mRNA_S-latissima_F_contig10.16.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI) HSP 1 Score: 326 bits (836), Expect = 9.490e-89 Identity = 196/312 (62.82%), Postives = 219/312 (70.19%), Query Frame = 2
Query: 2873 SQHRNDAGGMRRR*GA*GGVAESG----LGCAAVAEAEKRAAG----------ERGGSGRGERSGSSSNNVRVRRRCHRIPREGERLVFGVPLVKLMQVTPGEDVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESEN------ECLS--LTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLFED 3742
S+HRNDAG +R A G L A AEA AAG +R GR R+GSS R C + VFGVPL+ LMQ GE VPWV+KRFV FLSKFGLESVGLFRLAGDG+D A LR ALD+G QVCWDP + ++ +C S L DVNMVAQLLKAFFRELPEPLVPFSAYSKV+AIAKAAGVADARWVQAMK+ILW IP ANYNCLR FLF FLR+VA HS+TNRMTSENLAIVWAPNL+RP+DDDPFA+L+DLRFQIETVRWMVDC +QLF+D
Sbjct: 1036 SKHRNDAGEIR--------CAMRGHRLSLKHALDAEAAAAAAGSAAKGQEVSVDRARDGR-SRAGSSVQRRRSLSAC------SKDKVFGVPLIGLMQ--QGEQVPWVVKRFVDFLSKFGLESVGLFRLAGDGMDCADLRDALDNGKQVCWDPIDPIDEAEGSTGATDCASSSLMDVNMVAQLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLR--------FLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFAVLRDLRFQIETVRWMVDCCDQLFDD 1322
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE) HSP 1 Score: 315 bits (807), Expect = 3.360e-85 Identity = 186/303 (61.39%), Postives = 210/303 (69.31%), Query Frame = 2
Query: 2876 QHRNDAGGMRRR*GA*GGVAESGLGCAAVAEAEKRAAGERGGSGRGE-------RSGSSSNNVRVRRRCHRIPREGERLVFGVPLVKLMQVTPGEDVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECL--------SLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLFE 3739
+HRNDAG +R A G + E AA G + +G+ R G S V+RR R + VFGVPL+ LMQ GE VPWV+KRFV FLSKFGLESVGLFRLAGDG+D A LR ALD+G QVCWDP + ++ E SL DVNMVAQLLKAFFRELPEPLVPFS KV+AIAKAAGVADARWVQAMK+ILW IP ANYNCLR FLF FLRKVA HS+TNRMTSENLAIVWAPNL+RP+DD PFA+L+DLRFQIETVRWMVDC +QLF+
Sbjct: 988 KHRNDAGEIR--------CAMRGHRLSLKHALEAEAAAAAGSAAKGQEVAVERARDGRSRAESSVQRR--RSLASSKNKVFGVPLIGLMQ--QGEQVPWVVKRFVDFLSKFGLESVGLFRLAGDGMDCADLRDALDNGKQVCWDPMDPIDETEESTKATVCASSSLMDVNMVAQLLKAFFRELPEPLVPFS---KVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLR--------FLFEFLRKVAMHSSTNRMTSENLAIVWAPNLLRPQDDHPFAVLRDLRFQIETVRWMVDCCDQLFD 1267
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA) HSP 1 Score: 193 bits (491), Expect = 3.480e-46 Identity = 104/214 (48.60%), Postives = 139/214 (64.95%), Query Frame = 2
Query: 3110 VKLMQVTPGEDVPWVLKRFVGFLSKFG-LESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESEN--ECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLFED 3742
V +M +VPWV+ R + FL G L++VGLFR+AGDGV+ LR A++ QV WDP+E ++ L L D +VAQLLKA+FRELPEP++P++ Y +V+AIA+AAG +WV AMK ILW +P+A Y LR LF FLR VA SA N MT+ NLAIVWAPNL+RP D +PF L+DL+F +T W+++ +F D
Sbjct: 1067 VDIMAAVGQGEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRG--------LFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTD 1272
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A553QQX2_9TELE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QQX2_9TELE) HSP 1 Score: 111 bits (277), Expect = 6.800e-23 Identity = 69/194 (35.57%), Postives = 104/194 (53.61%), Query Frame = 2
