mRNA_S-latissima_F_contig974.17492.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig974.17492.1
Unique NamemRNA_S-latissima_F_contig974.17492.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig974.17492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig974contigS-latissima_F_contig974:61884..62098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig974.17492.1prot_S-latissima_F_contig974.17492.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig974 61884..62081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.4640238-CDS-S-latissima_F_contig974:61883..620311622817376.4640238-CDS-S-latissima_F_contig974:61883..62031Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig974 61884..62031 +
1693926517.5658047-CDS-S-latissima_F_contig974:61883..620311693926517.5658047-CDS-S-latissima_F_contig974:61883..62031Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig974 61884..62031 +
1622817376.4768364-CDS-S-latissima_F_contig974:62055..620811622817376.4768364-CDS-S-latissima_F_contig974:62055..62081Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig974 62056..62081 +
1693926517.580405-CDS-S-latissima_F_contig974:62055..620811693926517.580405-CDS-S-latissima_F_contig974:62055..62081Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig974 62056..62081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.489086-UTR-S-latissima_F_contig974:62081..620981622817376.489086-UTR-S-latissima_F_contig974:62081..62098Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig974 62082..62098 +
1693926517.597761-UTR-S-latissima_F_contig974:62081..620981693926517.597761-UTR-S-latissima_F_contig974:62081..62098Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig974 62082..62098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig974.17492.1

>prot_S-latissima_F_contig974.17492.1 ID=prot_S-latissima_F_contig974.17492.1|Name=mRNA_S-latissima_F_contig974.17492.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=58bp
AVQKIVRVHFAVGEKKKLGPIFAAGENYFRPFSCDLFDNFLPNLFVAFFL
TVLYVRG*
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mRNA from alignment at S-latissima_F_contig974:61884..62098+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig974.17492.1 ID=mRNA_S-latissima_F_contig974.17492.1|Name=mRNA_S-latissima_F_contig974.17492.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=215bp|location=Sequence derived from alignment at S-latissima_F_contig974:61884..62098+ (Saccharina latissima SLPER63f female)
GCAGTCCAAAAAATTGTGCGGGTCCATTTCGCCGTAGGCGAAAAAAAAAA
GTTGGGGCCTATTTTCGCCGCAGGCGAAAATTATTTTAGGCCTTTTTCTT
GTGATTTATTCGACAATTTCCTGCCGAATTTGTTTGTGGCTTTCTTTTTT
GAGGGGACTGAGTTCAAATTTATGACGGTTTTGTATGTCCGTGGATGAAA
CAAGGCTTGAAAGGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig974:61884..62098+

>mRNA_S-latissima_F_contig974.17492.1 ID=mRNA_S-latissima_F_contig974.17492.1|Name=mRNA_S-latissima_F_contig974.17492.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=348bp|location=Sequence derived from alignment at S-latissima_F_contig974:61884..62098+ (Saccharina latissima SLPER63f female)
GCAGTCCAAAAAATTGTGCGGGTCCATTTCGCCGTAGGCGAAAAAAAAAA
GTTGGGGCCTATTTTCGCCGCAGGCGAAAATTATTTTAGGCCTTTTTCTT
GTGATTTATTCGACAATTTCCTGCCGAATTTGTTTGTGGCTTTCTTTTGC
AGTCCAAAAAATTGTGCGGGTCCATTTCGCCGTAGGCGAAAAAAAAAAGT
TGGGGCCTATTTTCGCCGCAGGCGAAAATTATTTTAGGCCTTTTTCTTGT
GATTTATTCGACAATTTCCTGCCGAATTTGTTTGTGGCTTTCTTTTTGAC
GGTTTTGTATGTCCGTGGATGATGACGGTTTTGTATGTCCGTGGATGA
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