prot_S-latissima_F_contig1032.290.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig1032.290.1
Unique Nameprot_S-latissima_F_contig1032.290.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length206
Homology
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BLAST of mRNA_S-latissima_F_contig1032.290.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.660e-36
Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 0 
Query:    4 IENAEENKAWPHNNWMLYNFLFLSTTGAAASFLLRYKPKQGEIPNEKAAWDGMISKYQNSTRQRRRIMKNQFVPMVMTEGQDADVYIKEIYYIRDELVEMGEVINDDSLLDIVLEGLTDE-YLQIKYNAEEDDNFTLENAIYTMRNMHANRIAKSGPSRKQKGRESAMVTTFSKKGECHICNKAGHWAREC 193
            I N +E  AW  +N ML  FL + TTGAA  F+  +KPK   + +   AW  ++ KY+N +RQR++I+  +   M M    D D ++ ++  +RDEL  +G  I DD  ++I+L+ L +E Y  IKY AE  D+ TLE A+YTMRN++ NR   SG SR  KGR SAMV + +K   C  C+K GH  + C
Sbjct:  184 IINRDEIIAWHSSNTMLGAFLSMCTTGAAKKFVATFKPKPDMMFHGIVAWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTLEQALYTMRNLYINRKEASGSSRAAKGRSSAMVASTTK--TCSFCHKKGHLTQHC 372
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BLAST of mRNA_S-latissima_F_contig1032.290.1 vs. uniprot
Match: UPI000510E6D6 (uncharacterized protein LOC103941999 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000510E6D6)

HSP 1 Score: 68.6 bits (166), Expect = 4.610e-10
Identity = 58/218 (26.61%), Postives = 98/218 (44.95%), Query Frame = 0 
Query:    1 GSDIENAEENKAWPHNNWMLYNFLFLSTTGAAASFLLRYKPKQGEIPNEKAAWDGMISKYQNSTRQRRRIMKNQFVPMVMTEGQDADVYIKEIYYIRDELVEMGEVINDDSLLDIVLEGLTDEYLQIK-YNAEEDDNFTLENAIYTMRNMHANR----------------IAKSGPSRKQKGR---ESAMVTTFSK-KGECHICNKAGHWARECRNRK 197
            G+ +E      AW H++++  N++  +   A  +    Y P    I + KA W+ +  KY+      ++ + ++F+   MT+ +     ++E+  I  E+   G  +++   +  V+E L   +   K Y   +     LE+ I  +R    NR                I K GP   +K +   ES+    F K KG+C +CNK GH ARECRNRK
Sbjct:   70 GTTVEEVAAVDAWNHSDFLCKNYILNALDNALYNV---YSP----IKSAKALWNSLNKKYKTEDVGMKKFVVSRFLDYKMTDSKKVINQVQELQLILHEIHAEGMSLSETFQVAAVIEKLPPAWKDFKNYLKHKRKEMGLEDLIVRLRIEEDNRCSKKKSNSQLMQAKAHIVKGGPKNNKKRKHSGESSSQGNFKKFKGKCFVCNKTGHRARECRNRK 280
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1032.290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE2.660e-3641.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI000510E6D64.610e-1026.61uncharacterized protein LOC103941999 n=1 Tax=Pyrus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 179..195
e-value: 0.0012
score: 28.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 179..194
e-value: 2.0E-4
score: 21.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 180..195
score: 9.076
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 48..148
e-value: 7.3E-13
score: 48.4
NoneNo IPR availableGENE3D4.10.60.10coord: 152..205
e-value: 6.1E-7
score: 31.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..206
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..17
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 175..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1032contigS-latissima_F_contig1032:96139..96756 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1032.290.1mRNA_S-latissima_F_contig1032.290.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig1032 96139..96756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig1032.290.1 ID=prot_S-latissima_F_contig1032.290.1|Name=mRNA_S-latissima_F_contig1032.290.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=206bp
GSDIENAEENKAWPHNNWMLYNFLFLSTTGAAASFLLRYKPKQGEIPNEK
AAWDGMISKYQNSTRQRRRIMKNQFVPMVMTEGQDADVYIKEIYYIRDEL
VEMGEVINDDSLLDIVLEGLTDEYLQIKYNAEEDDNFTLENAIYTMRNMH
ANRIAKSGPSRKQKGRESAMVTTFSKKGECHICNKAGHWARECRNRKSSM
KDTNKN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf