mRNA_S-dermatodea_contig10136.96.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10136.96.1
Unique NamemRNA_S-dermatodea_contig10136.96.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.180e-72
Identity = 232/438 (52.97%), Postives = 259/438 (59.13%), Query Frame = 1
Query:    1 RSQFDMEPKRLIFQGRILNKDEQTLRECKLKDGLTVVVQA-APAASSTPPSAXXXXXXXXXXXXXXXXXXXXXXXXGGLGAGALMGGMSGMH-------PIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVE-AEGEQSWLLTPSASAWDGLTAGRARIHRVLIALPAAGAAAPARGVAGAGSTAGFAAGLGELPPPGAFXXXXXXXXXXXXXXXXXXXXPDMAMISQMAQNPAMLQGMMNDPSVQAMMRSNPQMGAAMQGMMXXXXXXXXXXXXXXXXXXXXXXXERXXXXXXXXXXXSQMSQESLRAALSGGAGAGTTAAPSFPPPAAGFPAAPXXXXXXXXXXXXXXXXXXGE-------------GNAGGGAESQE--EMTEDELVAEAIRRSMED 1242
            RSQFD+EPKR+IFQGRILNKD+QTL++CKLKDGLTVVVQ  AP AS   P  XXXXXXXXXXXXXXXXXX         G  A    MSG+        P+ Q +A+V  QPAGVARECLTTLTKVIDNI  HPTE+K+RKIKR+NAGF RKVG VPGGEACMRALGFVE  + ++SWLL PS +AW+ LTAGR  I R L  LP A AAA A       ST GFA GLG LPPPGAF                    PDMA +++MAQNPA++QG                    MQ +M                   XXXX  XXXX       +QM          G   AG  AAP  P  A GF A  XXXXXXXXXXXXXXXXXX                + GGG   +E  EMTEDEL+AEAIRRSMED
Sbjct:   47 RSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGAS---PXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGA-------STGGFAGGLGVLPPPGAFPQAGFGGGTGGGGM------PDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMD-------FGGALAAGINAAP--PNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A7S2CJQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJQ0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.340e-20
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  298 VRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVLIAL 585
            V G  A  A+  L TL K++DNI ++P E+K+RKIK+SNA F RK+GG+PGG  C+ ALGF + +GE SW L  +  AW+ LTA +A I   ++AL
Sbjct:   47 VSGNAAPTAKVGLETLVKIVDNIAKNPGEEKYRKIKQSNATFNRKIGGLPGGRECILALGFTD-DGEGSWTLEATGPAWENLTACKAAIEPTIVAL 141          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A7S2SMK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.780e-19
Identity = 67/190 (35.26%), Postives = 93/190 (48.95%), Query Frame = 1
Query:   13 DMEPKRLIFQGRILNKDEQTLRECKLKDGLTVVVQAA--PAASSTPPSAXXXXXXXXXXXXXXXXXXXXXXXXGGLGAGALMGGMSGMHPIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVL 576
            D   +RLI +G+IL KD+Q L   K+  G TV++Q    PAA+   PS                             A A+ G  +    I   L  +   P    R  L TL KVIDNI+Q+P EDK+R+++ +NA F RKVG +PGG  C+R +GF + E E + +L PS  AW  L + R  +   L
Sbjct:   43 DPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPT--------------AAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTDGEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A7S2SNT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.730e-18
