mRNA_S-dermatodea_contig10.3.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10.3.1
Unique NamemRNA_S-dermatodea_contig10.3.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10.3.1 vs. uniprot
Match: D7FJD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD9_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.080e-49
Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = 2 
Query:    2 GSPDVTGEEVSDGVRSLSFTKTVNMDA-DRGSYRPTEIKFKFHVKEPLRQVVIYSKPTWSLPISKVVEARAFVTQANHRLNVGSLDLDDCG--SISFKTAAEFGGINDISPVLSSFMEAHASSGMDCFRALESIKDQDANAQDAVSFISRRGTSAE---GVDDKLSKMLSVLAQP 508
            GS +   E+  DG  S+SF   VNM A    +Y P + KF FH+K+PLRQV+IYSKP WSLP  ++   R FV+QANHRLNVG+L++DD    S+SFKTAAEFGGINDI+PVL+SFM+AHA  G+DCFRAL +IK  D +   A+  I   G + E     DDKLS MLSVL+ P
Sbjct:   19 GSVESVFEDRPDGASSMSFKTMVNMAAVGTRTYDPVQFKFTFHIKQPLRQVIIYSKPQWSLPTRQIHAVRQFVSQANHRLNVGTLEVDDSADVSVSFKTAAEFGGINDITPVLTSFMKAHAGVGLDCFRALTAIKYADVDVTHALGMIGMVGPTGEMSTQADDKLSAMLSVLSAP 193
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BLAST of mRNA_S-dermatodea_contig10.3.1 vs. uniprot
Match: A0A6H5LCM9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCM9_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 4.510e-46
Identity = 98/175 (56.00%), Postives = 121/175 (69.14%), Query Frame = 2 
Query:    2 GSPDVTGEEVSDGVRSLSFTKTVNMDA-DRGSYRPTEIKFKFHVKEPLRQVVIYSKPTWSLPISKVVEARAFVTQANHRLNVGSLDLDDCG--SISFKTAAEFGGINDISPVLSSFMEAHASSGMDCFRALESIKDQDANAQDAVSFISRRGTSAE---GVDDKLSKMLSVLAQP 508
            GS +   E+  DG  S+SF   VN  A    SY P + KF FH+K+PLRQV+IYSKP WS+P  ++   R FVTQANHRLNVG+L++DD    S+SFKTAAEFGGINDI+PVL+SFM+AHA  G+DCFRAL +IKD D +   A+  I   G + E     DDKLS MLSVL+ P
Sbjct:  477 GSVESVFEDRPDGASSMSFKTMVNTAAVGTRSYNPVQFKFTFHIKQPLRQVIIYSKPQWSMPTRQIHAVRQFVTQANHRLNVGTLEVDDSADVSVSFKTAAEFGGINDITPVLTSFMKAHAGIGLDCFRALTAIKDADVDVNYALGMIGMVGPTGEMSTQADDKLSAMLSVLSAP 651
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJD9_ECTSI4.080e-4955.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCM9_9PHAE4.510e-4656.00HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10contigS-dermatodea_contig10:813..5609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005970.1
Exons3
Model size1319
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10.3.1prot_S-dermatodea_contig10.3.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10 886..4807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924133.505755-UTR-S-dermatodea_contig10:812..8851622924133.505755-UTR-S-dermatodea_contig10:812..885Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10 813..885 +
1694079038.958241-UTR-S-dermatodea_contig10:812..8851694079038.958241-UTR-S-dermatodea_contig10:812..885Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10 813..885 +
