mRNA_S-latissima_F_contig103.261.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig103.261.1
Unique NamemRNA_S-latissima_F_contig103.261.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.130e-57
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 2 
Query:  248 MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKR--PPQP 562
            MEG GTRFE+ELELMNCLASPEYLHYLAQSGYLDD AF+RFLEYLQYFKRPEYA+FI+YPHSLAMLDLL+NNP FRKEIAHVSFRDFVHQQQFLHWQFGK   PP+P
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRP 107
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.770e-37
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 2 
Query:  248 MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRK 478
            MEG GTRFE+ELELMNCLASPEYLHYLAQ GYLDD AF+RFLEYLQYFKRPEYA+FI+YPHSLAMLDLL+NNP FRK
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.220e-35
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 2 
Query:  251 EGVGT-RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKRPP 556
            E VG  RFEVELE + CLASPEYLH+LAQ  Y DD AF+ FL+YL Y++RP+YA+++ YPH LAMLD L+N+  FR E+   SFRDFVHQQQF HWQ  +R P
Sbjct:   19 EDVGAQRFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKRFRSELLMESFRDFVHQQQFFHWQHKRRDP 121
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.230e-33
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 2 
Query:  266 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKR 550
            RFE+ELE + CLASP YLH+LA SG L DS+FL FLEYL+Y+ RPEYARFI+YPH L  LDLL  N  FR+E+A+V+FR+FVH+QQF  WQF  R
Sbjct:   33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRREMANVAFRNFVHEQQFYSWQFRSR 127
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 128 bits (322), Expect = 3.940e-31
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 2 
Query:  248 MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQ 538
            ++G  +RFEVELE + CL+SPEYLHYLAQ+ Y +D AF+ FL YLQY++RPEYA+FI YPH LA +++L +   FRKE+A   F++FVHQQQF HWQ
Sbjct:   40 LDGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEMLEDEA-FRKELAKPGFKEFVHQQQFFHWQ 135
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S2XM67_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM67_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.230e-28
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 2 
Query:  266 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQF 541
            RFE+ELE +  LASP Y+H+LA SG L   +F+ FL YLQY+KRPEYA++ISYPH    LDLL++N  FR+E+A+V FR+FVH+QQF  WQ+
Sbjct:   28 RFELELEFLQSLASPAYVHHLATSGILQSPSFIAFLRYLQYWKRPEYAKYISYPHCFFFLDLLIHNEPFRREMANVGFRNFVHEQQFYSWQY 119
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S2EVA4_TRICV (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVA4_TRICV)

HSP 1 Score: 119 bits (298), Expect = 5.920e-28
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 2 
Query:  266 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQ 538
            RFE+ELE + CLASP Y+H+LA SG L D +FL FL YL+Y+  PEYARF+ YPH L  LDLL  +  FR+E+A+V+FR+FVH+QQF  WQ
Sbjct:   39 RFELELEFVQCLASPAYMHHLATSGLLSDPSFLSFLRYLRYWSHPEYARFLVYPHCLYFLDLLCESEGFRREMANVAFRNFVHEQQFYGWQ 129
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A7S3QJ33_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ33_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.660e-26
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 2 
Query:  266 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQ-YFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGKR 550
            RFE+ELE +  LASP YLH+LA  GY  D AFL +L YL+ Y+ RPEYA++I+YPH L  LDL +    FRKEI+ V FR+FVH+QQF++WQ+  R
Sbjct:   77 RFELELEFVQSLASPAYLHHLATQGYFQDEAFLTYLRYLRSYWTRPEYAKYITYPHCLFFLDLAIEKEAFRKEISQVGFRNFVHEQQFMNWQYRSR 172
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A2P6TGR1_CHLSO (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGR1_CHLSO)

HSP 1 Score: 112 bits (281), Expect = 1.160e-25
Identity = 54/109 (49.54%), Postives = 80/109 (73.39%), Query Frame = 2 
Query:  221 RRRCAPQLGMEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGK 547
            RR    ++G  G+  RFE+ELE ++CLA+P YL++LAQ+ Y +D AFL +L+YL Y+++P+YARFI YPH+L  LDLL   P FR +IA+ ++++ VH QQF  WQ+ +
Sbjct:    8 RRADEEEVGCSGM-RRFELELEFLHCLANPGYLNWLAQNRYFEDEAFLEYLKYLLYWRQPQYARFIVYPHALYFLDLL-QTPEFRAKIANPAYKEMVHTQQFFFWQYAR 114
[Close]
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Match: A0A6V2LYR4_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LYR4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.920e-25
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 2 
Query:  266 RFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKRPEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQF 541
            RFE+ELE + CLASP YLH+LA+S  L   +FL +     Y+KRPEY RFI YPH L  LDL++ N  FR+E+ +V FR+FVH+QQF  WQF
Sbjct:   50 RFELELEFIQCLASPAYLHHLAESNVLSSPSFLSYXXXXXYWKRPEYVRFIIYPHCLYFLDLILENETFRREMGNVGFRNFVHEQQFYSWQF 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig103.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L203_9PHAE1.130e-5788.79Mediator of RNA polymerase II transcription subuni... [more]
D7FV80_ECTSI1.770e-3788.31Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA5.220e-3563.11Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA3.230e-3366.32Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK3.940e-3160.82Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2XM67_9STRA1.230e-2859.78Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2EVA4_TRICV5.920e-2860.44Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3QJ33_9STRA3.660e-2657.29Mediator of RNA polymerase II transcription subuni... [more]
A0A2P6TGR1_CHLSO1.160e-2549.54Mediator of RNA polymerase II transcription subuni... [more]
A0A6V2LYR4_9STRA2.920e-2556.52Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig103contigS-latissima_F_contig103:307879..313996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue5.6e-33