Identity = 67/190 (35.26%), Postives = 93/190 (48.95%), Query Frame = 1
Query:   13 DMEPKRLIFQGRILNKDEQTLRECKLKDGLTVVVQAA--PAASSTPPSAXXXXXXXXXXXXXXXXXXXXXXXXGGLGAGALMGGMSGMHPIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVL 576
            D   +RLI +G+IL KD+Q L   K+  G TV++Q    PAA+   PS                             A A+ G  +    I   L  +   P    R  L TL KVIDNI+Q+P EDK+R+++ +NA F RKVG +PGG  C+R +GF + E E + +L PS  AW  L + R  +   L
Sbjct:   43 DPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPSGTQAPVAAAAPMPPT--------------AAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTDGEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A7R9YC84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC84_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.300e-15
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  274 PIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVLIALPAAGAAAPARGVAGAGSTAGF 648
            P    + ++    A    E L TL KV++NI  +P E K+R +K+ NA F R++GGV G  AC+R LGF +  GE +W LTPSASAW+ L+A R  + RV+ A   +  AA A    GA    GF
Sbjct:  181 PFTHAVETLAADDAAKRPEALRTLLKVMENIQNNPLEAKYRTLKKGNAVFNRRLGGVMGAAACLRELGFQD-RGE-TWELTPSASAWEILSAARTHLQRVIEAESPSTQAAAAANAPGAAFGQGF 303          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A1V9Z472_9STRA (Ubiquitin family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z472_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.360e-14
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 1
Query:   19 EPKRLIFQGRILNKDEQTLRECKLKDGLTV--------VVQAAPAASSTPPSAXXXXXXXXXXXXXXXXXXXXXXXXGGLGAGALMGGMSGMHPIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGR 555
            E +RLIFQGR+L+ ++ TL    L DGLTV        +  A PA ++TP S                             A ++    + + P+   L  ++  PAG+A   L TL K+ +NIV HP+E+K+RKI+ +N    +KV  VP G AC+ A+GF     E   +L P+A+ W+ L A +
Sbjct:   40 EAQRLIFQGRVLD-EKATLASYSLADGLTVHLAINTKLMPAAVPAPTTTPASV----------------------------AASIPTPATPVSPLVTLLPLLKQTPAGIA--ALGTLRKMAENIVNHPSEEKYRKIRVANEALKKKVLDVPHGLACVHAMGFAPGVEEGHLVLVPTAANWEQLVAAK 195          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A1V9ZZ66_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZ66_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-13
Identity = 74/188 (39.36%), Postives = 97/188 (51.60%), Query Frame = 1
Query:   19 EPKRLIFQGRILNKDEQTLRECKLKDGLTVVVQAAPAASSTPPSAXXXXXXXXXXXXXXXXXXXXXXXXGGLGAGALMGGMSGMHPIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVLIA 582
            E +RLIFQGR+L+ D+ TL    L   L V +       ++ P+A    XXXXXXXXXX                      S  HPI   L  ++   AG+    LTT+ K+ +NIV HPTE+K+RKI+ SN    RKV  VP G AC++A+GF     E   +L PSA+ WD L A +  I    IA
