mRNA_S-latissima_F_contig96.17348.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig96.17348.1
Unique NamemRNA_S-latissima_F_contig96.17348.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig96.17348.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.090e-29
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:  499 GASAANSSK-VCYRCDGCDDFPLQHVRHHCLVCADFDLCPQCYEVCHGPNSQFQGGNVMTLGGHSTAHGMEAVQVNAAQP 735
            G+SA+ S K VCYRCDGCDD PLQHVRHHCLVCADFDLCP+C++  HGPNSQFQG N + LG HST+HGM A+ VN+A P
Sbjct: 4141 GSSASLSKKQVCYRCDGCDDCPLQHVRHHCLVCADFDLCPRCHDRYHGPNSQFQGENAVMLGSHSTSHGMVALPVNSAHP 4220
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BLAST of mRNA_S-latissima_F_contig96.17348.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.790e-26
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:  502 ASAANSSKVCYRCDGCDDFPLQHVRHHCLVCADFDLCPQCYEVCHGPNSQFQGGNVMTLGGHSTAHGMEAVQVNAAQP 735
            +++ +  +VCYRCD CDD PLQHVR+HCLVCADFDLC +CY+  HGPNSQFQG N + LG HST+H M A+ VN+AQP
Sbjct: 3959 SASLSKKQVCYRCDSCDDCPLQHVRYHCLVCADFDLCARCYDRYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQP 4036
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE3.090e-2972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI1.790e-2665.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:373354..375221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue2.7e-25
Seed eggNOG ortholog2880.D8LLX0
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size950
Cds size948
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.7931178-CDS-S-latissima_F_contig96:373353..3740701622817355.7931178-CDS-S-latissima_F_contig96:373353..374070Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig96 373354..374070 +
1693926499.8464093-CDS-S-latissima_F_contig96:373353..3740701693926499.8464093-CDS-S-latissima_F_contig96:373353..374070Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig96 373354..374070 +
1622817355.805246-CDS-S-latissima_F_contig96:374988..3752191622817355.805246-CDS-S-latissima_F_contig96:374988..375219Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig96 374989..375219 +
1693926499.8606236-CDS-S-latissima_F_contig96:374988..3752191693926499.8606236-CDS-S-latissima_F_contig96:374988..375219Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig96 374989..375219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17348.1prot_S-latissima_F_contig96.17348.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig96 373354..375219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig96.17348.1