1622924133.5408645-UTR-S-dermatodea_contig10:4807..56091622924133.5408645-UTR-S-dermatodea_contig10:4807..5609Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10 4808..5609 +
1694079039.038671-UTR-S-dermatodea_contig10:4807..56091694079039.038671-UTR-S-dermatodea_contig10:4807..5609Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10 4808..5609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924133.5138783-CDS-S-dermatodea_contig10:885..9601622924133.5138783-CDS-S-dermatodea_contig10:885..960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10 886..960 +
1694079039.004584-CDS-S-dermatodea_contig10:885..9601694079039.004584-CDS-S-dermatodea_contig10:885..960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10 886..960 +
1622924133.5236964-CDS-S-dermatodea_contig10:4032..41191622924133.5236964-CDS-S-dermatodea_contig10:4032..4119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10 4033..4119 +
1694079039.0180461-CDS-S-dermatodea_contig10:4032..41191694079039.0180461-CDS-S-dermatodea_contig10:4032..4119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10 4033..4119 +
1622924133.5319588-CDS-S-dermatodea_contig10:4525..48071622924133.5319588-CDS-S-dermatodea_contig10:4525..4807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10 4526..4807 +
1694079039.0286357-CDS-S-dermatodea_contig10:4525..48071694079039.0286357-CDS-S-dermatodea_contig10:4525..4807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10 4526..4807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10.3.1

>prot_S-dermatodea_contig10.3.1 ID=prot_S-dermatodea_contig10.3.1|Name=mRNA_S-dermatodea_contig10.3.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp
MDADRGSYRPTEIKFKFHVKEPLRQVVIYSKPTWSLPISKVVEARAFVTQ
ANHRLNVGSLDLDDCGSISFKTAAEFGGINDISPVLSSFMEAHASSGMDC
FRALESIKDQDANAQDAVSFISRRGTSAEGVDDKLSKMLSVLAQPTY*
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mRNA from alignment at S-dermatodea_contig10:813..5609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10.3.1 ID=mRNA_S-dermatodea_contig10.3.1|Name=mRNA_S-dermatodea_contig10.3.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4797bp|location=Sequence derived from alignment at S-dermatodea_contig10:813..5609+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGTCTCCAGATGTCACCGGCGAGGAAGTTTCGGACGGAGTCCGGTCGC
TTTCGTTCACGAAGACCGTCAATATGGATGCTGACCGCGGCTCCTACCGC
CCGACCGAAATAAAGTTCAAGTTCCACGTCAAAGAACCTCTTCGTCAGGT
ACGATACGATGCTGTCTTACTACGTCTTATCAGGGCAACAAAAACGCCAA
CGTGCACAGCGCTACTACTGTACCTTATGTATATGCATAGAGCACCAGAG
CACATGCAGCATTATTAAAGTACAAGTAATATTCCGTCAGTTGACAATTC
CGTAGATGTTACAGTATGTATACGAAGAAGGGTTTGGAATGCTGCATATG
GTGGCCGCTGCTATAATACTATTAGTATGATGTGACCGCAAGTATGCGCG
AAAGAGAAATTTCCGCAAGTTTTCCTTAACTGTACGTGGCAATTTCTTCG
TGCAAGCTGGGCCTGCCAAGAACCCGGTATTTGAATAATAATAATGAAAA
GACACAAAACAAGTGTTTTTTTTTGCAGACTATGAAGAAAAAAAACAACG