Query: 3146 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYE 3727
P V+++ V F+ + GL VGLFR G L+ A D G + +D S TDV+ VA LLK + RELPEPLVPFS Y + + K + +Q ++ +L +P AN+N L+ ++ FL V ++S N+M+ +NLA V+ PN++RP+ +DP +I+ LR +E R V E
Sbjct: 82 PLVVEQCVDFIREHGLTEVGLFRQPGQATLVKELQEAFDAGEKPSFD------------SSTDVHTVASLLKLYLRELPEPLVPFSRYEEFLGCGKRIASEREKGLQELRILLHELPVANFNLLK--------YICQFLNDVQSYSNVNKMSIQNLATVFGPNILRPKAEDPESIIGGLRSTLEQQRRWVSMAE 255
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: H3CQ06_TETNG (Rho GTPase activating protein 24 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CQ06_TETNG) HSP 1 Score: 113 bits (282), Expect = 9.900e-22 Identity = 71/218 (32.57%), Postives = 117/218 (53.67%), Query Frame = 2
Query: 3092 VFGVPL---VKLMQVTPGEDVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLF 3736
+FG L V+ + + P ++++ V F+ ++GL GLFRL G L+ A D G + +D TDV+ VA LLK + RELPEP+VPF Y +++ AK G D V+ +K ++ S+P NYN L+ ++ FL +V ++S N+MT +NLA V+ PN++RP+ +DP AI++ + + ++ ++ LF
Sbjct: 37 IFGQKLEETVRYERRFGNKPAPMLVEQCVDFIRQWGLREEGLFRLPGQANLVKELQDAFDCGEKPSFDCN------------TDVHTVASLLKLYLRELPEPVVPFHKYDELLTCAKLLGKDDELGVKELKQLVQSLPPVNYNLLK--------YICRFLDEVQSYSGVNKMTVQNLATVFGPNILRPKVEDPVAIMEGTVLVQQLMAVLIGRHDALF 234
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A3P8WYQ1_CYNSE (Rho GTPase activating protein 24 n=5 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WYQ1_CYNSE) HSP 1 Score: 112 bits (281), Expect = 1.690e-21 Identity = 67/197 (34.01%), Postives = 110/197 (55.84%), Query Frame = 2
Query: 3146 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLF 3736
P ++++ V F+ ++GL+ GLFRL G L+ A D G + +D TDV+ VA LLK + RELPEP+VPF Y +A AK G D ++ ++ +L S+P NYN L+ ++ FL +V ++S N+M+ +NLA V+ PN++RP+ +DP AI++ + + ++D ++ LF
Sbjct: 147 PMLVEQCVDFIRQWGLQEEGLFRLPGQANLVKELQDAFDCGEKPSFDCN------------TDVHTVASLLKLYLRELPEPVVPFHKYDDFLATAKILGKDDEMGLKELRRLLESLPPVNYNLLK--------YICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKIEDPVAIMEGTVLVQQLMAILIDHHDVLF 323
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A5A9PH16_9TELE (Rho GTPase-activating protein 24 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PH16_9TELE) HSP 1 Score: 112 bits (280), Expect = 1.890e-21 Identity = 65/179 (36.31%), Postives = 104/179 (58.10%), Query Frame = 2
Query: 3146 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDL 3682
P V+++ V F+ + GL VGLFR +G L+ A D G + +D S TDV+ VA LLK + RELPEPLVP+S Y +++ AK + +Q +K++L+ +P AN+N L+ ++ FL V ++S N+M+ +NLA V+ PN++RP+ +DP +I+ +L
Sbjct: 156 PLVVEQCVDFIREHGLTEVGLFRQSGQATLVKELQEAFDAGEKPSFD------------SSTDVHTVASLLKLYLRELPEPLVPYSRYEEILVCAKKIPSDREQGLQELKSLLYELPVANFNLLK--------YICQFLNDVQSYSNINKMSIQNLATVFGPNILRPKAEDPESIIGEL 314
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: A0A3B3QBD8_9TELE (Rho GTPase-activating protein 24-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QBD8_9TELE) HSP 1 Score: 110 bits (274), Expect = 5.400e-21 Identity = 70/201 (34.83%), Postives = 112/201 (55.72%), Query Frame = 2