Sbjct: 1096 EAQRLIFQGRVLD-DKATLTSYGLNSELIVHLAINTKLMASTPAAPSPAXXXXXXXXXXSVQPASS---------------SQQHPIAAHLPLLKQTTAGIT--ALTTIKKMAENIVNHPTEEKYRKIRLSNEALKRKVLDVPHGLACVQAMGFASGVEEGFLVLVPSAANWDQLIAAKRLIDAASIA 1265          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A813IEN4_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IEN4_POLGL)

HSP 1 Score: 80.1 bits (196), Expect = 1.720e-13
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  277 IDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEA--EGEQSWLLTPSASAWDGLTAGRARIHRVL 576
            +D+ +A +      VA+  + TLTK+ +NI+  P E+KF+++K+SNA   RK+  VPGG AC+ ALGF E+  EGE +W     +  +D L  G+AR+ + L
Sbjct:    1 MDRAVAQLLTNSKDVAKTAMDTLTKIAENIIHRPKEEKFKRLKKSNAAVCRKLLDVPGGVACLVALGFTESTHEGEPAWCAPGDSRGFDLLIDGKARLAQEL 102          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A067C9E2_SAPPC (Ubiquitin-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9E2_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 3.270e-13
Identity = 75/203 (36.95%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   19 EPKRLIFQGRILNKDEQTLRECKLKDGLTV--VVQAA--PAASSTP-PSAXXXXXXXXXXXXXXXXXXXXXXXXGGLGAGALMGGMSGMHPIDQPLASVRGQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVLIALPAAGAAAPA 612
            E +RLIFQGR+L+ ++ TL    L DGLTV  V+ A   PAA+ TP P+A XXX                        A +    +  + P+      ++   AGVA   L TL K+ +NIV HPTE+K+RKI+ SN    +KV  VP G AC+ A+GF     E   +L P+A+ W+ L A +  + +      +A AAAPA
Sbjct:   41 EAQRLIFQGRVLD-EKATLASYALTDGLTVHLVINAKLMPAATPTPAPTATXXX------------------------ASSTQVSLVSLLPL------LKQTTAGVA--ALATLKKMAENIVNHPTEEKYRKIRLSNEALKKKVLDVPHGLACVHAMGFAAGVEEGFLVLVPTATNWEHLVASKRLLDQA-----SAPAAAPA 205          
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Match: A0A448ZQX1_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.510e-13
Identity = 58/196 (29.59%), Postives = 88/196 (44.90%), Query Frame = 1
Query:  274 PIDQPLASVR-GQPAGVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACMRALGFV----EAEGEQSWLLTPSASAWDGLTAGRARIHRVLIALPAAGAAAPARGVAGAGSTAGFAAGLGELPPPGAFXXXXXXXXXXXXXXXXXXXXPDMAMISQMAQNPAMLQGMMNDPSVQAMMRSNP 846
            P+   L  +R G P  V    + TL KV+ NIV HP E+K+R++K+ N  F +++GG+ GG  CM A GF     E E  + + L  +A +W+ L   + R+   +    A     P +    AG   G     G  PPPG                           +S+M  +P  LQ  + +P +Q M+RS+P
Sbjct:  147 PLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVAKAAAGDRQQPVQAPGPAGLLPG-----GGFPPPGGLPNDPALRDS----------------VSRMMSDPRALQAALQNPMLQQMIRSDP 321          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10136.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX4_ECTSI1.180e-7252.97Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S2CJQ0_9STRA8.340e-2050.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2SMK3_9STRA4.780e-1935.26Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SNT8_9STRA4.730e-1835.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YC84_9STRA8.300e-1542.40Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1V9Z472_9STRA5.360e-1433.16Ubiquitin family protein n=1 Tax=Achlya hypogyna T... [more]