AGAATCGAAGGCATCTTCTTCACGCAACTCCCGCTCCTTACCCATTCTTG
ACTTTCGTGGTGTTTTCTGTTTTAGCTCTCGTAAATCGATTTTGCCAGGA
CGCTGTAGAAGAGCACATATTGAGACGGGACCTTCGGCAATGACCTCTCC
TTGGTCCACTTGAGAGGTTTTGAGTGCGCAGAATTTTAGTTTGCCACAAA
AAAGGATTTCGGTTTTGCGATGGCCAAGGCTGCCTGGATCGATCGTTTCA
AAAAAATATTTCTTACTTGTAGGAAAATTGAGTTTCACAGACAAGATTGA
TTTTGCCAGGTCAGGTCGAACGGCCAAGTTTGACGAGGTGGTGACTGGCC
CAGACTGTAGAGTGAATAAGTCTTCGCTACCCAAGTACCTGGTCGATTTT
CTCAGGGAAACACATAGTTCGTGGCCCGCTCAGAAAATTCCGAGATTTGT
CAGACCTGTTGCAAGCGCTGCTTGAGAGCAGATTAAATAATCGAGAACGT
AAATCACATCGTTTGCTTTGCGTCTCAGGGGGGAGTGGGCACTCTGTGCG
CCAAGCCACACGTAACCTGTTACGACACTTGTGCACTGTAAAAAACCTCA
GAGAAACATCTCAGAGCAGGACCACTAGCCCGAAGAACTGATTCGGCATG
TAACGGTACAGCGCTCGTCGAGTACTCAAAACGCCACGCCCCATTATTCG
AGTCCCCAGCATTATCTCTTTCGAAACTGTGGTCGTTTTCGGTGCCGTCT
GCCGGCCAAGTATTCCACATCAAACCGTGACCGAACCTTGGGTGCCCCTT
GCCTTGCCATAGCCGCGGTGGAAACGTGATGATAAACCTAGCCACGCCTA
GCTTGCATCCACGGCGGTTGCACTTGTGCACCCGTCACCGCGATAACCCA
TCATACAGTTACCTTCATACAGTTACCGTAGTAACGATAATCTGCGCAAA
AACGGACTCAGCCCCAAAAGGGTTTATTATGCAACCATTTTATAGACTAC
TTGTTGCACTGCTCACACCATCAATGTCCGAGTTTGATGGGTTTACGTAA
GCCTCCCCCCAACTACGAAAGGGGTCTTGAAGAGCTTCAGTGCCACGTAG
GAGAGGTTCCATTCGGTCGGTTGGTATAAGGGAGGGCATGCGTGAAACCA
TTGAGCTCGGACGCGACCATCATAGCACATACAACGTCATATTTTATGGT
GCTTCGCGCTGGTGAAGCTGAAAGGTACACCCTTTTTCCTACGACCAAGC
AGTCAAGAGGCTATACGCGTGATGCATCATGAAGTTTGGGCTAGCTCGAG
CTGTCGATACTCGCTACACACATGAGGGGTCTTCGGATGAACTGCATGAC
CGGGTACACCTTACGGATTCCGGAGGAAGTCGGGCTCAAGCGATTTATCC
TCGTCAAATAGCCTCCCAAGTTGGCAATCTCGTTCGAGGATGTAGCTTAG
CACCAACTACGTGCTCTTGGCGGAACAGGATGAGGGTGTACGGGATTGCA
CTTTTGTTCTCTCTCCTATGCTCGACCGTCGGTCTTATTTTGCATAGGTT
TGTACAGGAAGGCTACATCCGCTCCTGTGGGGTTTTTGGGCATGCTTTTC
TCCTTGACTCTTTGCGCATCTGACCACAGGTCGGGTTGGGATAAGCCGAT
CGGCTGTACCTGTGCAAATCAATCAATCAATCAAAATCCTGACAGGTCCA
ATGGTCACAGCTGTGTATATTGTTACTGGACTCCCTTCCAGGTACCATAC
AACCAATGAATGACTCCGACCAGCAATTCGGTCTCTGCTGAAGGCGTTTA
CCATAAGCCCCCCCAATATTCCCCGCGCGATATATCCCGTGCGATTGTTG
GCCTGAGTGACTGATTTCTCTCCTGGCATCAGCGCTCTTTTTCTTCGAAA
CTCCCCTCCTGCCTTCATGTATGGTTTTCTCGTAGTCAATTCTTGGAACC
GCTACGGTAAGAACAGGAACACCGCGATGACGGAGCTGTTCCACCGAACA
ATTCGCCTGTACCCCAATAGTTCCGGGCATCGACAAGCTGTACCCGATCG
TGGCGTTTGCCCGAAATATTTGTCAACCTTCCATTGGGGTGATAGAGGGG
CACCCGTGTGTAAACGTTTGCCGGGTACGCCCATACTTACTCAGCAGGCG
CGGAGTGTGCGTACGTTGGCAGCGTTCTTTGTACGCAGTAGGGCCTCGTT
TTGGGTGGCTGTTGGTATTCACGAGTGCTTGAAGTGCGGTTTTGCCCATC
TAGTTGCATGCGGATATGTATAATAGCCTATTGATCGATGCATACAGTGT
GGCACAATATGTTGAGCTGGGGATCGCACGTTCCTGATCGGCAATGCTTT
CACAGATATGAATATTTTTGTTAGTACGCAACACCCGTCGTAGCACTTCC
GCGAGTTTCGGTGATTTACAGGTCTCTCACGCTGGCTGTCACCCTCGCTC
TCCCTTGCTATTCATGTGTGGAGGGCACTCCATCTACTTTGGAAATTCCA
TTCCCACCTGTCGCTTCCATGCGCAGTGCTTCCGTACGTGTAGGTAGTGC
GCAGGTGATACGTACCGCAACAGTGTCAGCGACGTGTTTAGCGTTTACGA
GCGGGAAACACCGCCTCGTCTCGTCGTATAAGTGTCTGATGGATTCAAAT
CTCACTTATATTCCCGCCAGGTGGTTATCTACTCGAAACCGACTTGGTCA
CTGCCCATATCGAAGGTAGTTGAAGCTCGAGCCTTCGTGACGCAGGCCAA