Query: 3083 ERLVFGVPLVKLM--QVTPGEDV-PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILK 3676
+R VFG L + + + GE P V+++ V F+ + GL+ VGLFR G L+ A D G + +D S TDV+ VA LLK + RELPEP+VPFS Y + + K + + ++ +K +L +P AN++ L ++ FL +V +HS N+M+++NLA V+ PN++RP+ DDP +I++
Sbjct: 38 KRRVFGQRLEETVVYERRYGEHAAPLVVEQCVAFIREHGLQEVGLFRQPGQATLVKELQVAFDTGEKPTFD------------SSTDVHTVASLLKLYLRELPEPVVPFSRYQEFLQCGKRVHLERRQTLEDLKKLLHELPVANFSLLH--------YVCRFLFEVQSHSHINKMSTQNLATVFGPNILRPKADDPESIIE 218
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: UPI001C8A42A5 (rho GTPase-activating protein 24 isoform X3 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A42A5) HSP 1 Score: 110 bits (274), Expect = 6.200e-21 Identity = 70/199 (35.18%), Postives = 110/199 (55.28%), Query Frame = 2
Query: 3086 RLVFGVPLVK--LMQVTPGEDV-PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAIL 3673
R VFG L + L + G+ + P V+++ V F+ + GL VGLFR G L+ A D G + +D S TDV+ VA LLK + RELPEPLVPFS Y + + K + +Q ++N+L+ +P AN+N L+ ++ FL V ++S N+M+ +NLA V+ PN++RP+ +DP +++
Sbjct: 31 RRVFGQRLEETVLYERRYGDHMAPLVVEQCVDFIREHGLTEVGLFRQPGQATMVKELQEAFDAGEKPSFD------------SSTDVHTVASLLKLYLRELPEPLVPFSRYEEFLVCGKRISSDREKGLQDLRNLLYELPVANFNLLK--------YICQFLNDVQSYSNINKMSIQNLATVFGPNILRPKAEDPESLI 209
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Match: UPI001E66A6FE (rho GTPase-activating protein 24 isoform X3 n=1 Tax=Salmo salar TaxID=8030 RepID=UPI001E66A6FE) HSP 1 Score: 105 bits (262), Expect = 8.330e-21 Identity = 63/176 (35.80%), Postives = 100/176 (56.82%), Query Frame = 2
Query: 3146 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAIL 3673
P V+++ V F+ + GL VGLFR G L+ A D G + +D S TDV+ VA LLK + RELPEPLVPFS Y + K + + A++++L +P AN+N L ++ FL +V ++S++N+M+++NLA V+ PN++RP+ +DP +I+
Sbjct: 54 PLVVEQCVDFIRERGLLEVGLFRQPGQATLVKELQDAFDAGEKPSFD------------SSTDVHTVASLLKLYLRELPEPLVPFSRYQDFLLCGKNISSERKQGLTALQHLLHELPVANFNLLN--------YICQFLNEVQSYSSSNKMSTQNLATVFGPNILRPKAEDPESII 209 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig10.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig10.16.1 >prot_S-latissima_F_contig10.16.1 ID=prot_S-latissima_F_contig10.16.1|Name=mRNA_S-latissima_F_contig10.16.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=936bp MSMLCGARGGGWRHGEFSLLGQMHSLLPRRYRKNLSALIVVRATPVLGTFback to top mRNA from alignment at S-latissima_F_contig10:556931..607210- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig10.16.1 ID=mRNA_S-latissima_F_contig10.16.1|Name=mRNA_S-latissima_F_contig10.16.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=50280bp|location=Sequence derived from alignment at S-latissima_F_contig10:556931..607210- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig10:556931..607210- >mRNA_S-latissima_F_contig10.16.1 ID=mRNA_S-latissima_F_contig10.16.1|Name=mRNA_S-latissima_F_contig10.16.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=5616bp|location=Sequence derived from alignment at S-latissima_F_contig10:556931..607210- (Saccharina latissima SLPER63f female)back to top |