>prot_S-latissima_F_contig96.17348.1 ID=prot_S-latissima_F_contig96.17348.1|Name=mRNA_S-latissima_F_contig96.17348.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=316bp
GDGAAAAAAARGGNPAAAEVRASADKKSDPIAAPIAAFGDLLSSSRKRAR
TSPSSDGVFGRGSAPRGSGGGAGTGDDQPADRGSRANADAAARAADQNSR
SPTAEPPSGSGRRLEAAAAVATTAAAAAAAAAEVVAAAAHATSVAAAAAT
VAAAAAVTASTGNDAPGASAANSSKVCYRCDGCDDFPLQHVRHHCLVCAD
FDLCPQCYEVCHGPNSQFQGGNVMTLGGHSTAHGMEAVQVNAAQPPSQPG
TSPEQEAPTSAGNPDPSGAVGAVGAGDAVDKKATKDSSEKGPGGEHAEDN
LGEDRKGKGRSDGDNE
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mRNA from alignment at S-latissima_F_contig96:373354..375221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig96.17348.1 ID=mRNA_S-latissima_F_contig96.17348.1|Name=mRNA_S-latissima_F_contig96.17348.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1868bp|location=Sequence derived from alignment at S-latissima_F_contig96:373354..375221+ (Saccharina latissima SLPER63f female)
GGGGATGGCGCGGCCGCGGCTGCGGCTGCGCGCGGGGGTAATCCCGCCGC
GGCAGAAGTACGGGCGTCTGCCGACAAAAAATCTGACCCGATTGCCGCGC
CCATCGCCGCGTTCGGCGACCTCCTGTCGAGCTCGAGGAAGAGGGCGAGA
ACGTCTCCGTCCAGCGACGGAGTATTTGGGCGTGGTTCCGCCCCCAGGGG
TAGCGGCGGCGGTGCCGGTACTGGCGACGACCAACCCGCCGACCGCGGGT
CTAGAGCGAACGCAGACGCGGCGGCGAGAGCGGCGGACCAAAACTCTCGC
TCGCCTACCGCGGAGCCCCCTTCTGGAAGTGGAAGGAGGCTCGAGGCGGC
AGCGGCGGTGGCGACGACGGCTGCTGCTGCGGCTGCGGCTGCGGCGGAAG
TGGTAGCGGCTGCGGCGCATGCAACGAGCGTTGCTGCTGCGGCTGCGACT
GTGGCTGCGGCTGCCGCTGTGACGGCCTCGACGGGAAACGATGCGCCTGG
TGCAAGCGCGGCGAATTCGAGCAAGGTCTGTTACCGCTGCGACGGCTGCG
ACGACTTTCCGCTTCAACACGTCCGGCACCACTGTCTGGTTTGCGCGGAC
TTCGACCTGTGCCCGCAGTGCTACGAAGTGTGCCACGGGCCCAATAGTCA
GTTTCAGGGCGGGAACGTGATGACGCTGGGCGGGCACAGCACGGCGCATG
GGATGGAGGCTGTCCAGGTGAGGTCGGTTTTGATGATTCCCGTTTTTTCT
GCTGCTGCTGCTGCTGCTGCTGTGCTGCTGCTGCTGCTGCTGCTGCTGCA
CGTGAAGCGAGAGACGCCATGGCTTTGCTGACAAGGAGGTTGTTATTTGT
TACCAGGTACCAGGTATATATTCATTTGCCTGCATGTTTTTTATTCAAGT
TATGTTTTTGTGGCACGACCAACAACCGGCTATTTATTATTTTTATTATT
ATGCTTTGTGTTGGTGACATGTTTGGTATTGCGCTTGGTGTGTACCACAC
CACTACTATGAATACTGCAGTATATAAGCAGTATAGGATACTGGTACTTG
TGGTACCTACGCACCACCGCGCTGCTGGTTCTGCCTCTCAGCTGCACAGC
TGCGCAGTTTCTTGCTGGTGGTGGGTGATGGCGGTGGTGGCGGTGGTGTG
TGCCCACGGTATCGTACCGGGGAGTCACCGCGGGGGAGCTTGGAGCCGCT
GTCGCCATTGTCAGCGCCGACTTCTTCTGTGATAACGCTCTATTCCTTTT
GATAAAAAGACATACCACTCTGTCCCTAAAAATACTCTGTCCCTAAATAT
AAGCACCTTTTATACAATAATATTCAATACAACGGTGCTTATATTTCGGG
ACAGAGTGGTACCGGTACGTTTATTTCGATTTGGAATCGTCATGCACTTG
TATAAACCGTTTTCACCTTCATCTGTGGATATACCGAACATTTTTTTCAC
CTTGTCTTCTTATGAATGCCGAACAAAGTGACGATTTCGATCGGTCTCTA
CCTCTTTACAGCCAGTAGGTACATCTATCTGCAGGTGGTGTAATAGGCAT
AACCATTCATACACCAGGTATGCATGTACATATACGGTACCGCGTTTTCG
ACTTGTACTTGTTTTTTTGTTCCTTTCCACGACAGGTTAACGCCGCGCAA
CCGCCGAGCCAGCCGGGCACATCCCCGGAGCAGGAGGCGCCAACCTCTGC
