mRNA_S-dermatodea_contig1014.101.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1014.101.1
Unique NamemRNA_S-dermatodea_contig1014.101.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: D8LGL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGL2_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.870e-101
Identity = 160/175 (91.43%), Postives = 164/175 (93.71%), Query Frame = 1 
Query:    1 AWCGVDTISCRSRRVAAGGGFRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 525
            +WC V TISCRS  V      RAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSI+GVGRRF+NLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQ IDQKLR+DLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK
Sbjct:   20 SWC-VLTISCRSGSVLLRR-VRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 192
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: A0A6H5KYA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA8_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.970e-95
Identity = 146/152 (96.05%), Postives = 149/152 (98.03%), Query Frame = 1 
Query:   70 MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 525
            MSLVISPEFQHILRILNTNIDGRRKVQYSLTSI+GVGRRF+NLICKKAEVDPNKRAGEMTADEIEKLVAIIQ PRQFKIPDWFLNRQKDWKTG TTQISSQ IDQKLR+DLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK
Sbjct:    1 MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQTPRQFKIPDWFLNRQKDWKTGTTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 152
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: A0A7S2BE88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE88_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.430e-76
Identity = 118/148 (79.73%), Postives = 134/148 (90.54%), Query Frame = 1 
Query:   70 MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAA 513
            MSL+ISP+FQHILRILNTNIDG RKV +SLT+I G+GRRF+NLICKKAEVDPNKRAGE+T DE+EKLVAIIQNP+QFKIP WFLNRQKD+KTG+  Q  S  +  KLREDLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGK +AA
Sbjct:    1 MSLIISPDFQHILRILNTNIDGTRKVMFSLTAITGIGRRFANLICKKAEVDPNKRAGELTQDEVEKLVAIIQNPKQFKIPMWFLNRQKDYKTGRYQQAFSNNLGAKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKTTGRRGKTMAA 148
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: W7TCB7_9STRA (40s ribosomal protein s18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCB7_9STRA)

HSP 1 Score: 247 bits (631), Expect = 3.570e-76
Identity = 115/156 (73.72%), Postives = 138/156 (88.46%), Query Frame = 1 
Query:   58 GFRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 525
            G  AMSL+I+PEFQHILRILNTN+DG R VQY+LTSIKGVGRRF+N++CKKAE+D N+RAGE+T +++E+++AI+ NP+ FKIPDWFLNRQ+DWKT K +Q +S  +D KLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGK V   G+K
Sbjct:   57 GLIAMSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEIDLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATSNVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAGKK 212