A0A1V9ZZ66_9STRA1.570e-1339.36Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A813IEN4_POLGL1.720e-1340.20Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A067C9E2_SAPPC3.270e-1336.95Ubiquitin-like domain-containing protein n=2 Tax=S... [more]
A0A448ZQX1_9STRA5.510e-1329.59Ubiquitin-like domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10136contigS-dermatodea_contig10136:5962..7766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue2e-60
Seed eggNOG ortholog2880.D8LAX4
KEGG koko:K04523
KEGG Pathwayko04141,map04141
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0070647,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPUG domain
Ec32 orthologEc-27_006090.1
Exons3
Model size1245
Cds size1230
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10136.96.1prot_S-dermatodea_contig10136.96.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10136 5962..7751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.8258972-CDS-S-dermatodea_contig10136:5961..63391622924140.8258972-CDS-S-dermatodea_contig10136:5961..6339Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10136 5962..6339 -
1694079045.395265-CDS-S-dermatodea_contig10136:5961..63391694079045.395265-CDS-S-dermatodea_contig10136:5961..6339Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10136 5962..6339 -
1622924140.8384304-CDS-S-dermatodea_contig10136:6681..71161622924140.8384304-CDS-S-dermatodea_contig10136:6681..7116Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10136 6682..7116 -
1694079045.411859-CDS-S-dermatodea_contig10136:6681..71161694079045.411859-CDS-S-dermatodea_contig10136:6681..7116Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10136 6682..7116 -
1622924140.8522146-CDS-S-dermatodea_contig10136:7334..77511622924140.8522146-CDS-S-dermatodea_contig10136:7334..7751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10136 7335..7751 -
1694079045.4278717-CDS-S-dermatodea_contig10136:7334..77511694079045.4278717-CDS-S-dermatodea_contig10136:7334..7751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10136 7335..7751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.868359-UTR-S-dermatodea_contig10136:7751..77661622924140.868359-UTR-S-dermatodea_contig10136:7751..7766Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10136 7752..7766 -
1694079045.4385378-UTR-S-dermatodea_contig10136:7751..77661694079045.4385378-UTR-S-dermatodea_contig10136:7751..7766Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10136 7752..7766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10136.96.1

>prot_S-dermatodea_contig10136.96.1 ID=prot_S-dermatodea_contig10136.96.1|Name=mRNA_S-dermatodea_contig10136.96.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=410bp
