mRNA_S-latissima_F_contig1032.290.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1032.290.1
Unique NamemRNA_S-latissima_F_contig1032.290.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1032.290.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.660e-36
Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 1 
Query:   10 IENAEENKAWPHNNWMLYNFLFLSTTGAAASFLLRYKPKQGEIPNEKAAWDGMISKYQNSTRQRRRIMKNQFVPMVMTEGQDADVYIKEIYYIRDELVEMGEVINDDSLLDIVLEGLTDE-YLQIKYNAEEDDNFTLENAIYTMRNMHANRIAKSGPSRKQKGRESAMVTTFSKKGECHICNKAGHWAREC 579
            I N +E  AW  +N ML  FL + TTGAA  F+  +KPK   + +   AW  ++ KY+N +RQR++I+  +   M M    D D ++ ++  +RDEL  +G  I DD  ++I+L+ L +E Y  IKY AE  D+ TLE A+YTMRN++ NR   SG SR  KGR SAMV + +K   C  C+K GH  + C
Sbjct:  184 IINRDEIIAWHSSNTMLGAFLSMCTTGAAKKFVATFKPKPDMMFHGIVAWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTLEQALYTMRNLYINRKEASGSSRAAKGRSSAMVASTTK--TCSFCHKKGHLTQHC 372
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BLAST of mRNA_S-latissima_F_contig1032.290.1 vs. uniprot
Match: UPI000510E6D6 (uncharacterized protein LOC103941999 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000510E6D6)

HSP 1 Score: 68.6 bits (166), Expect = 4.610e-10
Identity = 58/218 (26.61%), Postives = 98/218 (44.95%), Query Frame = 1 
Query:    1 GSDIENAEENKAWPHNNWMLYNFLFLSTTGAAASFLLRYKPKQGEIPNEKAAWDGMISKYQNSTRQRRRIMKNQFVPMVMTEGQDADVYIKEIYYIRDELVEMGEVINDDSLLDIVLEGLTDEYLQIK-YNAEEDDNFTLENAIYTMRNMHANR----------------IAKSGPSRKQKGR---ESAMVTTFSK-KGECHICNKAGHWARECRNRK 591
            G+ +E      AW H++++  N++  +   A  +    Y P    I + KA W+ +  KY+      ++ + ++F+   MT+ +     ++E+  I  E+   G  +++   +  V+E L   +   K Y   +     LE+ I  +R    NR                I K GP   +K +   ES+    F K KG+C +CNK GH ARECRNRK
Sbjct:   70 GTTVEEVAAVDAWNHSDFLCKNYILNALDNALYNV---YSP----IKSAKALWNSLNKKYKTEDVGMKKFVVSRFLDYKMTDSKKVINQVQELQLILHEIHAEGMSLSETFQVAAVIEKLPPAWKDFKNYLKHKRKEMGLEDLIVRLRIEEDNRCSKKKSNSQLMQAKAHIVKGGPKNNKKRKHSGESSSQGNFKKFKGKCFVCNKTGHRARECRNRK 280
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1032.290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE2.660e-3641.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI000510E6D64.610e-1026.61uncharacterized protein LOC103941999 n=1 Tax=Pyrus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1032contigS-latissima_F_contig1032:96139..96756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.6
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog225117.XP_009350471.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37UIU@33090,3GY7W@35493,4JWFD@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.189209-CDS-S-latissima_F_contig1032:96138..967561622815398.189209-CDS-S-latissima_F_contig1032:96138..96756Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1032 96139..96756 +
1693924860.4634202-CDS-S-latissima_F_contig1032:96138..967561693924860.4634202-CDS-S-latissima_F_contig1032:96138..96756Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1032 96139..96756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1032.290.1prot_S-latissima_F_contig1032.290.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1032 96139..96756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1032.290.1