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: F0XYV2_AURAN (Uncharacterized protein n=4 Tax=Pelagomonadales TaxID=54409 RepID=F0XYV2_AURAN)

HSP 1 Score: 242 bits (618), Expect = 8.920e-76
Identity = 116/147 (78.91%), Postives = 135/147 (91.84%), Query Frame = 1 
Query:   73 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAA 513
            SLVISP+FQHILR+LNTNIDGRRKV ++LTSI GVGRRFSN++CKKA VD +KRAGE+TADE+EKLVAIIQNP+QFKIP WFLNRQKD+KTGK +Q  +  + QKLREDLERLKKIR+HRG+RHYWG+RVRGQHTK+TGRRGK +AA
Sbjct:    5 SLVISPDFQHILRVLNTNIDGRRKVMFALTSIPGVGRRFSNVVCKKAAVDAHKRAGELTADEVEKLVAIIQNPKQFKIPAWFLNRQKDYKTGKYSQAFANTLQQKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKSTGRRGKTMAA 151
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: A0A836C976_9STRA (Ribosomal protein S13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C976_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.170e-74
Identity = 117/139 (84.17%), Postives = 126/139 (90.65%), Query Frame = 1 
Query:   76 LVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 492
            LV+ P+FQHILRILNTNIDGR KV Y+LT + GVGRRFSNLICKKAEVD  KRAG +TADEIEKLVAIIQNPRQFK+PDWFLNRQ+DWKTGK+ Q  +Q I QKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR
Sbjct:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: A0A7S0SKK9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SKK9_9CHLO)

HSP 1 Score: 239 bits (610), Expect = 5.070e-74
Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 1 
Query:   64 RAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 525
            R MSL++  +FQHILR+LNTN+DGR KV Y+LTSIKG+GRRF+N++CKKAE+D  KRAGE++A E+E L+ I+ NPRQF+IPDWFLNRQKD+K G+  Q+SS A+D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGK V  GG+K
Sbjct:   39 RTMSLIVGDDFQHILRVLNTNVDGRSKVMYALTSIKGIGRRFANVVCKKAEIDMGKRAGELSAAELESLMVIVSNPRQFRIPDWFLNRQKDYKDGRYLQLSSNALDTKLRDDLERLKKIRNHRGLRHYWGIRVRGQHTKTTGRRGKTVGIGGKK 192
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: A0A6P7WE00_IXOSC (40S ribosomal protein S18 n=23 Tax=Arachnida TaxID=6854 RepID=A0A6P7WE00_IXOSC)

HSP 1 Score: 234 bits (598), Expect = 8.730e-73
Identity = 110/152 (72.37%), Postives = 135/152 (88.82%), Query Frame = 1 
Query:   70 MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 525
            MSLVI  +FQHILR+LNTNIDGRRKV ++LT+IKGVGRRFSN++CKKA+VD NKRAGE+T +E+EKL+ I+ NPRQ+KIPDWFLNRQKD K GK +Q++S A++ KLREDLERLKKIR+HRG+RH+WG+RVRGQHTKTTGRRG+ V    +K
Sbjct:    1 MSLVIPDKFQHILRVLNTNIDGRRKVMFALTAIKGVGRRFSNMVCKKADVDLNKRAGELTEEEVEKLITIMSNPRQYKIPDWFLNRQKDIKDGKFSQVTSNALENKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: D2D961_JATCU (S18.A ribosomal protein n=3 Tax=rosids TaxID=71275 RepID=D2D961_JATCU)

HSP 1 Score: 234 bits (596), Expect = 1.690e-72
Identity = 106/146 (72.60%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:   70 MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIV 507
            MSLV + EFQHILR+LNTN+DG++K+ ++LTSIKG+GRRF+N++CKKA+VD NKRAGE++A+E++KL+ I+ NPRQFKIPDWFLNRQKD+K GK +Q+ S A+D KLR+DLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGK V
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAEELDKLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146
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BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Match: A0A7R9GHT5_9CRUS (40S ribosomal protein S18 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GHT5_9CRUS)

HSP 1 Score: 234 bits (597), Expect = 5.530e-72
Identity = 109/167 (65.27%), Postives = 138/167 (82.63%), Query Frame = 1 
Query:   25 SCRSRRVAAGGGFRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGGRK 525
            SC    ++ GG     SL++  +FQHILR++NTNIDG+RKV +++T+IKGVGRR+SNL+CKKA++D NKRAGE++ +E+EK+V I+ NPRQ+KIPDWFLNRQKD K GK +QI S  +D KLREDLERLKKIR+HRG+RHYWG+RVRGQHTKTTGRRGK V    +K
Sbjct:   31 SCTIGFLSGGGSILVRSLIVKEDFQHILRVMNTNIDGKRKVMFAMTAIKGVGRRYSNLVCKKADIDLNKRAGELSEEEVEKVVTIMSNPRQYKIPDWFLNRQKDIKDGKYSQIMSNNLDTKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKK 197
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1014.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGL2_ECTSI1.870e-10191.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYA8_9PHAE2.970e-9596.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BE88_9STRA1.430e-7679.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TCB7_9STRA3.570e-7673.7240s ribosomal protein s18 n=2 Tax=Monodopsidaceae ... [more]
F0XYV2_AURAN8.920e-7678.91Uncharacterized protein n=4 Tax=Pelagomonadales Ta... [more]
A0A836C976_9STRA2.170e-7484.17Ribosomal protein S13 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S0SKK9_9CHLO5.070e-7470.78Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A6P7WE00_IXOSC8.730e-7372.3740S ribosomal protein S18 n=23 Tax=Arachnida TaxID... [more]
D2D961_JATCU1.690e-7272.60S18.A ribosomal protein n=3 Tax=rosids TaxID=71275... [more]
A0A7R9GHT5_9CRUS5.530e-7265.2740S ribosomal protein S18 n=1 Tax=Notodromas monac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1014contigS-dermatodea_contig1014:14699..21206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue6.1e-79
Seed eggNOG ortholog2880.D8LGL2
Preferred nameRPS18
KEGG koko:K02964
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022613,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0099@1,KOG3311@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description30s ribosomal protein S13, C-terminal
Ec32 orthologEc-10_002620.1
Exons5
Model size1327
Cds size459
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.2475781-UTR-S-dermatodea_contig1014:14698..154971622924141.2475781-UTR-S-dermatodea_contig1014:14698..15497Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 14699..15497 -