MEPKRLIFQGRILNKDEQTLRECKLKDGLTVVVQAAPAASSTPPSAASAT
TPSPAAAAPARPAAAAQALPGGLGAGALMGGMSGMHPIDQPLASVRGQPA
GVARECLTTLTKVIDNIVQHPTEDKFRKIKRSNAGFLRKVGGVPGGEACM
RALGFVEAEGEQSWLLTPSASAWDGLTAGRARIHRVLIALPAAGAAAPAR
GVAGAGSTAGFAAGLGELPPPGAFPGGFGGGGGMGMGGGMGGGMPDMAMI
SQMAQNPAMLQGMMNDPSVQAMMRSNPQMGAAMQGMMANPALMSQAFSAM
QNNPAMMQQAERMMQDPAALQQASQMSQESLRAALSGGAGAGTTAAPSFP
PPAAGFPAAPAPAPAALPAAVAPAPAPVGEGNAGGGAESQEEMTEDELVA
EAIRRSMED*
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mRNA from alignment at S-dermatodea_contig10136:5962..7766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10136.96.1 ID=mRNA_S-dermatodea_contig10136.96.1|Name=mRNA_S-dermatodea_contig10136.96.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1805bp|location=Sequence derived from alignment at S-dermatodea_contig10136:5962..7766- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTCGCAGTTCGACATGGAGCCGAAGCGCCTGATCTTCCAGGGGCGCAT CCTCAACAAGGACGAGCAAACCCTCAGAGAATGCAAGCTCAAGGACGGCC TCACCGTCGTGGTTCAAGCGGCCCCAGCGGCATCCTCTACCCCGCCATCG GCCGCATCTGCGACAACACCTTCGCCGGCTGCCGCGGCTCCCGCGAGACC TGCCGCCGCAGCGCAAGCGCTGCCAGGGGGGCTGGGCGCGGGGGCGCTCA TGGGAGGAATGAGCGGGATGCACCCTATCGACCAGCCGTTGGCAAGCGTA CGTGGTCAGCCAGCCGGCGTTGCGCGCGAGTGTTTGACGACGCTGACGAA GGTCATTGATAATATCGTCCAGCACCCCACGGAAGACAAGTTCAGGAAGA TCAAGAGGTCCAACGCTGGGTTTCTGCGAAAGGTGAGACCTGTGACGACA GTTGTGTAACGGGGGGAGAAGTTTGTCCGGTGTGCCCGTTGTTGTGGGAC GGGTATGGCATTGCCGCGCGGCCGCGGGCTTGCAACATATGGTATGTGTC ACCTTCGCGGTTTGAGCGCCTCATTTCTGACCCCGGCAGTCTCTCACCGT GGCTCTTCATCATGCGCTGCTGCTCGCGTACTGAACTAACTTGACGTTAG GTTGGAGGCGTGCCCGGCGGAGAAGCGTGTATGCGAGCCCTCGGTTTCGT CGAAGCCGAGGGCGAACAGAGTTGGCTGTTGACCCCGAGCGCCTCCGCCT GGGACGGCCTCACCGCTGGCCGGGCTCGAATCCACAGAGTTTTGATAGCC CTCCCCGCCGCTGGAGCTGCCGCGCCCGCCCGAGGGGTGGCTGGTGCCGG TTCGACGGCTGGGTTTGCGGCCGGTCTTGGGGAGCTGCCTCCTCCTGGCG CGTTTCCGGGAGGGTTCGGAGGGGGTGGCGGTATGGGGATGGGTGGGGGT ATGGGGGGCGGGATGCCGGACATGGCAATGATCAGCCAGATGGCGCAGAA TCCCGCCATGTTGCAGGGGATGATGAACGATCCTTCGGTGCAGGCCATGA TGAGGAGCAACCCCCAGATGGGGGCGGCGATGCAGGTGTGTTGTTGTTGT AGAAGTAACACAACGGGGGTTTGTCACGGCGTGTCCAGTCAAAGTGGTGT TGTGGTTGTTTTTGCTGGGGGCCCTGTCTTGTGCGACAAAAATCTCGCTC AGGAATACCGCGGCCGCCACTTTTTGCACCGACGCGTGCACCCTAGATCC GCTTCGTCCACGTCTTTGGAAAAAGACTATTAATAGATCATTTATTATTT AGTATTTTTTTGTCCACGTGTTGGCTTTGATACCGAAACGTCACGGAACT TGCACACCGTTCACACTCTTCGTTCCCGCACTTGTCGCACCCGCCCTCTC CCCCCTCCCCGCCCCCCGGCCCCCCAGGGTATGATGGCGAACCCCGCACT CATGTCCCAGGCGTTCAGCGCGATGCAGAACAACCCCGCGATGATGCAGC AAGCGGAACGCATGATGCAGGACCCGGCGGCCCTCCAGCAGGCCTCCCAG ATGTCCCAGGAGAGCCTCCGCGCGGCGCTTTCTGGTGGTGCCGGCGCTGG CACTACCGCCGCGCCGAGTTTTCCACCACCCGCGGCAGGCTTCCCCGCGG CCCCGGCCCCGGCTCCGGCCGCGCTCCCCGCGGCGGTTGCTCCAGCGCCA GCCCCAGTCGGTGAGGGGAATGCGGGAGGCGGAGCTGAAAGCCAGGAGGA GATGACGGAAGACGAGCTAGTGGCGGAGGCGATCCGACGGTCCATGGAGG ATTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10136:5962..7766-

