prot_S-latissima_F_contig103.261.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig103.261.1
Unique Nameprot_S-latissima_F_contig103.261.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length129
Homology
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.210e-63
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0
Query:    1 MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKR--PPQP 105
            MEG GTRFE+ELELMNCLASPEYLHYLAQSGYLDD AF+RFLEYLQYFKRPEYA+FI+YPHSLAMLDLL+NNP FRKEIAHVSFRDFVHQQQFLHWQFGK   PP+P
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRP 107          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.260e-42
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 0
Query:    1 MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRK 77
            MEG GTRFE+ELELMNCLASPEYLHYLAQ GYLDD AF+RFLEYLQYFKRPEYA+FI+YPHSLAMLDLL+NNP FRK
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.340e-39
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0
Query:    2 EGVGT-RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKRPP 103
            E VG  RFEVELE + CLASPEYLH+LAQ  Y DD AF+ FL+YL Y++RP+YA+++ YPH LAMLD L+N+  FR E+   SFRDFVHQQQF HWQ  +R P
Sbjct:   19 EDVGAQRFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKRFRSELLMESFRDFVHQQQFFHWQHKRRDP 121          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.520e-37
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 0
Query:    7 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKR 101
            RFE+ELE + CLASP YLH+LA SG L DS+FL FLEYL+Y+ RPEYARFI+YPH L  LDLL  N  FR+E+A+V+FR+FVH+QQF  WQF  R
Sbjct:   33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRREMANVAFRNFVHEQQFYSWQFRSR 127          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 129 bits (323), Expect = 1.840e-35
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 0
Query:    1 MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQ 97
            ++G  +RFEVELE + CL+SPEYLHYLAQ+ Y +D AF+ FL YLQY++RPEYA+FI YPH LA +++L +   FRKE+A   F++FVHQQQF HWQ
Sbjct:   40 LDGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEMLEDEA-FRKELAKPGFKEFVHQQQFFHWQ 135          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S2XM67_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM67_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.350e-32
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 0
Query:    7 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQF 98
            RFE+ELE +  LASP Y+H+LA SG L   +F+ FL YLQY+KRPEYA++ISYPH    LDLL++N  FR+E+A+V FR+FVH+QQF  WQ+
Sbjct:   28 RFELELEFLQSLASPAYVHHLATSGILQSPSFIAFLRYLQYWKRPEYAKYISYPHCFFFLDLLIHNEPFRREMANVGFRNFVHEQQFYSWQY 119          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S2EVA4_TRICV (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVA4_TRICV)

HSP 1 Score: 119 bits (298), Expect = 7.490e-32
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0
Query:    7 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQ 97
            RFE+ELE + CLASP Y+H+LA SG L D +FL FL YL+Y+  PEYARF+ YPH L  LDLL  +  FR+E+A+V+FR+FVH+QQF  WQ
Sbjct:   39 RFELELEFVQCLASPAYMHHLATSGLLSDPSFLSFLRYLRYWSHPEYARFLVYPHCLYFLDLLCESEGFRREMANVAFRNFVHEQQFYGWQ 129          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S3QJ33_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ33_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.540e-30
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0
Query:    7 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQ-YFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKR 101
            RFE+ELE +  LASP YLH+LA  GY  D AFL +L YL+ Y+ RPEYA++I+YPH L  LDL +    FRKEI+ V FR+FVH+QQF++WQ+  R
Sbjct:   77 RFELELEFVQSLASPAYLHHLATQGYFQDEAFLTYLRYLRSYWTRPEYAKYITYPHCLFFLDLAIEKEAFRKEISQVGFRNFVHEQQFMNWQYRSR 172          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A6V2LYR4_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LYR4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.830e-29
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    7 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQF 98
            RFE+ELE + CLASP YLH+LA+S  L   +FL +     Y+KRPEY RFI YPH L  LDL++ N  FR+E+ +V FR+FVH+QQF  WQF
Sbjct:   50 RFELELEFIQCLASPAYLHHLAESNVLSSPSFLSYXXXXXYWKRPEYVRFIIYPHCLYFLDLILENETFRREMGNVGFRNFVHEQQFYSWQF 141          
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A2P6TGR1_CHLSO (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGR1_CHLSO)

HSP 1 Score: 110 bits (275), Expect = 1.960e-28
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 0
Query:    7 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGK 100
            RFE+ELE ++CLA+P YL++LAQ+ Y +D AFL +L+YL Y+++P+YARFI YPH+L  LDLL   P FR +IA+ ++++ VH QQF  WQ+ +
Sbjct:   22 RFELELEFLHCLANPGYLNWLAQNRYFEDEAFLEYLKYLLYWRQPQYARFIVYPHALYFLDLL-QTPEFRAKIANPAYKEMVHTQQFFFWQYAR 114          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L203_9PHAE2.210e-6388.79Mediator of RNA polymerase II transcription subuni... [more]
D7FV80_ECTSI3.260e-4288.31Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA1.340e-3963.11Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA1.520e-3766.32Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK1.840e-3560.82Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2XM67_9STRA1.350e-3259.78Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2EVA4_TRICV7.490e-3260.44Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3QJ33_9STRA5.540e-3057.29Mediator of RNA polymerase II transcription subuni... [more]
A0A6V2LYR4_9STRA5.830e-2956.52Mediator of RNA polymerase II transcription subuni... [more]
A0A2P6TGR1_CHLSO1.960e-2853.19Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..128
IPR038089Mediator complex, subunit Med31 domain superfamilyGENE3D1.10.10.1340coord: 2..95
e-value: 4.9E-28
score: 98.5
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 6..97
e-value: 8.9E-33
score: 112.2
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 6..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig103contigS-latissima_F_contig103:308900..313749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig103.261.1mRNA_S-latissima_F_contig103.261.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig103 307879..313996 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig103.261.1 ID=prot_S-latissima_F_contig103.261.1|Name=mRNA_S-latissima_F_contig103.261.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=129bp
MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKR
PEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGK
RPPQPTTPEEQQQQQQEQQQQQQQQQQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038089Med31_sf
IPR008831Mediator_Med31