prot_S-latissima_F_contig1045.401.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-latissima_F_contig1045.401.1
Unique Name	prot_S-latissima_F_contig1045.401.1
Type	polypeptide
Organism	Saccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length	152

Homology

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 9.680e-52
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG 83
            MHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNA+SFKNGDKIFIGTQKLLPVSRFTGEG
Sbjct:   43 MHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 150 bits (380), Expect = 1.900e-44
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGGGG 86
            MHPCE EMVYKLTN+MVPYFNAGAYL+NKTKIGKVDEI GPVN +MFTVKPDTGV ATSFK GDK++IGT KLLP+SRFTG G  G
Sbjct:   28 MHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXG 113

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.930e-42
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTG 81
            +H CE EMVYKLTN MVPYFNAGAYL+NKTKIGKVDEILGP+NG  FTVKPD GVNATSFK+GDK+FIG  KLLP+SRFTG
Sbjct:   48 VHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.120e-38
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG 83
            MHPCE EMVYKL + MVPYFNAGA+L +KTK+GKVDEI GP+N +MFTVKPD GV+A SFK  DK+F+ T+KLLP+SRFTGEG
Sbjct:   54 MHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.230e-38
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKI 66
            MHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNA+SFKN DKI
Sbjct:   49 MHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A2D4BHY5_PYTIN (H/ACA ribonucleoprotein complex subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BHY5_PYTIN)

HSP 1 Score: 132 bits (333), Expect = 1.870e-36
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 80
            +H CE+EMVYK TN  VPYFNAGAYL+NKTKIGKVDEILG +N VMFTVKPD GV ATSFK GDK++I   KLLP+SRFT
Sbjct:   31 LHACENEMVYKXTNDKVPYFNAGAYLENKTKIGKVDEILGSINNVMFTVKPDAGVTATSFKAGDKVYISPDKLLPLSRFT 110

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.900e-36
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 80
            MH CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+ATSFK GDK+FI   KLLP+SRFT
Sbjct:   62 MHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFT 141

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.330e-36
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG---GGG 86
            MH CEDEMVYK T+  VPYFNAG YL+NKTKIGK+DEILG +N VMFTVKPD+GV A SFK+GDK++I   KLLP+SRFT +G   GGG
Sbjct:   55 MHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGG 143

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BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV)

HSP 1 Score: 132 bits (331), Expect = 7.340e-36
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG 83
            +H CEDEMVYK TN  VPYFNAG YL+NKTKIGKVDEILG +N VMFTVKPD GV+A SFK GDK++I   KLLP+SRFT +G
Sbjct:   54 IHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136

[Close]

BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT)

HSP 1 Score: 133 bits (335), Expect = 1.180e-35
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 80
            MH CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SF+NGDK+FI   KLLP+SRFT
Sbjct:  123 MHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFT 202

The following BLAST results are available for this feature:

BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot

BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KV55_9PHAE	9.680e-52	96.39	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec...	[more]
A0A7S3USE8_HETAK	1.900e-44	82.56	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A835YSJ1_9STRA	5.930e-42	82.72	H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr...	[more]
A0A7S2UZ93_9STRA	1.120e-38	73.49	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
D8LD14_ECTSI	3.230e-38	93.94	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A2D4BHY5_PYTIN	1.870e-36	76.25	H/ACA ribonucleoprotein complex subunit n=2 Tax=Py...	[more]
A0A5D6Y826_9STRA	3.900e-36	77.50	H/ACA ribonucleoprotein complex subunit n=1 Tax=Py...	[more]
A0A6A4XZY0_9STRA	4.330e-36	70.79	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
T0QNK0_SAPDV	7.340e-36	73.49	H/ACA ribonucleoprotein complex subunit n=2 Tax=Sa...	[more]
D0NS88_PHYIT	1.180e-35	76.25	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 1..80 e-value: 1.3E-31 score: 110.3
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 1..80 e-value: 5.5E-26 score: 91.2
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..148
None	No IPR available	PRODOM	PD020235		coord: 2..79 e-value: 5.0E-24 score: 271.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 1..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-latissima_F_contig1045	contig	S-latissima_F_contig1045:26415..26870 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Saccharina latissima female	2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90	2022-09-16
OGS1.0 of Saccharina latissima SLPER63f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-latissima_F_contig1045.401.1	mRNA_S-latissima_F_contig1045.401.1	Saccharina latissima SLPER63f female	mRNA	S-latissima_F_contig1045 26385..27872 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-latissima_F_contig1045.401.1 ID=prot_S-latissima_F_contig1045.401.1|Name=mRNA_S-latissima_F_contig1045.401.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=152bp
MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVK
PDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGGGGGGGRGGGRGRGRGD
ARGGGRGGGRGGGRGGFSSPRGRGGGGMRGGRGGGFSSPRGRGAPRGRGR
F*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR009000	Transl_B-barrel_sf