TGGAAACCCCGACCCCAGCGGCGCCGTCGGCGCCGTCGGCGCGGGCGACG
CTGTCGACAAAAAAGCGACGAAAGACAGCAGCGAGAAGGGCCCCGGCGGG
GAGCACGCGGAGGACAACCTTGGCGAGGATCGCAAGGGAAAGGGACGCAG
CGACGGCGATAACGAGCC
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Coding sequence (CDS) from alignment at S-latissima_F_contig96:373354..375221+

>mRNA_S-latissima_F_contig96.17348.1 ID=mRNA_S-latissima_F_contig96.17348.1|Name=mRNA_S-latissima_F_contig96.17348.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1896bp|location=Sequence derived from alignment at S-latissima_F_contig96:373354..375221+ (Saccharina latissima SLPER63f female)
GGGGATGGCGCGGCCGCGGCTGCGGCTGCGCGCGGGGGTAATCCCGCCGC
GGCAGAAGTACGGGCGTCTGCCGACAAAAAATCTGACCCGATTGCCGCGC
CCATCGCCGCGTTCGGCGACCTCCTGTCGAGCTCGAGGAAGAGGGCGAGA
ACGTCTCCGTCCAGCGACGGAGTATTTGGGCGTGGTTCCGCCCCCAGGGG
TAGCGGCGGCGGTGCCGGTACTGGCGACGACCAACCCGCCGACCGCGGGT
CTAGAGCGAACGCAGACGCGGCGGCGAGAGCGGCGGACCAAAACTCTCGC
TCGCCTACCGCGGAGCCCCCTTCTGGAAGTGGAAGGAGGCTCGAGGCGGC
AGCGGCGGTGGCGACGACGGCTGCTGCTGCGGCTGCGGCTGCGGCGGAAG
TGGTAGCGGCTGCGGCGCATGCAACGAGCGTTGCTGCTGCGGCTGCGACT
GTGGCTGCGGCTGCCGCTGTGACGGCCTCGACGGGAAACGATGCGCCTGG
TGCAAGCGCGGCGAATTCGAGCAAGGTCTGTTACCGCTGCGACGGCTGCG
ACGACTTTCCGCTTCAACACGTCCGGCACCACTGTCTGGTTTGCGCGGAC
TTCGACCTGTGCCCGCAGTGCTACGAAGTGTGCCACGGGCCCAATAGTCA
GTTTCAGGGCGGGAACGTGATGACGCTGGGCGGGCACAGCACGGCGCATG
GGATGGAGGCTGTCCAGGGGGATGGCGCGGCCGCGGCTGCGGCTGCGCGC
GGGGGTAATCCCGCCGCGGCAGAAGTACGGGCGTCTGCCGACAAAAAATC
TGACCCGATTGCCGCGCCCATCGCCGCGTTCGGCGACCTCCTGTCGAGCT
CGAGGAAGAGGGCGAGAACGTCTCCGTCCAGCGACGGAGTATTTGGGCGT
GGTTCCGCCCCCAGGGGTAGCGGCGGCGGTGCCGGTACTGGCGACGACCA
ACCCGCCGACCGCGGGTCTAGAGCGAACGCAGACGCGGCGGCGAGAGCGG
CGGACCAAAACTCTCGCTCGCCTACCGCGGAGCCCCCTTCTGGAAGTGGA
AGGAGGCTCGAGGCGGCAGCGGCGGTGGCGACGACGGCTGCTGCTGCGGC
TGCGGCTGCGGCGGAAGTGGTAGCGGCTGCGGCGCATGCAACGAGCGTTG
CTGCTGCGGCTGCGACTGTGGCTGCGGCTGCCGCTGTGACGGCCTCGACG
GGAAACGATGCGCCTGGTGCAAGCGCGGCGAATTCGAGCAAGGTCTGTTA
CCGCTGCGACGGCTGCGACGACTTTCCGCTTCAACACGTCCGGCACCACT
GTCTGGTTTGCGCGGACTTCGACCTGTGCCCGCAGTGCTACGAAGTGTGC
CACGGGCCCAATAGTCAGTTTCAGGGCGGGAACGTGATGACGCTGGGCGG
GCACAGCACGGCGCATGGGATGGAGGCTGTCCAGGTTAACGCCGCGCAAC
CGCCGAGCCAGCCGGGCACATCCCCGGAGCAGGAGGCGCCAACCTCTGCT
GGAAACCCCGACCCCAGCGGCGCCGTCGGCGCCGTCGGCGCGGGCGACGC
TGTCGACAAAAAAGCGACGAAAGACAGCAGCGAGAAGGGCCCCGGCGGGG
AGCACGCGGAGGACAACCTTGGCGAGGATCGCAAGGGAAAGGGACGCAGC
GACGGCGATAACGAGGTTAACGCCGCGCAACCGCCGAGCCAGCCGGGCAC
ATCCCCGGAGCAGGAGGCGCCAACCTCTGCTGGAAACCCCGACCCCAGCG
GCGCCGTCGGCGCCGTCGGCGCGGGCGACGCTGTCGACAAAAAAGCGACG
AAAGACAGCAGCGAGAAGGGCCCCGGCGGGGAGCACGCGGAGGACAACCT
TGGCGAGGATCGCAAGGGAAAGGGACGCAGCGACGGCGATAACGAG
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