dermatodea_contig1014.99.1|Name=mRNA_S-dermatodea_contig1014.99.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5026bp|location=Sequence derived from alignment at S-dermatodea_contig1014:2157..7182+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGTCCTGCCACAGTCATCTTGTCGTACCATGACACTGAGAACGAGTAG
AGCCGCGGTAGCCTTTATCCTTCTTGCAAGCTGGTCGTCCCAGCCTTGCT
TGGGATTTGTTGGCACCGCCTGTAGCTTGTCGGCGCAGACACGAGGTCGG
TACGCGAGCACACTAGCAGCACCAAGTCGAAGCAGCAGCACGTTGTCAGC
GCGTCGAGCCGGTTCTGGTTGCTATGGGGCTGGGTTCCGGAGACGTCGGG
CATCGCCTGCGAGCGTGACGAGTATGGTGGCCGCCCCTACTGAGCTGTGG
GACTCGTACCTCGGAGCTCTGGAAGCGGCACCGCTGCTGACGAAGGTGTG
GTTCTCGCTGACGTTGTGTTGGGTACGTGTCAGGCGGTGTGAAAATTGAT
ACAAGTATAGTATAGAACAGAGTTCAGCTGGTCAGAACATTTGAACATGT
GTCGCAACCTATTTGCAATGTTACTGTTTGTACACAGCAGTCCGCATGTA
AGTTGCCGTCACATCATAGTCTTGTGTTCGATCGCTGAAACTATGGATGT
GGCGCACCCGTAGCGAGAAAGCTTGCTCAAAGCAAATCGGTATATACCTC
TCACAAGGCAGCTTGATCCGCACCTAAAAAATGTAATTTTGACAAAACAC
ACGCACGCTCCCAGCTTTTCCAGTTTCCAGCTGTTCTGTTCGAGACTCGA
GACGATCAGAGAGGAAGCAAGGAAGCATAACAGTATTTGTCTTGCTCCTT
CTTCCTCTGTCCGTTCGTGCCCTCGGAACAATTGGGAAACCGTCTCAAAT
GTCAAACGTACCTTGAATACTTGTACATATAGCACCTTGTTTCGGCTTCC
CCTGGAATTAGTGTGTCTGTGAGTTAGGGATGTACTCTACAGACTGCACT
TGCACATGTGAACTATTAATAGTTATATTTTGTTTTTTATAAAACATTGA
TGTGATTGGATTATCATGAGCGAGCAGCGCGTCGCCCGGTAACGCCCATT
CGCTCCGACGGACAAAACTTCGACGGCACTCGCGACGTTATCGTGAATCG
GCCCGCGTGCATGAAGCAGGCACATTGTTTTTGATAAAATGACACATGAA
CTTGGTGCAGTACTGAGCGTCATATCAGTCTTCGCTTCTCTGCTTGGAAT
GTCTACCGCAAATTTTAGCACAATGTATAAAATACAGAATCACTGGTGAG
ATACCCTCCGAGAATTTCTGTTGACCAGCAGCGCATACATACTCTGTGGT
ATACGCGGGGATGAATGATGACTTCACAATTTGAAGATATTATGATTGGT
ATTTTGCTTGCCGGGTGATGTATAAACCCTGCTATGGATCAGTGCCTGTA
CCTTTATTCCCCCCTTGCACCTATACCTTACTGGGAGGGTAAACGTACCT
ACCCTCGGTTTCCCCTGAAACTATTTCAGGTGTAACTGTGAGTCAGGGAA
AGTACGTGTTAAATATTTAGATTTTGTTTTTTGTAGAATTAGTAGATAGT
CACGGCTACTTTATAAGGTGTATGTGCGAATGGGCGAACCGGCGAAAGAT