1694079045.6816416-UTR-S-dermatodea_contig1014:14698..154971694079045.6816416-UTR-S-dermatodea_contig1014:14698..15497Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 14699..15497 -
1622924141.31487-UTR-S-dermatodea_contig1014:21137..212061622924141.31487-UTR-S-dermatodea_contig1014:21137..21206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 21138..21206 -
1694079045.8014717-UTR-S-dermatodea_contig1014:21137..212061694079045.8014717-UTR-S-dermatodea_contig1014:21137..21206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1014 21138..21206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.2602096-CDS-S-dermatodea_contig1014:15497..156031622924141.2602096-CDS-S-dermatodea_contig1014:15497..15603Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 15498..15603 -
1694079045.6985416-CDS-S-dermatodea_contig1014:15497..156031694079045.6985416-CDS-S-dermatodea_contig1014:15497..15603Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 15498..15603 -
1622924141.2740169-CDS-S-dermatodea_contig1014:17812..180011622924141.2740169-CDS-S-dermatodea_contig1014:17812..18001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 17813..18001 -
1694079045.7183697-CDS-S-dermatodea_contig1014:17812..180011694079045.7183697-CDS-S-dermatodea_contig1014:17812..18001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 17813..18001 -
1622924141.283622-CDS-S-dermatodea_contig1014:18906..189951622924141.283622-CDS-S-dermatodea_contig1014:18906..18995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 18907..18995 -
1694079045.727676-CDS-S-dermatodea_contig1014:18906..189951694079045.727676-CDS-S-dermatodea_contig1014:18906..18995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 18907..18995 -
1622924141.292245-CDS-S-dermatodea_contig1014:20413..204851622924141.292245-CDS-S-dermatodea_contig1014:20413..20485Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 20414..20485 -
1694079045.7554147-CDS-S-dermatodea_contig1014:20413..204851694079045.7554147-CDS-S-dermatodea_contig1014:20413..20485Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 20414..20485 -
1622924141.3035705-CDS-S-dermatodea_contig1014:21134..211371622924141.3035705-CDS-S-dermatodea_contig1014:21134..21137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 21135..21137 -
1694079045.7855816-CDS-S-dermatodea_contig1014:21134..211371694079045.7855816-CDS-S-dermatodea_contig1014:21134..21137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1014 21135..21137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1014.101.1prot_S-dermatodea_contig1014.101.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1014 15498..21137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1014.101.1

>prot_S-dermatodea_contig1014.101.1 ID=prot_S-dermatodea_contig1014.101.1|Name=mRNA_S-dermatodea_contig1014.101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=153bp