CCACAGGGTGAGCTTGTGGCTTCCTATCGCGACTTTAAATGTGTCGCTTG
ATTTTGTCTTTAAACCTGCATGCCGGGGGTCGTTACACGCCTCGTGCACA
TCCCTGCCCGCATTATTGCGTCTGTGCGACTGTGGTCATGCTACATGCTG
CCAGCGTGTCAGGTAGGTGTCCTCCAAGTGTACCGTGTGGAAAACAGAGT
GGAAAGTTCCGTCAGCTACGACTATAATAGGAGGTTGGGGTCTAAAGGGG
GGTATTGTTTCTCTACCTTTTGACGTTTGGTGAACACGCGACCTTGCTGT
CGCATCACCGTACCGCAATGATACTCTTTGATGGAGCGCCTGCTGCTGTT
GTCTCCCGTCGCGTTTTTGTCCTGACTCCCATGCACGGCACCGCCATTTT
CGGACGCACACAGCTGAACGTTGGTAGCCTCGACCTGGACGACTGCGGGA
GTATCTCCTTCAAGACAGCCGCGGAGTTCGGAGGCATCAACGACATCTCC
CCCGTTCTATCTTCCTTTATGGAAGCGCATGCAAGTAGCGGGATGGATTG
CTTCCGTGCCCTGGAATCGATCAAAGACCAAGACGCCAACGCGCAGGATG
CAGTAAGCTTCATCAGCCGGCGAGGAACATCCGCCGAGGGCGTCGATGAC
AAGCTTTCGAAGATGTTGAGTGTTCTTGCACAACCCACTTATTAGTCGTA
ATTTGCTCTTAATAGGGGGCATTCCCCGAAGTGCTGTGTGTGCTAATACT
AAAAGCCCCGGGCAACATTGCCGTACGCCCGGCTTTTGTTTGGTGCCCCC
CCCGAACATGCGGCGGAAACGTCGCAACCGGTGCAATTCTTGTGCAAGAT
ACAAGATTGCGGGTGCAAGTGCACCACGCGATCGGCGGCCCGTCGTGTAT
GATATGCACCAAGACTCGGTCCTGTTTTTGCCTACCATTGCTCTTAGGAT
ATATTTGCGTCGAAGGCAGCTCGTCAAGCACAACTTCTAGGATTGTTTGG
TGTTGTTGGCTTCACGGCGCGCAGGCCGCAGTCTCTCGAAGAGCGGGCTA
GAAATCCCTCATGAGCGAGGGACTGATGGTTTTTTCCGGGGCTAAAGCAA
CACTCGAGCTCACGTCCAATGGGTTTCGTCCTGAAAAGGGACTTGCAACC
GAAAGTTGGGGAATCGGGGGGTGGGTAGGGGAATCGAACATGCACACGTA
TATTGCTGGAGAAGAAAGGGTTAAGCAACACTATCGGGTCCATCGTTCGA
TTGTCGGTCAAAATTGTGTTATTGACGAGAGGGCCTCGTAACCTGTTTTG
GCGGTAACTAACGCGAACGCTCTTGCGTACAGTTTTTAGGACGTACGTAT
GTATCCGACCTTAGGTAGTTGCCTAGTCTTGGCAAAAATTGGACCCGTTT
GTATGCACTTGTATATTGTCGTTCCAATGGTAGAGCTCTAAATGTTTTTA
GATTTTCCTACCTCGATGCGACGACTGTCATCAACCAAATCATGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10:813..5609+

>mRNA_S-dermatodea_contig10.3.1 ID=mRNA_S-dermatodea_contig10.3.1|Name=mRNA_S-dermatodea_contig10.3.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig10:813..5609+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGCTGACCGCGGCTCCTACCGCCCGACCGAAATAAAGTTCAAGTT
CCACGTCAAAGAACCTCTTCGTCAGATGGATGCTGACCGCGGCTCCTACC
GCCCGACCGAAATAAAGTTCAAGTTCCACGTCAAAGAACCTCTTCGTCAG
GTGGTTATCTACTCGAAACCGACTTGGTCACTGCCCATATCGAAGGTAGT
TGAAGCTCGAGCCTTCGTGACGCAGGCCAACCACAGGGTGGTTATCTACT
CGAAACCGACTTGGTCACTGCCCATATCGAAGGTAGTTGAAGCTCGAGCC
TTCGTGACGCAGGCCAACCACAGGCTGAACGTTGGTAGCCTCGACCTGGA
CGACTGCGGGAGTATCTCCTTCAAGACAGCCGCGGAGTTCGGAGGCATCA
ACGACATCTCCCCCGTTCTATCTTCCTTTATGGAAGCGCATGCAAGTAGC
GGGATGGATTGCTTCCGTGCCCTGGAATCGATCAAAGACCAAGACGCCAA
CGCGCAGGATGCAGTAAGCTTCATCAGCCGGCGAGGAACATCCGCCGAGG
GCGTCGATGACAAGCTTTCGAAGATGTTGAGTGTTCTTGCACAACCCACT
TATTAGCTGAACGTTGGTAGCCTCGACCTGGACGACTGCGGGAGTATCTC
CTTCAAGACAGCCGCGGAGTTCGGAGGCATCAACGACATCTCCCCCGTTC
TATCTTCCTTTATGGAAGCGCATGCAAGTAGCGGGATGGATTGCTTCCGT
GCCCTGGAATCGATCAAAGACCAAGACGCCAACGCGCAGGATGCAGTAAG
CTTCATCAGCCGGCGAGGAACATCCGCCGAGGGCGTCGATGACAAGCTTT
CGAAGATGTTGAGTGTTCTTGCACAACCCACTTATTAG
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