CCGACACATCTTCAAAATACTGGCACTCTCTGTAAGCCCTACCGATTCAG
CATCAAGAGTTCTGCTCTAAAAGCCCTATGAATACATGTCGATTTGGCAT
CAAGGCTCCACTCTAAATTCTGAATAAAAAAACGTGCAAAGCGCTATTAA
CCCTTTTGGGACTAAGGCTGTTTTCGGGTAACTGCTTGCTATTATGATTT
ACCCTTTTGGGACTAAGCCTTGGGACGAAGCCTGTTTCCGGGTAACTGTT
GGCTACCATAATGGCAAACAGTTCCCCGAAAACAGCCTAGGTCCCAAAAG
GGTTAATTAATCAATATGTCCGGTCTCATTTCGGGTACTTTCCGCCACCT
TTTATCTCCTCGCCATTTCGATAGTCTATCACGGCAGGGGTCATCTTCCC
GGCGGCAGACGCGACGGCGCAGTTTTTCGACAGCGCAAGAAAGGCCAGCG
GTGAGGGGTGGGACTTCGCCCGGACGCTGCGTTGGCTGTTCTTCGGCTTT
GTGGTGCAGGCGCCGTGGAACCACGTGAGAGCTCGATGAGCAGCAGTTTG
GGGGCTGAACTCAGACGTTGTTGGTAAGGCTGCCGTCTGGCCCCGCCGCC
TTTGCAACGGGCACTTCTGAATGGAAAGGATAAGGATACACTCAGATCTT
ACCGTACCTGGCCGTGAAGTGATGGCTGAAAATTGTGTGGAGTCCCGGAC
TTTGTGTAGTCACATGTCACTCACGTTCCTGTATATTCAGTACATATACA
CACTCCATCAAAAGGCGAGGGAGCATTGTTTGAGTCCGACTTTGTTTTTC
TCTATATCTGGGGTGCTATTTCTTATTTCTTGTACCATAGTAAGTACCAG
GGGCGGTACGGTGTATAAGTCGGGTCGGATTATGCCGATCGGCTATACGT
GTGCAAATCAAATCAAATCAAATCAAATCAAAAATCAAAACTACCTCACC
AACCAATGCCACCAGAATAAAGGCGTCGTTGGCGCGCCGACCGTGTTTCT
TTTCACTCCTGTAAATTAATTATTTGTGGGCGAGATCGCCATCCGCGTGC
CGGCCTTTCCTGCTGCGAAAGCCACAACACCTGTCTCTCTCTCTCTCTCT
CGCCTTCGCGACGTCAAAAAAAGCGCAAAATTACAAGCGCACCCCCCTCC
ACCGTCGGCACCACGTTGCGGGCATTGTTTCAAATCGCGACGGGCAGCAA
TTGCGGCGACTTTATTACATTTCTCCCGTTGATTCCGCACCACCACCAGG
GAGTGGGAAAAGTCGAAAATACGCCGAGACATTGTGTCCACGCTGCACTG
TCCGGGGAGAGTTGCACGACCGACCCAACCCCGCTTCCCTCCGCCCCCTG
CCCCCAATGCCGTCGCACCCCGCGGACATATGATACCAGTTATTTTATGT
TGTGCTGGACGGAGCGCTACCCCCGACCCTGGACCCTTTATCGACGACGA
CCGCGATCAAGGTTTTCATTGATCAGTTCGTCCAAGCGCCCGTCTTCACG
ATCATCATTTTCGGGGTGAGTGTTCGTTCTACCGATGACCACTCTCTTGC
GTATCTTGTTTGCCCGCAGCTATGTAGGCGGGACGCCGCTTTTCTGCCCG
AACTCGTGACGCCCATCACGAAAGAGAGAAACCAGGATCGGAGCACCCGA
CACGCTCACAATCACCACGGCGGCTGCAACCGACGAGTCCGCTATGGCCC
CGTGCTCGCGGCACGTCACCGCTGTACCGATGTCGTTTAGAGGTTGCCAT
AGGGCCCGTCGACATTTGAGGGAAGCGCGCTGCTGTAATGGAGCGTGTTT
TTTCACGATTGCTTGTGCGTTTTAATATTATTGCACCTGCCCTCTGTCGC