Seed eggNOG ortholog2880.D7FV80
Preferred nameMED31
KEGG koko:K15153,ko:K15446
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000428,GO:0000578,GO:0003002,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007399,GO:0007406,GO:0008150,GO:0008152,GO:0008285,GO:0008595,GO:0009058,GO:0009059,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009891,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010721,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035282,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045935,GO:0046483,GO:0048145,GO:0048147,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060173,GO:0060255,GO:0060284,GO:0061695,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0071704,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsCOG5088@1,KOG4086@2759
EC2.1.1.225
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03021
Exons4
Model size1655
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig103.261.1prot_S-latissima_F_contig103.261.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig103 308900..313749 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.218017-UTR-S-latissima_F_contig103:307878..3088991622815392.218017-UTR-S-latissima_F_contig103:307878..308899Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig103 307879..308899 -
1693924856.7295017-UTR-S-latissima_F_contig103:307878..3088991693924856.7295017-UTR-S-latissima_F_contig103:307878..308899Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig103 307879..308899 -
1622815392.2883818-UTR-S-latissima_F_contig103:313749..3139961622815392.2883818-UTR-S-latissima_F_contig103:313749..313996Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig103 313750..313996 -
1693924856.7801135-UTR-S-latissima_F_contig103:313749..3139961693924856.7801135-UTR-S-latissima_F_contig103:313749..313996Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig103 313750..313996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.2338917-CDS-S-latissima_F_contig103:308899..3090551622815392.2338917-CDS-S-latissima_F_contig103:308899..309055Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 308900..309055 -
1693924856.7397254-CDS-S-latissima_F_contig103:308899..3090551693924856.7397254-CDS-S-latissima_F_contig103:308899..309055Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 308900..309055 -
1622815392.2558167-CDS-S-latissima_F_contig103:309373..3094311622815392.2558167-CDS-S-latissima_F_contig103:309373..309431Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 309374..309431 -
1693924856.751013-CDS-S-latissima_F_contig103:309373..3094311693924856.751013-CDS-S-latissima_F_contig103:309373..309431Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 309374..309431 -
1622815392.2676885-CDS-S-latissima_F_contig103:310663..3107601622815392.2676885-CDS-S-latissima_F_contig103:310663..310760Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 310664..310760 -
