prot_S-latissima_F_contig96.17348.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig96.17348.1
Unique Nameprot_S-latissima_F_contig96.17348.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length316
Homology
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BLAST of mRNA_S-latissima_F_contig96.17348.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.090e-29
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0 
Query:  167 GASAANSSK-VCYRCDGCDDFPLQHVRHHCLVCADFDLCPQCYEVCHGPNSQFQGGNVMTLGGHSTAHGMEAVQVNAAQP 245
            G+SA+ S K VCYRCDGCDD PLQHVRHHCLVCADFDLCP+C++  HGPNSQFQG N + LG HST+HGM A+ VN+A P
Sbjct: 4141 GSSASLSKKQVCYRCDGCDDCPLQHVRHHCLVCADFDLCPRCHDRYHGPNSQFQGENAVMLGSHSTSHGMVALPVNSAHP 4220
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BLAST of mRNA_S-latissima_F_contig96.17348.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.790e-26
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:  168 ASAANSSKVCYRCDGCDDFPLQHVRHHCLVCADFDLCPQCYEVCHGPNSQFQGGNVMTLGGHSTAHGMEAVQVNAAQP 245
            +++ +  +VCYRCD CDD PLQHVR+HCLVCADFDLC +CY+  HGPNSQFQG N + LG HST+H M A+ VN+AQP
Sbjct: 3959 SASLSKKQVCYRCDSCDDCPLQHVRYHCLVCADFDLCARCYDRYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQP 4036
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE3.090e-2972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI1.790e-2665.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 174..217
e-value: 0.0037
score: 25.5
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 178..210
e-value: 7.5E-7
score: 28.9
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 178..208
score: 10.599
NoneNo IPR availableGENE3D3.30.60.90coord: 173..241
e-value: 2.5E-9
score: 38.9
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 177..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:373354..375219 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17348.1mRNA_S-latissima_F_contig96.17348.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig96 373354..375221 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig96.17348.1 ID=prot_S-latissima_F_contig96.17348.1|Name=mRNA_S-latissima_F_contig96.17348.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=316bp
GDGAAAAAAARGGNPAAAEVRASADKKSDPIAAPIAAFGDLLSSSRKRAR
TSPSSDGVFGRGSAPRGSGGGAGTGDDQPADRGSRANADAAARAADQNSR
SPTAEPPSGSGRRLEAAAAVATTAAAAAAAAAEVVAAAAHATSVAAAAAT
VAAAAAVTASTGNDAPGASAANSSKVCYRCDGCDDFPLQHVRHHCLVCAD
FDLCPQCYEVCHGPNSQFQGGNVMTLGGHSTAHGMEAVQVNAAQPPSQPG
TSPEQEAPTSAGNPDPSGAVGAVGAGDAVDKKATKDSSEKGPGGEHAEDN
LGEDRKGKGRSDGDNE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