prot_S-latissima_F_contig10.16.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig10.16.1
Unique Nameprot_S-latissima_F_contig10.16.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length936
Homology
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 7.350e-28
Identity = 204/606 (33.66%), Postives = 238/606 (39.27%), Query Frame = 0
Query:   10 GGWRH-GEFSLLGQMHSLLPRRYRKNLSALIVVRATPVLGTFFDFAKLFLSPKFYRKLEYCDDSGELSERLSKEIVENLPEGAVSWGRSTTRRRPARESRTPRSXXXXXXXXXXXXXXXHGGRPPSPVHVARTFGGGLQVQGDENWTPPPMPXXXLQPTPGTPSVLPTTGGARGVSICEKHACVGSGSAXXXXXXXXXXXXXXXXXXXXXXKTSGNSCSSARQPRTTLNGVAVNGNGYFNGSTXXXXXXXXXXXXXXXMSSNGSNG---------------NGGAKAXXXXXXXXXXXXXXXXXXSVRPVTPASASRKSISSPGGGVFASVPTGSST--GTYGISPSSSAGGTPARRV-RHAGSAPMAHSSSHRRGPSG------GDGTGVVASGGVVFCTTP-GGPLSVGRSGXXXXXXXXXXEGEGFRENCGGPTHRRSSMSNAPPSPWAADRHSPRASPRAVLTPRGTT--MTSWGGSPV---GERSGPPTPTTGGTQGFA-----PAATTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----NAIAM-AAGSGWSRSGFQAAA----SGLIERAEARA--AASQKTK 567
            GGW   G FS+LG+MHSLLPRRY+KNL  L+V++ TPVL +FF+FA LFLSPKFYRKLE+CD   EL+ +   EI+E                                                              VQGDE WTPPP+P X LQ  P   S L   GG +G +I E+    GS                           +   C+++   R T+ G     +G  +  T           XXXX                       N G                     S    TP    R S SS GG  FASVP G +T    +GISPS S G   A R  R  GSAP   S  +RRG S       G G G     G V  TTP GG     RSG    XXXXXX                     A P   A+ R SP    R V+TPRGT+   +SWGGSP    G RSGP TP   GT   +     P    RK                                XXXXXXXX     NAIA  AAGSGW R GFQ AA    +   ER+E R   AAS+KTK
Sbjct:   83 GGWLSWGRFSMLGEMHSLLPRRYKKNLKGLVVLQHTPVLHSFFEFANLFLSPKFYRKLEFCDGVAELASKFPSEIIE--------------------------------------------------------------VQGDETWTPPPLPPXPLQSAPRPASPLLRNGGTKGAAIKERSRR-GSLDKNFSTSSAAASGTTMTTDPNTPSPVAAAPCTASSASRVTILGNTTPASGNIDAGTAVKIRKTRSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGRGVITTAAELFCDSPCWALEASAL-ATPTQRER-SYSSFGGRAFASVPVGGNTIIENHGISPSGSTGSFSAMRSQRTLGSAPTHFS--YRRGSSTSGCWERGKGGGASGRNGGVSPTTPKGGTRHHRRSGFSTTXXXXXXXXXXXXXXX-----------MAVPGERASPRPSPSPRGRGVITPRGTSGQRSSWGGSPCSGGGWRSGPTTPRQNGTTTVSFVAPSPGTPARKGPGWQARGGSSPLSKGHRHVTQEQQFSSCPGGXXXXXXXXXXXACNAIAKTAAGSGWVRPGFQLAAVASEATAAERSEGRGKVAASRKTK 610          
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.600e-12
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 0
Query:   17 FSLLGQMHSLLPRRYRKNLSALIVVRATPVLGTFFDFAKLFLSPKFYRKLEYCDDSGELSERLSKEIVENLPE 89
            +S LGQ+H  LPRRYRKNL  LI+V  + VL  FF F +LFLSPK Y K+ +C+   +L E L +E V  LPE
Sbjct:  376 YSFLGQLHGALPRRYRKNLQRLIIVHPSQVLKMFFMFGRLFLSPKVYNKVHFCEHVADLLELLPREAVALLPE 448          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL35_ECTSI7.350e-2833.66Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
A0A835Z007_9STRA7.600e-1253.42Rho-GAP domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036865CRAL-TRIO lipid binding domain superfamilyGENE3D3.40.525.10coord: 11..94
e-value: 7.4E-9
score: 37.4
IPR036865CRAL-TRIO lipid binding domain superfamilySUPERFAMILY52087CRAL/TRIO domaincoord: 12..85
IPR001251CRAL-TRIO lipid binding domainPFAMPF13716CRAL_TRIO_2coord: 8..92
e-value: 2.9E-12
score: 46.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig10contigS-latissima_F_contig10:564280..607144 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig10.16.1mRNA_S-latissima_F_contig10.16.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig10 556931..607210 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig10.16.1 ID=prot_S-latissima_F_contig10.16.1|Name=mRNA_S-latissima_F_contig10.16.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=936bp
MSMLCGARGGGWRHGEFSLLGQMHSLLPRRYRKNLSALIVVRATPVLGTF
FDFAKLFLSPKFYRKLEYCDDSGELSERLSKEIVENLPEGAVSWGRSTTR
RRPARESRTPRSSSGGDGGGGVVTAGGHGGRPPSPVHVARTFGGGLQVQG
DENWTPPPMPPPPLQPTPGTPSVLPTTGGARGVSICEKHACVGSGSAGGG
SGGGAGAGGGGGGGGGGGGKTSGNSCSSARQPRTTLNGVAVNGNGYFNGS
TNGYFSGNLNGSAHGNMSSNGSNGNGGAKAGFAFGGKGEGGGVGGGSGSV
RPVTPASASRKSISSPGGGVFASVPTGSSTGTYGISPSSSAGGTPARRVR
HAGSAPMAHSSSHRRGPSGGDGTGVVASGGVVFCTTPGGPLSVGRSGGGG
GRRRRRREGEGFRENCGGPTHRRSSMSNAPPSPWAADRHSPRASPRAVLT
PRGTTMTSWGGSPVGERSGPPTPTTGGTQGFAPAATTRKSSRSSGSLSAQ
GAGGAGGGSGAGGGGGGGGSGSVGSAGAANAIAMAAGSGWSRSGFQAAAS
GLIERAEARAAASQKTKGSSPGQAHPGQPQPQAQGKMQPPRSPRPPSRES
PRAKWPADGRTDSWGSDKLVKTTGATTSGAPSEPKKRLSQNTPSYSRRSS
HDSPLSSCNNVDEEELAALEREVMMTQCARAASSAASGGGGGGGGGSSST
GGSGAISSIPSGTTATSKASSARETSRGSGGVSGGGGGGGGGCDGGGAGG
DKGNCCGPADHPAPLRRRGSKTHSGAKAHAASKSHSASKSHASTSSAWGG
VASAAVRDAVGGGQITGSATVPPARRPISTSARISRESRRSSLTAVRAAG
ADPTSSVGGGSVGAGGGDGGGDGGGGGGTGGGTGGGTPPLDAAGVFDNII
AGAAGHASVPGRSGGGAAGTSGSSGQSAAATKAHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036865CRAL-TRIO_dom_sf
IPR001251CRAL-TRIO_dom