1693924856.7605572-CDS-S-latissima_F_contig103:310663..3107601693924856.7605572-CDS-S-latissima_F_contig103:310663..310760Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 310664..310760 -
1622815392.2784839-CDS-S-latissima_F_contig103:313673..3137491622815392.2784839-CDS-S-latissima_F_contig103:313673..313749Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 313674..313749 -
1693924856.7697673-CDS-S-latissima_F_contig103:313673..3137491693924856.7697673-CDS-S-latissima_F_contig103:313673..313749Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig103 313674..313749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig103.261.1

>prot_S-latissima_F_contig103.261.1 ID=prot_S-latissima_F_contig103.261.1|Name=mRNA_S-latissima_F_contig103.261.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=129bp
MEGVGTRFEVELELMNCLASPEYLHYLAQSGYLDDSAFLRFLEYLQYFKR
PEYARFISYPHSLAMLDLLVNNPNFRKEIAHVSFRDFVHQQQFLHWQFGK
RPPQPTTPEEQQQQQQEQQQQQQQQQQK*
back to top

mRNA from alignment at S-latissima_F_contig103:307879..313996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig103.261.1 ID=mRNA_S-latissima_F_contig103.261.1|Name=mRNA_S-latissima_F_contig103.261.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6118bp|location=Sequence derived from alignment at S-latissima_F_contig103:307879..313996- (Saccharina latissima SLPER63f female)
GCTCTGTGACGGACGTACTGCCACGAACTTGTGGAGCTGCAGCCATTGCA
CTTTGCTTTGTATCTACGCCGTGGCCTGGGAGCACGCAAACGACCTCCAA
ATCGTGTCAAGCCGAGAGGGAAGGAGTTGATTGGACGTATCACACCATCT
CAGCAGCACAACAGCAAACGTTTGAAAGCATTTATTTGAAGTTTCCTATA
GTACACGCACTGCCGGAAGGCGGAGGCGCTGTGCGCCGCAGCTAGGGATG
GAGGGAGTGGGAACGCGTTTCGAGGTGGAGCTTGAGCTCATGAATTGCCT
GGCGAGTCCAGAATACCTTCATTGTGAGTTACACCTACCACCCCCCACCC
CCCCCGATGTACGAGGAGGTAAACGCTGTTGCTCGTACCGCGCTTCCACG
TCGTACCGGCCTGCTCTACGTTCGTACTGTCCTGGAAACGACGCCTATCG
TAAAGGGCTCCTATCGTAGGTTGGCCAACGTTGTTGGTGTTCGATTGCGA
CTTGCCATGATGTCGGCACTACTCGTAACCCACTAGTGCTACTTTCTGTA
ATTCGTACATTGCACGACTGCTCGTGTTTTTTTTGCTGTATCCAAAGCCT
ATTACTACAAGCAGTCTGAGGTTTTCTAGAAATCCAAATAGGGCTGGACC
TTGGTATTTTATACAAGGGCTCCGCTGCGCGGGCGGCTAACGCCGCCCGC
TACGCTCGCGGAAGGAAGAATGGAACCAATATGTGAAAGCGTAAAACAGG
ACATATCATTATTTTAAGCGGCACTGCGACTTGATAATTCCCAAGAGCCT
CAATATATAGTATGACGGCAAATACCGGACCAGAAACTAAATGGGAAATA
TGCTACAGTATAGTTTCAACACGAAATAGATCTGCGAAGAAGCCAAAGCT
CCGCTCCGCCTCGTACGCTCGCGAAAGTATAGGGCAAAAGAGTCCACGAT
GTGGTGCAACCGGACGAACGACTTAAAAATGCCAAGAGAGGATTCATGTC
AATGCAGCGAAATATCTTTTTACTGCTGTATCTCAACTAACGAACGTAGA
GCACCACGCCTACCCGCTGTAATCGTCAAACCTAACTCACTCATGCCCGA
GATGAACATGTCACATATGGCAGAACCTACCTATACTGCTGTAAAGATTT
TACTGAAGAGAGAGGCACATCACGGTACAGCACCTGTCCGCCCTGCCTTA
TCCACGGAACTCGCACGGCTACCCAACAGCGCTGCGCTGCATAACACCTA
CTGCCTGTACATCCGTAAACGACCGAACGTAAGTACCCGCCTCGACTCAC
TGCTGGTATTGTACTGCAGTATACACCCAAATGAACGAAAACAAACCTAT
CCGCATTATCTTTTTTTTATATGAGCGAAGCTTGATAGGAAATCACATAC
TAAAGTGCTGCGTATTTTATTTTTCGAACGTCGAGGTTCTATCAGCCCAT
CGTTAGCTCCCTGCCATCGCCTCGCTAACGCACCTCTTCGATCGTGACAG
ACGCGAATCCTATCCATGAAAACGGCGACCGCGCTCAACTGCCGACCCTC