MSLVISPEFQHILRILNTNIDGRRKVQYSLTSIKGVGRRFSNLICKKAEV
DPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISS
QAIDQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKIVAAGG
RK*
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mRNA from alignment at S-dermatodea_contig1014:14699..21206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1014.101.1 ID=mRNA_S-dermatodea_contig1014.101.1|Name=mRNA_S-dermatodea_contig1014.101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6508bp|location=Sequence derived from alignment at S-dermatodea_contig1014:14699..21206- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTGGTGCGGGGTGGACACAATCTCCTGTCGCTCTCGGAGGGTGGCTGC
CGGCGGAGGGTTCAGAGCTATGGTGCGTTCCAATCGGAAAGTCAGCAGAA
CTTGGAGCGAACGCGGTGGATATCCCGGGATTGGGAAGAGAGCGCGGAAA
CAGTTTCGATTGAGGCAACAGCCTGGATGATGATGTTTTTTTTGTTGTGT
TTTTTTGGATGGTGGCAATGGCGGCCGTGGGTTATCGCCTCGCCCGTTCT
CTGTGGCAGTGCGCGGCCTAGGAGGGGGCGCCGGAGATCGAGAGGCTCGC
CGCCTGTCGGAATCGCCGTGCTCGACCTTTATCCATGGTCGGATTGTCTG
AATCAGGGCTCTCCCTTGTGCTGAGCGTTCCGTGTTCGTTCTCCTCTGTG
TTCGTTTGTGGTACACACGAGCGGTGTCTTGTTGTCGATTGCCTCTCTTA
TGGACTACCTCCGTCGCGAGTTTCAGGCGATGAGCTTCTCTTTAGCGCAG
CCGAGTGTCCTTGCTGGAGCTGGAGAAACCTCGTGTAGAATTGACGCGCC
TGGTCTTGAGCCTCGCCGTTGGTCAAGACGTTTAACTAGTTTCGCTGCTG
ATGGGCTGTGGCTTCCTTGGCCTTTGTTCGCTGCCTGTTGCTCTGCTCTG
CTCACCGTGCTTACACTGCTGCTTGCTGCTGCGTCCGTCTTGCGCGGTTT
GGGTTTCGCTCTGCCCCACAGTCGCTCGTCATCTCGCCCGAGTTCCAGCA
CATCCTGCGTATTCTCAACACCAACATCGATGGCCGCCGCAAGGTATGTA
CGCGAAGAGAGAGGTTAGGAAAGCGAGGGACTAACAGTTTGTTTGTTGAG
AGTTCAGCAGATATTTTACCAGGCCGCCCTTGCAGCTATTTACTTGCAGA
CAGACAAGCAGCCCCAGCTTTTGGAGAGAGGAACAGCAGTACAGGAGTTC
TCTATTACCTCGACTCACTATTTATGTATCATATGATACTATATATGAAA
AACATATTCGCTATTTATATACTATATTTTAGCACGTCTCATTCTTTGGG
GGAACAACCTACCCACTCTTTCGCCCGGCTTTGTTGTTTGTGTTGGTTTT
GTCGAGCCAGCTGACCTCTGTCAAGCCGTCGTTGCGGGGGTTGTGCGAGA
AAGGAGAGTTGTAGGCCTTTGCACGCTCAACTCAGATCGCGGTGTCTCTT
GGCAAGAAGCTCTGTTTTAGAGCGAGAGCTAAATCCCATCCCCTTCTGCT
GGGTCCCACCCCTTTTTTTGTCTGTCGTGTCCTGCCCGGACCATGAACAT
CACATACAAAACAAATAAGAACATGATACAACTGTAGTACATACTTGGTG
TAATCACCTGGGAAAATAGCCCTTTCGATATTGTATGATACGATACACGA
TGCATGGATGGCACCCAATGCGTGTGATCCCCGAGATTAGGTACATACAC
TACTGTAATAATACTGTGGTGAGGTGTGCAAGCAACACTCTATTGCCCAC
ATCTACTGGCTGTATGATACGCCGTACAATAGTGAGGCTCAGACGGACAA
GTGACTTGGGCTTGCGTGCCGTGCTGTTTCTGGTTTGTTTTTTGTCTTGG
AGCCTGCGCGTTTTTTGCTTATCCCCGCGTGTGTGGAACTCCCAACGTTG
GCGTTAGCGCCCAAGTTCGGAAGACCGCAAATGTTGAACCAGAGCAGTGT
CAAGGTTTGTTGGAACGCGATTGAATACGATTAGGGCGCGTTGCAGCTTT
TTTTCGGTCGCACTAAATCCGAGATATAGACGAGCTGTGGGAGTGCCGAA
CCTAAAGCATTCGCGATAAAAAGCAAAGGTAAGAACATACCGGGGATACG
AGAGATGAGATGATGCCTTGTGACTTGTGACCACAGACGGACCTCGGAAA
CGCAAGTCTATCATATGTGTGCCAACAACAACTATGATACGACTATAGTA
TATATAGTTTTGTACTGAGAGCCCCTCTGCGTCTATCTCGGGGAGGGAGA
GGCCAAACGCCTAAATAGGCCAGTAGAGCTATTTAGGCGGAGGGGTTGGT
ACATTTTGTCGCCGCTGTATTGCCATGTGCTCGGAAGATTTTTTTTTGCA
TATACGTTAAGTACTTGTTGAACATACGTTTACTGGACGGGGGAAAGTCG
CGCGGGTTTTTTACTCCCTTTTTGGTGGTTTCTATTTTCCGCTGCCGCTG