>mRNA_S-dermatodea_contig10136.96.1 ID=mRNA_S-dermatodea_contig10136.96.1|Name=mRNA_S-dermatodea_contig10136.96.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at S-dermatodea_contig10136:5962..7766- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCCGAAGCGCCTGATCTTCCAGGGGCGCATCCTCAACAAGGACGA
GCAAACCCTCAGAGAATGCAAGCTCAAGGACGGCCTCACCGTCGTGGTTC
AAGCGGCCCCAGCGGCATCCTCTACCCCGCCATCGGCCGCATCTGCGACA
ACACCTTCGCCGGCTGCCGCGGCTCCCGCGAGACCTGCCGCCGCAGCGCA
AGCGCTGCCAGGGGGGCTGGGCGCGGGGGCGCTCATGGGAGGAATGAGCG
GGATGCACCCTATCGACCAGCCGTTGGCAAGCGTACGTGGTCAGCCAGCC
GGCGTTGCGCGCGAGTGTTTGACGACGCTGACGAAGGTCATTGATAATAT
CGTCCAGCACCCCACGGAAGACAAGTTCAGGAAGATCAAGAGGTCCAACG
CTGGGTTTCTGCGAAAGATGGAGCCGAAGCGCCTGATCTTCCAGGGGCGC
ATCCTCAACAAGGACGAGCAAACCCTCAGAGAATGCAAGCTCAAGGACGG
CCTCACCGTCGTGGTTCAAGCGGCCCCAGCGGCATCCTCTACCCCGCCAT
CGGCCGCATCTGCGACAACACCTTCGCCGGCTGCCGCGGCTCCCGCGAGA
CCTGCCGCCGCAGCGCAAGCGCTGCCAGGGGGGCTGGGCGCGGGGGCGCT
CATGGGAGGAATGAGCGGGATGCACCCTATCGACCAGCCGTTGGCAAGCG
TACGTGGTCAGCCAGCCGGCGTTGCGCGCGAGTGTTTGACGACGCTGACG
AAGGTCATTGATAATATCGTCCAGCACCCCACGGAAGACAAGTTCAGGAA
GATCAAGAGGTCCAACGCTGGGTTTCTGCGAAAGGTTGGAGGCGTGCCCG
GCGGAGAAGCGTGTATGCGAGCCCTCGGTTTCGTCGAAGCCGAGGGCGAA
CAGAGTTGGCTGTTGACCCCGAGCGCCTCCGCCTGGGACGGCCTCACCGC
TGGCCGGGCTCGAATCCACAGAGTTTTGATAGCCCTCCCCGCCGCTGGAG
CTGCCGCGCCCGCCCGAGGGGTGGCTGGTGCCGGTTCGACGGCTGGGTTT
GCGGCCGGTCTTGGGGAGCTGCCTCCTCCTGGCGCGTTTCCGGGAGGGTT
CGGAGGGGGTGGCGGTATGGGGATGGGTGGGGGTATGGGGGGCGGGATGC
CGGACATGGCAATGATCAGCCAGATGGCGCAGAATCCCGCCATGTTGCAG
GGGATGATGAACGATCCTTCGGTGCAGGCCATGATGAGGAGCAACCCCCA
GATGGGGGCGGCGATGCAGGTTGGAGGCGTGCCCGGCGGAGAAGCGTGTA
TGCGAGCCCTCGGTTTCGTCGAAGCCGAGGGCGAACAGAGTTGGCTGTTG
ACCCCGAGCGCCTCCGCCTGGGACGGCCTCACCGCTGGCCGGGCTCGAAT
CCACAGAGTTTTGATAGCCCTCCCCGCCGCTGGAGCTGCCGCGCCCGCCC
GAGGGGTGGCTGGTGCCGGTTCGACGGCTGGGTTTGCGGCCGGTCTTGGG
GAGCTGCCTCCTCCTGGCGCGTTTCCGGGAGGGTTCGGAGGGGGTGGCGG
TATGGGGATGGGTGGGGGTATGGGGGGCGGGATGCCGGACATGGCAATGA
TCAGCCAGATGGCGCAGAATCCCGCCATGTTGCAGGGGATGATGAACGAT
CCTTCGGTGCAGGCCATGATGAGGAGCAACCCCCAGATGGGGGCGGCGAT
GCAGGGTATGATGGCGAACCCCGCACTCATGTCCCAGGCGTTCAGCGCGA
TGCAGAACAACCCCGCGATGATGCAGCAAGCGGAACGCATGATGCAGGAC
CCGGCGGCCCTCCAGCAGGCCTCCCAGATGTCCCAGGAGAGCCTCCGCGC
GGCGCTTTCTGGTGGTGCCGGCGCTGGCACTACCGCCGCGCCGAGTTTTC
CACCACCCGCGGCAGGCTTCCCCGCGGCCCCGGCCCCGGCTCCGGCCGCG
CTCCCCGCGGCGGTTGCTCCAGCGCCAGCCCCAGTCGGTGAGGGGAATGC
GGGAGGCGGAGCTGAAAGCCAGGAGGAGATGACGGAAGACGAGCTAGTGG
CGGAGGCGATCCGACGGTCCATGGAGGATTAAGGTATGATGGCGAACCCC
GCACTCATGTCCCAGGCGTTCAGCGCGATGCAGAACAACCCCGCGATGAT
GCAGCAAGCGGAACGCATGATGCAGGACCCGGCGGCCCTCCAGCAGGCCT
CCCAGATGTCCCAGGAGAGCCTCCGCGCGGCGCTTTCTGGTGGTGCCGGC
GCTGGCACTACCGCCGCGCCGAGTTTTCCACCACCCGCGGCAGGCTTCCC
CGCGGCCCCGGCCCCGGCTCCGGCCGCGCTCCCCGCGGCGGTTGCTCCAG
CGCCAGCCCCAGTCGGTGAGGGGAATGCGGGAGGCGGAGCTGAAAGCCAG
GAGGAGATGACGGAAGACGAGCTAGTGGCGGAGGCGATCCGACGGTCCAT
GGAGGATTAA
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