CCTCTACTGGGCAGCGTCCCACCCGATCCGCCGTCGATAGCGCCGCGCCC
CTCCCCGTTTGCCATTGATTCAAGTCACATAGACACCATAACAATGAAAA
AAAAGCTGAGGCAAAACTGCAATAATCGCGAATATGCGAAGAAAAAAGAA
AGCAAAGAAGGAACTTCGGTAAGCACAGTATCTTCTGCTTGCGGCAATTA
GATGGCTGAGAGTGCGGTGATGTACAACGCTATTGCCGAGGAAAGCTTCC
GAACCAAAGATCAAGGTATTTATGTTGATATTTTAAGAGATTCAGCCCGA
GTACTTCGCATGATATAACGTATGTACCCACATACTATAATATACGAATC
TGATCCTTAAGTAGAAATCTTCCGAAGGTAGCTATTTATGCACATCGGGT
TTGGTCTACTTAAGGGTTGTTGGTTTACGCGGCTGCCATCAACTTAGAGT
GTATTCCCAGCCACAGCATTACCGAGAGCAAACCTGAAATTCTTCTCAAA
TCTCATGCATTCCACGCCGTCCAGTCAACCTAGAGTCCTTACCAGCACAG
CAGTCCCAGCCGCGACAACTGGCAGAGGGTTCGGTTCGGGTTCGGTCGGA
GGGTCGGACTTCAAGCTGCCCACAGTAAACTCCGTATATACTATATCAAC
GGTGCTGTCCTCACCGCCATCTATGTCCCGCTGCGTGGATCCGAAGAGTG
TACTTGGGACTTGCTCGTCTGACTACCCCCCCCGGCTGGCGAGGGTCCTA
CTCGCTGGAGGGCACCCTGCCGGAGGACCAATAGCTCTTTCCAACGTTAA
TGGCTCCTGATCCACGCCCGGTTGATACGTAGCACGAACTAATAGGTTCA
TTTTGGGTCATGTTTCGAAGGCTATTCCTGAGTCTCAGGGGTGGCTGATT
GACCCCGTATAAATGAGGAAACACGGACTGAAACATGGACCGAGTGTATG
GCCTTCTCTCCTCTCTCTTCTGTTTTGCGTGACCCCACGCAACGGTCCTC
GCTGCGGGGGGCGGCCAACGTGTTTCTGTGGGATTTTTCCACTATAGCTG
AGCGGTTTATTAGTGAGGCGTATATCACTTGCGTTTAACGTACCTCGTCA
GAAGTCGTCAAAAGCACTGGCAGCGGTAATGCCTGGCACCTCTATCCACT
ACCTTAACGTTAGGTAATTCACCTCAAACCAGTACAACAGTAGTACGTAG
CGCAACTAAAAATGATGAAGCGATACGTACGAGTTGCAAGTTACAACTAC
TTGACGCATTTCTGTCGACGATCCATGGTGCCAAGACTTCCAGACGGTTT
ATATTAAGTGCGGCACACATAATTACATACCTGGTATATACGTGCACCTG
TTATATTCTCCTAATGTTTTGACTGCTAACTACAATACATACTACCTAAT
TTTCGGGCATGATACCATTGTCGATATACAGATTCCACAACAGTACTGAC
TTTGCTTGTCAAGCTTAGGCATCGTCTATGCCCATCTGGCGACCCAAAAA
GCAAACACTGCGACGAACAACAGCAGTATAGTATTGTATATCAGTATTCG
AAAATCATCGTAGCTGGTGTTGTCTTTCGGCACCACGTCTCAAGCTTTCT
CATCACTGCTGAATGCGGTATTTTTCGTATGTCTGTTGCCTGTTGCCTGT
TGCCTGTTGCCTATTGCCTTTTTCCTCTGCTCACAGATTTAGCGCAGAGT
GGATACTTGGATGACTCCGCGTTTCTCCGCTTTTTGGAGTATTTGCAGTA
CTTCAAGCGCCCGGAGTACGCGAGGTTTATCTCGTGAGACCGCCGGCAAT
CAAACCATTACAACAGCAGTTTCCGAGCGTGCCGTGTTCTCTTTATAAGT
CCCACCGCATTCCTTGTCTCATAATTTTTGGATTTTGCAAGTGTTTTTTT
GGTCGACACCACGTCTTGTTAACTTACAGTGCTAGCGCCAATCCGAAAGC
GGTGCGCTGGATATCGCTAAAAATTCCACTATACAAGTGCCTTGTTGCGG
TGACGAAGGCGTGACGACGCGTGGCAAGACGAGCTCTATGATTTTCATCG
GTAGAGCCTATGATTTCATCGGTAGAGCTGCACGGAAATGACTCTAAATC
TCTCCAAGAAACATACAACATTCGTGTTGATTTCGAGGTCAACTGGCGTC
CGGTAAAGCCGGACTTGTACTGTACTTGTAGTAATACGAAGTAGACTCTT
AATATTAACAGGGTACTAGCTTGTCCCGATGGCTCACCAACCCCGACCCG
AATCACAGCACACTTTCCCTACTTTGTTTGCAGGTGCAGGTTCAGACATT
TACGTTGAGTTAACCGTATGTGATCGTGGTGCAGGAAGGTGACAATTCGG
CCCCCGATTGTGGTACGTGACTTGTGGCAAGGCCTAGGCCCTTCCACGGA
TGATGTTGCTTGGTTGTTCGGGACGGTTTGGAGTTACGAGTACTCCGTCC
GGTTTGCCAATAACCAGTACCGGCTCTGGGTGTTTCTGCCGTAGTGTGTG
AATCCTGGCAACAAAGCACAAGAACTTGCGCCTCTTGTGGCCATATCGTT
TCGAAGTGGGTGCGTACATATTTATATGGTACTACTCTGTCACTGTCAAT
AGTGAAGACTGCAGCTACAACATCACGCAAGGGCTCCTTTTCTTCTTTCT
TCAGTCCACCCGTAACTAGTCCGCGATGGCGTGCCCGCAACATGATGTGC
CGCCAAAATCATACGCAAGCGTCCATAGGGGCATTGCAATCAGAGCGTGA
TATGTTTTATAGTATATACATGCCTGGTATTATACCTGATATATATCGCT
ATGCGTGAACGTGTATCCTGCCGATGAAGAAATGACACCTTTAGTAGGCG