>prot_S-latissima_F_contig1032.290.1 ID=prot_S-latissima_F_contig1032.290.1|Name=mRNA_S-latissima_F_contig1032.290.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=206bp
GSDIENAEENKAWPHNNWMLYNFLFLSTTGAAASFLLRYKPKQGEIPNEK
AAWDGMISKYQNSTRQRRRIMKNQFVPMVMTEGQDADVYIKEIYYIRDEL
VEMGEVINDDSLLDIVLEGLTDEYLQIKYNAEEDDNFTLENAIYTMRNMH
ANRIAKSGPSRKQKGRESAMVTTFSKKGECHICNKAGHWARECRNRKSSM
KDTNKN
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mRNA from alignment at S-latissima_F_contig1032:96139..96756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1032.290.1 ID=mRNA_S-latissima_F_contig1032.290.1|Name=mRNA_S-latissima_F_contig1032.290.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=618bp|location=Sequence derived from alignment at S-latissima_F_contig1032:96139..96756+ (Saccharina latissima SLPER63f female)
GGCTCTGACATCGAAAACGCTGAAGAAAACAAAGCTTGGCCCCACAATAA
CTGGATGCTATACAACTTTCTGTTCCTGAGTACGACGGGAGCAGCTGCAA
GTTTCCTCCTACGGTACAAGCCCAAACAAGGTGAAATACCAAATGAAAAG
GCCGCTTGGGATGGTATGATATCAAAATACCAAAACTCAACGCGACAGAG
AAGGCGTATCATGAAAAATCAATTTGTCCCTATGGTGATGACAGAAGGTC
AGGACGCTGACGTATATATAAAAGAAATTTATTATATACGAGACGAATTG
GTTGAGATGGGCGAAGTCATAAATGATGATAGCCTACTGGATATTGTATT
GGAAGGACTGACAGATGAATATCTTCAGATCAAATACAATGCAGAAGAGG
ACGACAATTTCACGCTGGAAAATGCGATTTATACGATGCGCAATATGCAT
GCAAATCGAATAGCAAAAAGCGGGCCTTCGCGAAAACAGAAGGGGCGTGA
GTCGGCTATGGTAACAACGTTCTCTAAGAAAGGGGAGTGCCATATCTGCA
ACAAAGCCGGACATTGGGCAAGAGAATGCCGCAATCGCAAAAGTTCGATG
AAAGATACGAACAAGAAT
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Coding sequence (CDS) from alignment at S-latissima_F_contig1032:96139..96756+

>mRNA_S-latissima_F_contig1032.290.1 ID=mRNA_S-latissima_F_contig1032.290.1|Name=mRNA_S-latissima_F_contig1032.290.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1236bp|location=Sequence derived from alignment at S-latissima_F_contig1032:96139..96756+ (Saccharina latissima SLPER63f female)
GGCTCTGACATCGAAAACGCTGAAGAAAACAAAGCTTGGCCCCACAATAA
CTGGATGCTATACAACTTTCTGTTCCTGAGTACGACGGGAGCAGCTGCAA
GTTTCCTCCTACGGTACAAGCCCAAACAAGGTGAAATACCAAATGAAAAG
GCCGCTTGGGATGGTATGATATCAAAATACCAAAACTCAACGCGACAGAG
AAGGCGTATCATGAAAAATCAATTTGTCCCTATGGTGATGACAGAAGGTC
AGGACGCTGACGTATATATAAAAGAAATTTATTATATACGAGACGAATTG
GTTGAGATGGGCGAAGTCATAAATGATGATAGCCTACTGGATATTGTATT
GGAAGGACTGACAGATGAATATCTTCAGATCAAATACAATGCAGAAGAGG
ACGACAATTTCACGCTGGAAAATGCGATTTATACGATGCGCAATATGCAT
GCAAATCGAATAGCAAAAAGCGGGCCTTCGCGAAAACAGAAGGGGCGTGA
GTCGGCTATGGTAACAACGTTCTCTAAGAAAGGGGAGTGCCATATCTGCA
ACAAAGCCGGACATTGGGCAAGAGAATGCCGCAATCGCAAAAGTTCGATG
AAAGATACGAACAAGAATGGCTCTGACATCGAAAACGCTGAAGAAAACAA
AGCTTGGCCCCACAATAACTGGATGCTATACAACTTTCTGTTCCTGAGTA
CGACGGGAGCAGCTGCAAGTTTCCTCCTACGGTACAAGCCCAAACAAGGT
GAAATACCAAATGAAAAGGCCGCTTGGGATGGTATGATATCAAAATACCA
AAACTCAACGCGACAGAGAAGGCGTATCATGAAAAATCAATTTGTCCCTA
TGGTGATGACAGAAGGTCAGGACGCTGACGTATATATAAAAGAAATTTAT
TATATACGAGACGAATTGGTTGAGATGGGCGAAGTCATAAATGATGATAG
CCTACTGGATATTGTATTGGAAGGACTGACAGATGAATATCTTCAGATCA
AATACAATGCAGAAGAGGACGACAATTTCACGCTGGAAAATGCGATTTAT
ACGATGCGCAATATGCATGCAAATCGAATAGCAAAAAGCGGGCCTTCGCG
AAAACAGAAGGGGCGTGAGTCGGCTATGGTAACAACGTTCTCTAAGAAAG
GGGAGTGCCATATCTGCAACAAAGCCGGACATTGGGCAAGAGAATGCCGC
AATCGCAAAAGTTCGATGAAAGATACGAACAAGAAT
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