ACGGAAGGTCCTCGGTCTCTTGGAGGGCAAGACGACGGCGGACATCCGCG
AGCAGCTGGATCAGGACTACAAGAGCACCATGCTCGTCAACTGGGGCGTC
TTCGTCCCGGCGTCAGTGGTCAACCTGGCCTTCTGCCCCCCAGAGCTCCG
CGTTCTTTTTCTCAACGTGCGTGAGAGAGAAGCGTGCGTTGTGGCCGTAT
ATACATTCGCACCATATTTGTATTGTAGTTACGGCTTGACTGTGGTACCT
ATGTCACAGTTTACGCCGTGATGTTTGGAAAATTGAGCTTTCAAAACGCC
TCCTTACGAAGAAGATCGTGCTGGAGCTTCTAGCCTATTATAGTATCCCG
CGCCGGTTAACATGTGAAGCCCCTCTGCGCTCGTGCTGGCTGCTCGGTAA
ACCGAGAACGGCCTTTAGGTCGACCGAACGGCCCTCTGGTGGTGCCAATG
CTCGGTTGTTCGCCAGACAGTTGTAGTACCACGTGTCCTGTCTCCATCTT
CCCTACACCTATCAGAGCGTGCGTTGTAGCGTAGACGGCGCCATAATGTT
AACTGTTTTCTTCTCGCGCGCGTGTTTCGTTATTGTTCTTTGCCCGACCG
GATTGGTCGCCGTTTTCACAGGTTGTGTTCTTCGGGTGGACGATATTCCT
GAGCACCATAGTTAGCAAAGGGGGAGATGGGGGAGAGACGGCCGGCGAGA
CCTGAGAGGCATTCTCGCCGACCGAATTATAATTTTAGCGCCACACGGCA
GTTGCTTCGCACGAGGGATGAGAGGCGAGGCTGTATAGCGAGGCTTAGTC
GTGGACAATGGCACGTGCTCCAGGAGCCTAGTCTGGAATTAGAGTTGTTG
TCGTCTGCGTTGTTCGTGCTGCTGCTCGGCACCGACACTATATTTCTTAT
TTTACGGTAGGTTTTGTACATGAACGAGTGGGAATCGAGACTCTGTCTCC
ATTTCTCTACGAATACGATAATAAAAAGGTATCACGGAACGTTTGGCGAC
GGGGCGAGAATACTCCAGTCCAGATCGTAGATAGCTAAATTCGATGTAAA
GAGCGCCCGTGATGTAGCCAGCGTACGGAATCGCGAGCGTACATGGCAAT
TGGCGGGCTGTTTTTGCCTGCGGTGTTGCACGAAGCGAGGTCGACGAGTA
CGACGTGCTGTTGCTTCTTGTAAGGTCTACGAATAGTACAGTATTAGTAG
TATAATTGTAACCAGAAAACACGCAAGATGTTAATTGAACGGCAACGCGC
AGCAAATTTAAAGGACCACTCGGGCACCTGGTTTGTTGAGAAATCGCACA
AGACACATCGGGCATATGATGCTGGAAAGGCGACTTAATTGGTGAGCTTT
TCTATTGTAGTGTTTCTTGCCGAGTACGCCGGACAACAGGATTGTTTTCC
AACTCGGCGTCGTGGTGCAGCATTTCGTCCATTGCCCCTCCCCATTGAAG
CCGTTGAAATTATTGTTTTCAAATAATTCTTCACGAGAATGGGACCACGA
AGAATATTAATATTGATATCTTGCCCCTTCTTCTCCCGGGAAAAGCCTTC
GCCCTCTCCGCTGGGGGAAAACCATGCACACCCCAAAGTTCCGAGGAGGC
TTTCGGCTCGAGGTTGGGGAGCGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1014:2157..7182+

>mRNA_S-dermatodea_contig1014.99.1 ID=mRNA_S-dermatodea_contig1014.99.1|Name=mRNA_S-dermatodea_contig1014.99.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at S-dermatodea_contig1014:2157..7182+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACACTGAGAACGAGTAGAGCCGCGGTAGCCTTTATCCTTCTTGCAAG
CTGGTCGTCCCAGCCTTGCTTGGGATTTGTTGGCACCGCCTGTAGCTTGT
CGGCGCAGACACGAGGTCGGTACGCGAGCACACTAGCAGCACCAAGTCGA
AGCAGCAGCACGTTGTCAGCGCGTCGAGCCGGTTCTGGTTGCTATGGGGC
TGGGTTCCGGAGACGTCGGGCATCGCCTGCGAGCGTGACGAGTATGGTGG
CCGCCCCTACTGAGCTGTGGGACTCGTACCTCGGAGCTCTGGAAGCGGCA
CCGCTGCTGACGAAGATGACACTGAGAACGAGTAGAGCCGCGGTAGCCTT
TATCCTTCTTGCAAGCTGGTCGTCCCAGCCTTGCTTGGGATTTGTTGGCA
CCGCCTGTAGCTTGTCGGCGCAGACACGAGGTCGGTACGCGAGCACACTA
GCAGCACCAAGTCGAAGCAGCAGCACGTTGTCAGCGCGTCGAGCCGGTTC
TGGTTGCTATGGGGCTGGGTTCCGGAGACGTCGGGCATCGCCTGCGAGCG
TGACGAGTATGGTGGCCGCCCCTACTGAGCTGTGGGACTCGTACCTCGGA
GCTCTGGAAGCGGCACCGCTGCTGACGAAGTCTATCACGGCAGGGGTCAT
CTTCCCGGCGGCAGACGCGACGGCGCAGTTTTTCGACAGCGCAAGAAAGG
CCAGCGGTGAGGGGTGGGACTTCGCCCGGACGCTGCGTTGGCTGTTCTTC
GGCTTTGTGGTGCAGGCGCCGTGGAACCACTCTATCACGGCAGGGGTCAT
CTTCCCGGCGGCAGACGCGACGGCGCAGTTTTTCGACAGCGCAAGAAAGG
CCAGCGGTGAGGGGTGGGACTTCGCCCGGACGCTGCGTTGGCTGTTCTTC
GGCTTTGTGGTGCAGGCGCCGTGGAACCACTTATTTTATGTTGTGCTGGA
CGGAGCGCTACCCCCGACCCTGGACCCTTTATCGACGACGACCGCGATCA
AGGTTTTCATTGATCAGTTCGTCCAAGCGCCCGTCTTCACGATCATCATT
TTCGGGTTATTTTATGTTGTGCTGGACGGAGCGCTACCCCCGACCCTGGA
CCCTTTATCGACGACGACCGCGATCAAGGTTTTCATTGATCAGTTCGTCC
AAGCGCCCGTCTTCACGATCATCATTTTCGGGGTCCTCGGTCTCTTGGAG
GGCAAGACGACGGCGGACATCCGCGAGCAGCTGGATCAGGACTACAAGAG
CACCATGCTCGTCAACTGGGGCGTCTTCGTCCCGGCGTCAGTGGTCAACC
TGGCCTTCTGCCCCCCAGAGCTCCGCGTTCTTTTTCTCAACGTCCTCGGT
CTCTTGGAGGGCAAGACGACGGCGGACATCCGCGAGCAGCTGGATCAGGA
CTACAAGAGCACCATGCTCGTCAACTGGGGCGTCTTCGTCCCGGCGTCAG
TGGTCAACCTGGCCTTCTGCCCCCCAGAGCTCCGCGTTCTTTTTCTCAAC
GTTGTGTTCTTCGGGTGGACGATATTCCTGAGCACCATAGTTAGCAAAGG
GGGAGATGGGGGAGAGACGGCCGGCGAGACCTGAGTTGTGTTCTTCGGGT
GGACGATATTCCTGAGCACCATAGTTAGCAAAGGGGGAGATGGGGGAGAG
ACGGCCGGCGAGACCTGA
back to top