mRNA_S-dermatodea_contig10104.71.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE) HSP 1 Score: 188 bits (477), Expect = 6.150e-53 Identity = 92/113 (81.42%), Postives = 100/113 (88.50%), Query Frame = 1
Query: 25 QRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELRSN 363
++DAQPELYGIYDGSVSK+ DFGCFVELRGFP NGKR EGLVHVSQIQNGMLRD SK VKRGQ CKVKV+S AG RL LSIKEV+QTTGEDL+P RGHEAA KLA+EL+SN
Sbjct: 315 KQDAQPELYGIYDGSVSKVMDFGCFVELRGFPPQANGKRQEGLVHVSQIQNGMLRDPSKVVKRGQNCKVKVISMAGARLSLSIKEVDQTTGEDLMPGRGHEAAAKLADELKSN 427
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI) HSP 1 Score: 149 bits (376), Expect = 2.450e-39 Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 25 QRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELRSN 363
++DAQPELYGIYDGSVSK NGKR EGLVHVSQIQNGMLRD SK VKRGQ CKVKV+S AG RL LSIKEV+Q TGEDL+P RGHEAA KLA+EL+SN
Sbjct: 316 KQDAQPELYGIYDGSVSKA----------------NGKRQEGLVHVSQIQNGMLRDPSKVVKRGQNCKVKVISMAGARLSLSIKEVDQATGEDLMPGRGHEAAAKLADELKSN 412
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA) HSP 1 Score: 145 bits (365), Expect = 7.600e-38 Identity = 71/110 (64.55%), Postives = 85/110 (77.27%), Query Frame = 1
Query: 34 AQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELRSN 363
A P+LYGIY+G +SK+ DFG FVELRGFP G+R EGLVHVSQI G LRD AV+RGQ +VKV+S AG R+ LS+KEV+Q TG DL+PERGHEA + AE+LRSN
Sbjct: 342 AVPQLYGIYEGQISKVMDFGAFVELRGFPPGDGGRRPEGLVHVSQISAGALRDPKAAVRRGQRVRVKVISAAGARVSLSMKEVDQETGADLVPERGHEAQARAAEDLRSN 451
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A7S3MIU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIU8_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.910e-32 Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 16 KRGQRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELRS 360
KR ++PE+YGIYDG ++ I DFGCFVEL G R EGLVHV+Q+Q GM++D VKRGQ KVKV+S G ++ LS+KEV+Q TG DLLPER E+ +L +E+R+
Sbjct: 12 KRKAVPSEPEIYGIYDGKITNILDFGCFVELDGM------MRKEGLVHVAQVQQGMIKDLKSVVKRGQKVKVKVISITGTKMALSMKEVDQNTGADLLPERSKESMARLQQEMRN 120
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A7S1XM15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM15_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.030e-28 Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 19 RGQRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELR 357
R R + ELY +Y G V+K DFG FVE+ G P + EGLVHVSQ+ G +R V RGQP KVKV+S AG R+GLS+KEV+Q TG DL P+R E +L E+ R
Sbjct: 14 RRARGGELELYEVYGGRVTKTTDFGAFVEIEGGP-----RGREGLVHVSQLSQGQVRRPDDVVSRGQPVKVKVISMAGSRIGLSMKEVDQATGRDLFPQRSREGLRQLDEDNR 121
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A7S2WCN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCN0_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.920e-27 Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 40 PELYGIYDGSVSKIADFGCFVELRGFPSLPNGKR--LEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELR 357
PE+YGIY G V+KI +FG FVEL G + G+R EGLVHVS I++GM+ D SK V R Q KVK++S AG ++ LS+KEV+Q TG+DL+P R E K+AE+LR
Sbjct: 17 PEVYGIYSGRVTKIMNFGVFVELEG---VSGGRREHKEGLVHVSHIRSGMVTDPSKEVSRNQRVKVKIISIAGTKMSLSMKEVDQRTGQDLMPARSKEGLAKMAEDLR 121
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A7S2MKF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MKF0_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.100e-23 Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 25 QRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNG--KRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEELRSN 363
++ + PELYGIY+G V+KI +FG FVE+ P +G ++ EGLVHVS I+ GM+ D K V R Q KVK++S G ++ L++KEV+Q TG DL+P R + K E+L+++
Sbjct: 164 EQPSGPELYGIYEGKVTKIMNFGVFVEIDA-PGGGSGYDRKSEGLVHVSHIRAGMVTDPGKEVSRNQVVKVKIISMTGNKMSLTMKEVDQRTGADLMPARSRDGLAKATEDLKNS 277
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A0C4ERG8_PUCT1 (S1 motif domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4ERG8_PUCT1) HSP 1 Score: 101 bits (251), Expect = 1.540e-22 Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 31 DAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEE 351
D +P LY IYDG+V+ I DFGCFV L+G + EGLVHV+ I G + S V RGQP KVKVVS AG R+G+S+K+V+Q TG DL P ++ ++AEE
Sbjct: 235 DTRPVLYKIYDGTVASIKDFGCFVTLKGVAG-----KAEGLVHVNAIAAGRVNHPSDLVSRGQPVKVKVVSIAGERIGISMKDVDQNTGADLTPHLRIKSDAEMAEE 336
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A7S2TVY2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVY2_9EUKA) HSP 1 Score: 95.9 bits (237), Expect = 1.610e-22 Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 4 GAVEKRGQRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLR--DASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLP 312
G+ +R R +PE +GIYDG++SK+ DFG FV L GFP R+EGLVHVS I+ G R + ++RGQ KVKV+S ++ LS+++VNQ TGEDL P
Sbjct: 31 GSDRRRRPRGDKPEKFGIYDGTISKVMDFGAFVSLDGFPG-----RVEGLVHVSAIRPGGSRIMNLKDELRRGQKVKVKVISMTTTKISLSMRDVNQKTGEDLRP 130
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Match: A0A5B0NC30_PUCGR (RNA helicase n=1 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0NC30_PUCGR) HSP 1 Score: 100 bits (250), Expect = 2.360e-22 Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 31 DAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGLVHVSQIQNGMLRDASKAVKRGQPCKVKVVSQAGGRLGLSIKEVNQTTGEDLLPERGHEAAIKLAEE 351
D +P LY IYDG+V+ I DFGCFV L+G +GK EGLVHV+ I G + S V RGQP KVKVVS AG R+G+S+K+V+Q TG DL P + ++AEE
Sbjct: 235 DTRPVLYKIYDGTVASIKDFGCFVTLKGV----SGKA-EGLVHVNAIAAGRVNHPSDLVSRGQPVKVKVVSIAGERIGISMKDVDQNTGADLTPHLRIKTDAEMAEE 336 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10104.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10104.71.1 >prot_S-dermatodea_contig10104.71.1 ID=prot_S-dermatodea_contig10104.71.1|Name=mRNA_S-dermatodea_contig10104.71.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp GGAVEKRGQRDAQPELYGIYDGSVSKIADFGCFVELRGFPSLPNGKRLEGback to top mRNA from alignment at S-dermatodea_contig10104:452..1980- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10104.71.1 ID=mRNA_S-dermatodea_contig10104.71.1|Name=mRNA_S-dermatodea_contig10104.71.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1529bp|location=Sequence derived from alignment at S-dermatodea_contig10104:452..1980- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10104:452..1980- >mRNA_S-dermatodea_contig10104.71.1 ID=mRNA_S-dermatodea_contig10104.71.1|Name=mRNA_S-dermatodea_contig10104.71.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig10104:452..1980- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |