mRNA_S-latissima_F_contig1045.401.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.850e-52 Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG 279
P+ ELGEFMHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNA+SFKNGDKIFIGTQKLLPVSRFTGEG
Sbjct: 33 PDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK) HSP 1 Score: 163 bits (412), Expect = 4.120e-45 Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEGGGG 288
P + ELG+FMHPCE EMVYKLTN+MVPYFNAGAYL+NKTKIGKVDEI GPVN +MFTVKPDTGV ATSFK GDK++IGT KLLP+SRFTG G G
Sbjct: 18 PEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXG 113
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA) HSP 1 Score: 155 bits (391), Expect = 7.890e-42 Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTG 273
P+ ELG F+H CE EMVYKLTN MVPYFNAGAYL+NKTKIGKVDEILGP+NG FTVKPD GVNATSFK+GDK+FIG KLLP+SRFTG
Sbjct: 38 PSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA) HSP 1 Score: 149 bits (375), Expect = 4.200e-39 Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG 279
P+ ELG FMHPCE EMVYKL + MVPYFNAGA+L +KTK+GKVDEI GP+N +MFTVKPD GV+A SFK DK+F+ T+KLLP+SRFTGEG
Sbjct: 44 PDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI) HSP 1 Score: 146 bits (369), Expect = 7.530e-39 Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1
Query: 13 TELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKI 228
+ELGEFMHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNA+SFKN DKI
Sbjct: 43 SELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA) HSP 1 Score: 146 bits (368), Expect = 2.440e-37 Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 270
P H ELG FMH CE+EMVYK TN VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+ATSFK GDK+FI KLLP+SRFT
Sbjct: 52 PAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFT 141
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA) HSP 1 Score: 140 bits (352), Expect = 9.010e-36 Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 1
Query: 16 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFTGEG---GGG 288
ELG FMH CEDEMVYK T+ VPYFNAG YL+NKTKIGK+DEILG +N VMFTVKPD+GV A SFK+GDK++I KLLP+SRFT +G GGG
Sbjct: 50 ELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGG 143
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT) HSP 1 Score: 143 bits (360), Expect = 1.570e-35 Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 270
P ELG FMH CE+EMVYK TN VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SF+NGDK+FI KLLP+SRFT
Sbjct: 113 PAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFT 202
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: K3WS95_GLOUD (H/ACA ribonucleoprotein complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS95_GLOUD) HSP 1 Score: 140 bits (354), Expect = 1.990e-35 Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 270
P ELG FMH CE+EMVYK TN VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A SFK GDK+FI KLLP+SRFT
Sbjct: 48 PAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSAASFKAGDKVFISPDKLLPLSRFT 137
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Match: A0A225WG95_9STRA (H/ACA ribonucleoprotein complex subunit n=5 Tax=Phytophthora TaxID=4783 RepID=A0A225WG95_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.910e-35 Identity = 64/90 (71.11%), Postives = 76/90 (84.44%), Query Frame = 1
Query: 1 PNHPTELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNATSFKNGDKIFIGTQKLLPVSRFT 270
P+ ELG FMH CE+EMVYK TN VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SF+ GDK+FI KLLP++RFT
Sbjct: 39 PSFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQAGDKVFISPDKLLPLARFT 128 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1045.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1045.401.1 >prot_S-latissima_F_contig1045.401.1 ID=prot_S-latissima_F_contig1045.401.1|Name=mRNA_S-latissima_F_contig1045.401.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=152bp MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKback to top mRNA from alignment at S-latissima_F_contig1045:26385..27872+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1045.401.1 ID=mRNA_S-latissima_F_contig1045.401.1|Name=mRNA_S-latissima_F_contig1045.401.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1488bp|location=Sequence derived from alignment at S-latissima_F_contig1045:26385..27872+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1045:26385..27872+ >mRNA_S-latissima_F_contig1045.401.1 ID=mRNA_S-latissima_F_contig1045.401.1|Name=mRNA_S-latissima_F_contig1045.401.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=912bp|location=Sequence derived from alignment at S-latissima_F_contig1045:26385..27872+ (Saccharina latissima SLPER63f female)back to top |