CTGCCATCCAGGTGCAGTACTCGCTGACCTCGATCAAGGGAGTGGGTCGC
CGTTTCTCCAACCTCATCTGCAAGAAGGCCGAGGTGGACCCCAACAAGAG
GTGAGACTAGCCAACTCATTACCTGTGCTTATATTACTCTACCGACAGCA
TCGTAAGTAGTATAGTAAACCTCTCTATATGTTTGTGCCTGTGCTGTTGC
AGCCTCGAATGTTCGGCTTTGTTTGGAGTGTACGATAGCGCGCGCTCGTC
CAGTCACGATGGTGCGGTGCAATAGATCTGCCGTCGAGGCTGTCGGTCGA
TGCTCTCTACTGCCGCACGGGCCAGGCCAGTCGAGATGAGGGAAAGCCCT
CGCGCTCGTCTGAGCCTGCCGGCCATATGACCAAATCAGTGTCAGCCACG
GGTGTGTGTTCCACACATTCGTAATGTTTACCGCCGGCTGCTTCTCCGTG
TGGACTGCCCCCACATACCTACAAAACAAGCATTCAAAAACTGTGGAGAA
CTGGGGTTAATCCCATATGGCACAGCAAACGATACACACGCTGCCCTCGC
GTGTGGCGAGTTTTTACCCATCGCCATTGTACACAGCGCGGCATTTGTGC
TGTTCAGTTTTGCTATTTTATGATAAGAGGGGTGGGGGGGGGGGGGGGGG
GGGCGAATCCCGAAAGCGTTCCTGTGGCTGGCAGTCAACCCACCGATCGT
GGAAGGTTGATGTTTCGTGTACTACTTCTCACCACATTGAAGAACGGCAT
CTCTCGATAAACATGGCGTTTCCTATCGTGCTTGGCATAGGTGTGGTATT
TTGAGGGCTTGTCGACCAGCCACAACTGACAATCCTTTCCAGATTGTTGG
TTTTGCCGTTCTTTTTTTACCTTAAAACTATTAAATTGTACACTACTTAG
CATACCGGGAAAATAACCCCCCTCCCCTTCCGTGCGTACAGCTGACGACT
GAAACCGTTCGCTATTTCACGTCCCGTGTGTTGCGGCTTTGCCCGAACCA
ACCAGGGCCGGGGAGATGACCGCGGACGAGATCGAGAAGCTCGTGGCGAT
CATCCAGAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGC
AAAAGGACTGGAAGACCGGAAAGACGACCCAGATCTCGTCCCAGGCGATC
GACCAGAAGCTGCGAGAGGACCTTGAGCGGCTGAAGAAGATCCGGTGAGC
ATTTCCCGGGTTTCTTAGCTTTGTCATATGCAGCAACAACTGTAGTATTT
CTGTGCGCAAGGTAGATGGGCGCTCAGGGGGTTCGGGGGGGGGGGTGTAT
CTGAATCGCGCTTATTTGACCCCGGTGATGCTTTTGCCACGAGATGAAAT
ACGACGATGGTCGCTTACATTTGTTTCTCGCGTGTTTTTGCTTTTAACAA
CCCATTTGGGCAGCTTGAGTCCGTTTTGACATGGAATAAATAACGTGACT
AGTATAGAGGTATATTGTATATTGTATACTGTACACTGCCATGATACGTA
CACCCGTGGACCACCCGCCGGGCACGCGAGAGCTACGCGTGGTAGGCAAG
GTGTCGCGTTTTCACCGCCACTGTAGTATAGTAGTGTATATATACGCCAA
GAGAGGTCACCTTTCGGGTACAATACTATTCTCTTACTTACAACCTTTGC
GGTGTGAAATGCGGTGCGGGCGACGTCAAGGGCCCTGAAGATGGGCTGAG
CATGATACGAAAAAGGTTAACAGAACGCGAATGTGTCTAATATCTGAGAG
ATACATGTAGAGGCGGGGTCCATGGTAGTGCTTCGCCGGTGTCGTGTACG
CACACACACACACACACATGTATAACTGCATGAGGTTTCTTTGTGGGTTT
TGTATTCGACAAGGTGGGCTATTCACTGCGGGACCTTTCTGCTCACTGAG
CTCTTGCCCGAAACGGGACAAGATAAAAAAAAACTATTTGCGCAGGTACT
ACGAGACTGGCACACCAACATTGCCAGCCTCAACATCAACTGCGCATAGA
ATTAACGGGATTTACTCCCATTCGGGCTAAAGCACTCGTTTACCCTCGCA
CTCACGGGTAGCGGGCCGTTGCGTTCGCAGACATTTCCACAGCATGCTCA
TGGCGTAATAATCGCTAAACGTTTTCATACTTGTATATTGTCGTTCGTAA
GCGTGCCAGAGGGGTTTTACGGACAGTAGAAGCTGTGATATCATACCACT
TTTTTGTTTTGGCCAGTTAACGAAGAAAGGGAACCGAATCCGTTGTTCAG
GGGGGCCGTCTATCGTATCTGCCCGCACAGTGTGTCAACACAGAACAGCG
ACGTAACCGCGGCTACTCTTGATCGATTCGCCTTATGACGGCATTGGTGG
CGGCGGAAGAGACGTGTCCTTTGCCTATGATGCCAGGATTAGCTCGCCCG
CACGGCGCAATTGAATTTACTTCGTACACGTGCGACCTTGACCCGCGCTC
CCGTAGGGACTGGTGACGACTTTTTGTTTTTTCTCGCCAAAACCGGGTCA
TTCCCAACGGGTTGTATTTATATATATACTAGTTTCTTCCGCTGGCTCGA
TTAAAATTAAAATTGTCTGTATTCCGTCGTGGGTCGGTTGTTGACAATTT
TTATTTTCCCCGTGGGCGTATACCTAAAAAATGCCGGCAGTTCCGTCTCT
CACCCTGCGCGAACATTTTCTTATCCCCGGGCGAAACATGCGAAAATATG
GTGAATGATGGGGTGGCCCCATCAGCACTTAACGCTCTTGTGTTAGCACA
ACTTTTGTTGTTGGCGCCCCTCGTGAGACCTTGGAGAGCCTCGCCGTCCC