GGCCTGTCACATCGAACACCATTGTGTGGGTGATGAACCCCTTCCGCCGT
AACTCCAACATCGGAAGGTGCACATGATCCTTGATCTAGTGACCGTGCGA
TTGCCATGCTGACTACTCGTACGGTATTTGATACTCCTGTACGTATTGCT
GTTGCCGTCTCTCAGGTACCCTCACTCTTTGGCTATGTTGGATCTTCTAG
TCAACAACCCTAACTTCCGAAAGGTGAGTGGGGTCATGTCGACGATTGCA
TGTCAAGGCTCAGTGCACGCCTTCGACATTTAATCCCTCAGGATTTACTC
GATGTTCTGCGTGTATTATTACTGCAGTATTGTGCCCAGTTGTGCCCGTG
CGCCGTTCTGCAGGGTTGGCACCGACGATAGGAATGTGCGATGACCTCCA
ACGATGGCATGTGACGCTAACGAATGAGCACTGTCGGCTGTAGCTCTTAC
GAAGGTTCGTTCCCTGTTTGCAAGCCCCATAAACCCCACCCTTGACAATG
CATCGCGCACGTTTTGCCCTCCGGCCTTGATGCTTGCGCAGGAGATTGCC
CACGTCAGCTTCCGAGATTTCGTTCACCAACAACAATTCTTGCATTGGCA
GTTCGGCAAAAGGCCCCCCCAACCTACTACGCCCGAAGAGCAGCAGCAAC
AACAACAAGAACAGCAACAACAGCAACAACAGCAGCAGCAGAAGTAACAG
CGGCGACACAACTTAAGCTGCGCTATGTGCTTTGAAGCAGGGAACACACG
CTCGGCAGATCGAAGGATTTCCCGCTCAGGCAGCGTATCATATGCCTTTT
CTTGAGTTGCCCCGTGCGGTATTTCTGTAGCTGTACTCGCGTTTGTTTGG
TGATGTGCGCTGCCCGCAGCACGTGTGCTTACGGAATTGGGTTAGGGTTG
GTGATGCTTCGCTGTTTGCACGAGTAGCCAGAGCTATTAATAGTGTCACG
CCACATTTACTTGGCGATTCTGCTTGGGACAGCTTTTTTTGGCATCGATC
CCGATCTGCATGGTATACCGTATACCGCTATGTCCCGGTATCGTTTGGTG
CTGGGTTCCAGGTTGAACGTAGTAGGCCACTACAGTATATAAGCATTTGT
AATGTTTTTGGAGTATTGACAATGCGGAAGAGGCCTACTATTACTACTTG
TTTTGTCCGTCAAGGACTGTTGTGAAGAGCTGCTGCCAGCTCTTCGATTT
GTATGAAAATATCTGTCAGTTGAGTTTATCTCGAAAACACCATTATTACA
TTATGAATTGGCCGCGGCATGACCTGAAATATTGCTGGTGCCCATGACAT
AGCAATGGTAGAGAAATGGCCAGTAATACAGTGGTTACCTCTAGGTGAAG
ACATTCGGTCAAACGGCTTGTCACGAACAAAATTCCCTAAACGCGCTCTT
GTCTTAAGTCGGGTCTGTAAACCTCCGCCCACGAAAGCACCCCAAATCCT
AGGCGCGGGCGCCATAACAGAGCGGCCTACCACCATGCCTTACGCAGCGG
GTCTGCCCGGAGTAAGATCAATGTGCTCTCGGGAAAATAGTAATCTGTAG
TTAAGAGTGCTTTTTCGAGCGTGTCACGGGGCGCGGGTACCCACTACTAC
TGGGTACGACGTATGTATACGTTTACGCCTTTCCTTCCCGAGTTCCGACC
GGTCCTGCTGAACATAACAAACGAGTCGCAAGTCGACGAGGGAAGAAAGT
GCTGAAATCTTCTCGCGA
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig103:307879..313996-

>mRNA_S-latissima_F_contig103.261.1 ID=mRNA_S-latissima_F_contig103.261.1|Name=mRNA_S-latissima_F_contig103.261.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=774bp|location=Sequence derived from alignment at S-latissima_F_contig103:307879..313996- (Saccharina latissima SLPER63f female)
ATGGAGGGAGTGGGAACGCGTTTCGAGGTGGAGCTTGAGCTCATGAATTG
CCTGGCGAGTCCAGAATACCTTCATTATGGAGGGAGTGGGAACGCGTTTC
GAGGTGGAGCTTGAGCTCATGAATTGCCTGGCGAGTCCAGAATACCTTCA
TTATTTAGCGCAGAGTGGATACTTGGATGACTCCGCGTTTCTCCGCTTTT
TGGAGTATTTGCAGTACTTCAAGCGCCCGGAGTACGCGAGGTTTATCTCA
TTTAGCGCAGAGTGGATACTTGGATGACTCCGCGTTTCTCCGCTTTTTGG
AGTATTTGCAGTACTTCAAGCGCCCGGAGTACGCGAGGTTTATCTCGTAC
CCTCACTCTTTGGCTATGTTGGATCTTCTAGTCAACAACCCTAACTTCCG
AAAGGTACCCTCACTCTTTGGCTATGTTGGATCTTCTAGTCAACAACCCT
AACTTCCGAAAGGAGATTGCCCACGTCAGCTTCCGAGATTTCGTTCACCA
ACAACAATTCTTGCATTGGCAGTTCGGCAAAAGGCCCCCCCAACCTACTA
CGCCCGAAGAGCAGCAGCAACAACAACAAGAACAGCAACAACAGCAACAA
CAGCAGCAGCAGAAGTAAGAGATTGCCCACGTCAGCTTCCGAGATTTCGT
TCACCAACAACAATTCTTGCATTGGCAGTTCGGCAAAAGGCCCCCCCAAC
CTACTACGCCCGAAGAGCAGCAGCAACAACAACAAGAACAGCAACAACAG
CAACAACAGCAGCAGCAGAAGTAA
back to top