ATACCGCGCTAGGTTTCCCTGGTCAGTTTGTTTTATATAGCGCTAAGGAC
GAGACGCCCGCTGTCTGCTACAAGTGTTATAAATGGATAGCTGTGGCGAG
GTGCATTCGCTCGATTTCGGCTTCATTTTCTACCCCCTCCGCGTGGCCTA
TGTCCGTCGGATCATGCCCGTCTAGATTCGACATGCGTTTCAAAGATAAA
GCGAGCGTTAGAAGTACCCCCCCCCCCCCATCCCGCTATAACACAAAAGT
TTTTGCGGACTGAGACACTGATGTTAGAAAAACTCCTTTCAAATGTTTAT
TTGAATAGGATCATACATACGATGCGAAGAGACTCCATCGTGAGATAGAG
TAAGTTTATGCGTGGAGCTGTGCAGGTGTCCCCCTTGTCCTGCGTGTACG
CAAGTACGGTGTATGACGAAGTTCTCAATCTAAAAAATAATATCGCCTTC
TGTACCGAATATCCCTATCCTGCCGACAAGTGCATCCATGGCTCAGGTGG
GCACGCTACAACAATATGTCATGCCTGGAAATGCGACGCACGTCTAAACC
CCCGCCCCCACCTCCCACCTTTCGCCCCCCTCCTTGTTTTCTCGGCCTTG
TAGCTCCCACCGTGGTATCCGCCACTACTGGGGCGTGCGTGTGCGCGGGC
AGCACACCAAGACCACCGGACGCCGCGGCAAGATCGTGGCGGCGGGTGGC
CGGAAGTAACCGGGCGGACTTGTTGCACGGCCGTCTTGTTGTCCTTGCCC
ATGAGCTGTTTGCTGCCCTTGGCATCATGCCTCGCGTTCTTGCGTTCGCG
CGGTGTGTTTGGGGTGATTAGCGGCGGGTGCAGGGTTTCTACACCAGAGT
GAACGCAAAAAAAGGAGATTAAAAAACATATAAACACGAAGCAAGCGATG
TCTTTTGTTTTGTCTGTTTGCCTTGTCATCCTGGTTGATGCGGCGCTTTC
GAGCGCCGTTGCTTGGTGAGTTGTGGATGGCCATCGTGTGTGTCTGGTGT
TGGTGGGCACGGCACGCGTGTACATGTAGCCCTGCTCGTGCACAGCACAG
TAGGGCGTAGTAGCCATGCTCCGACCAGTCCGAGATGAATCCTTCTGTGT
CGTTATCGTTTTCACTACAATACAGTATACAACAGCTGTGTAATATTAAT
AGTATAAATTTCGAGATTACTCCTTGTTACGCTTCGTGCTTGGGTTCTAT
TATTTGTGTTATTACAAGTATATATCAGGAGGGCGTACGTATGTTCTACA
TGCCCTATACAAGTAGCCCTGTTTTGGAAGTCCTTGCTTCCGACAGGTTG
CTTCCTCCTCGCCGAGAAGGTTATTGCGCCTTGTACCAGCTGCAATCCTC
GTATGATACGACGTCAACAATACTTGTACGGTATACAAAAGTTCTACAAG
AGTAGAGTTCGTCGTCAGCAGGCGGAAGTGAGTTAATTGTGTGACCATCT
ATAATACAAGCATACAACGGTATCATAGTACTACGAGTACACTTATCATA
AAATCATA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1014:14699..21206-

>mRNA_S-dermatodea_contig1014.101.1 ID=mRNA_S-dermatodea_contig1014.101.1|Name=mRNA_S-dermatodea_contig1014.101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at S-dermatodea_contig1014:14699..21206- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGTCGCTCGTCATCTCGCCCGAGTTCCAGCACATCCTGCGTATTCT
CAACACCAACATCGATGGCCGCCGCAAGTCGCTCGTCATCTCGCCCGAGT
TCCAGCACATCCTGCGTATTCTCAACACCAACATCGATGGCCGCCGCAAG
GTGCAGTACTCGCTGACCTCGATCAAGGGAGTGGGTCGCCGTTTCTCCAA
CCTCATCTGCAAGAAGGCCGAGGTGGACCCCAACAAGAGGTGCAGTACTC
GCTGACCTCGATCAAGGGAGTGGGTCGCCGTTTCTCCAACCTCATCTGCA
AGAAGGCCGAGGTGGACCCCAACAAGAGGGCCGGGGAGATGACCGCGGAC
GAGATCGAGAAGCTCGTGGCGATCATCCAGAACCCCCGCCAGTTCAAGAT
CCCCGACTGGTTCCTCAACAGGCAAAAGGACTGGAAGACCGGAAAGACGA
CCCAGATCTCGTCCCAGGCGATCGACCAGAAGCTGCGAGAGGACCTTGAG
CGGCTGAAGAAGATCCGGGCCGGGGAGATGACCGCGGACGAGATCGAGAA
GCTCGTGGCGATCATCCAGAACCCCCGCCAGTTCAAGATCCCCGACTGGT
TCCTCAACAGGCAAAAGGACTGGAAGACCGGAAAGACGACCCAGATCTCG
TCCCAGGCGATCGACCAGAAGCTGCGAGAGGACCTTGAGCGGCTGAAGAA
GATCCGCTCCCACCGTGGTATCCGCCACTACTGGGGCGTGCGTGTGCGCG
GGCAGCACACCAAGACCACCGGACGCCGCGGCAAGATCGTGGCGGCGGGT
GGCCGGAAGTAACTCCCACCGTGGTATCCGCCACTACTGGGGCGTGCGTG
TGCGCGGGCAGCACACCAAGACCACCGGACGCCGCGGCAAGATCGTGGCG
GCGGGTGGCCGGAAGTAA
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