mRNA_S-latissima_F_contig974.17491.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.230e-18 Identity = 65/187 (34.76%), Postives = 77/187 (41.18%), Query Frame = 1
Query: 397 GDGDCDLSNNTEECDYDGGDCCECTC------VSTTQYVCGVRSGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECACVSTSEFTCGENDGYDCVDPESSC 939
GDG+CD NNTEECDYDGGDCC CTC +CG + F+C+DP A C DD A PE T G + L+DG CD NNNEECGYDGGDCC C C+ + CG G+ C+DP + C
Sbjct: 105 GDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAF--------LPE-------------------------------------------VVKETCGGNIVH-------LADGDCDQINNNEECGYDGGDCCFCTCLDDF-YECGIR-GFACIDPSAEC 231
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.730e-17 Identity = 76/230 (33.04%), Postives = 96/230 (41.74%), Query Frame = 1
Query: 388 ASTGDGDCDLSNNTEECDYDGGDCCECTCVSTTQYVCGVRSGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLS-----------DGSCDSENNNEECGYDGGDCCECACVS--TSEFTCGENDGYDCVDPESSC-----------EELSVEGRSSAYRTAHTSSPVC 1005
AS GDG C NN E CDYDGGDCCECTCV Y CG + F+C+DP A+C DD A A DG G + EA I A C+ ++ DG C+ NNNE+CGYDGGDCCEC CV ++EF C E + C+DP + C E +E Y + ++ +C
Sbjct: 72 ASIGDGFCSDENNNEVCDYDGGDCCECTCVDAF-YPCGYVA-FACIDPSAACVDDDNITADIAESCHDGG--GYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAP--CVDDDVTEGMFEDCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTE---FACIDPTAPCVDDDDVTADALENCMIEYLGDGYCDTYNNNEIC 292
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 1.900e-17 Identity = 75/215 (34.88%), Postives = 89/215 (41.40%), Query Frame = 1
Query: 334 SNVVAMSSSSSPLLDCTEASTGDGDCDLSNNTEECDYDGGDCCECTCVSTT----QYVCGVR-SGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECAC-VSTSE-------FTCGENDGYDCVDPESSC 939
S+V A S SSS C +A GDG C NN EC YDGGDCCECTC + ++C SGF+C+DP A C+ +DG V+ EA S C L DG CD NNNE CGYDGGDCCEC C V T + CGE G+ C+DP + C
Sbjct: 19 SSVAANSLSSSG---CWDALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDG------------------------VTVEA----------------------------------------SQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGE--GFACIDPSAPC 164
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 7.990e-17 Identity = 74/208 (35.58%), Postives = 90/208 (43.27%), Query Frame = 1
Query: 397 GDGDCDLSNNTEECDYDGGDCCECTCVSTTQYVCGVRSGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTE--------------APTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPG--SLSDGSCDSENNNEECGYDGGDCCECACVSTSE-FTCGENDGYDCVDPESSCEELSVEGRSS 969
GDG CD NN EECD+DGGDCC CTC ++ Y C S C DP A+C S P ASDG+ + +TE + T ++ + + SS C G ++SDG CDS NNN C YDGGDCCEC C E + CG GY C+D S C S G SS
Sbjct: 232 GDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYS-MDCQDPNANCTTP--SPTPYCPWASDGYCDSYY-------NTEDCDWDGGDCCAYGCSSTTCLDPIYGCDSITTYYGDNDVSTSTFSTYLTSSDADSVSSGCFDGDWAVSDGKCDSGNNNAACDYDGGDCCECDCYDYGEVYECGVV-GYYCLDQTSLCYG-STSGESS 427
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.380e-16 Identity = 75/200 (37.50%), Postives = 90/200 (45.00%), Query Frame = 1
Query: 367 PLLDCTEASTGDGDCDLSNNTEECDYDGGDCCECTCVSTTQYVCGVRSG-FSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSST--ASSSCIPGS------LSDGSCDSENNNEECGYDGGDCCECACVSTSEFT--CGE-NDGYDCVDPE 930
P + A GD CDL N EC +DGGDCCECTCV T VCG G + C+DP D + A+AP +PTP T S APT + TAG ++ AS PG + DG CD +NN CG+DGGDCC C C +E CG NDGYDC DP+
Sbjct: 62 PDCEADTALVGDSICDLDFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDP------DAPQDCASAP-----------SPTPNTPS--APTSSDAIDV------------------------TAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRDPD 218
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.520e-16 Identity = 76/242 (31.40%), Postives = 104/242 (42.98%), Query Frame = 1
Query: 265 MKAQRYHSLGLAVLGSLLVLLSG-SNVVAMSSSSSPLLDCTEASTGDGDCDLSNNTEECDYDGGDCCECTCVSTTQYVCGVRSGFSCLDPGASCFVDDG------SNAATAPPASDGFPEGTLTPTPATVS-------TEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECACVSTS---EFTCGENDGYDCVDPESSC 939
MK LGL LG+ +++ S S+VVA +S D + G+G C++ NN EEC +DGGDCCECTC +Y CG G++C+DP A+C DD N +G + L T P+ ++ C G + +G CD NN+ EC YDGGDCCEC C S E+ C E + C+DPE+ C
Sbjct: 57 MKTSSNRWLGL--LGAAVIMWSSASSVVATTSDQFDACDAAQ-DIGNGRCNMGNNIEECGFDGGDCCECTCEDG-EYTCGQYYGYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYC-EPGSFACIDPEAEC 293
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.640e-16 Identity = 56/164 (34.15%), Postives = 66/164 (40.24%), Query Frame = 1
Query: 388 ASTGDGDCDLSNNTEECDYDGGDCCECTCV---STTQYVCGVRSGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECAC 870
AS GDG CD NN E C YDGGDCCECTCV S +Y GF+C+DP ASCF D TL + +C S+ +G C+ +NNN +CGYDGGDCCEC C
Sbjct: 14 ASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFDKD----------------FTL-------------------------------------------------DMADNCYHNSIGNGYCNCQNNNADCGYDGGDCCECTC 112
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 4.840e-16 Identity = 78/190 (41.05%), Postives = 100/190 (52.63%), Query Frame = 1
Query: 379 CTEASTGDGDCDLSNNTEECDYDGGDCCECTCVSTTQYVCGVRSGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECACVSTSEFTCGENDGYDCVDPE-SSCEE 945
C A G C +NN +C +D GDCC C C G + C++P +SC+ DD +A T P +D LTP P + TITXXXXXXXXXXX T + + S C + DG CD +NNNE+C +DGGDCCEC C +TS + CG ND YDC+DP ++CEE
Sbjct: 213 CRTADYNTGICTEANNNADCTFDDGDCCWCDCDHENCPPPGDED-YDCVNPDSSCYGDD-PDATTPAPVTD------LTPGPTPADS---TITXXXXXXXXXXXTLVDGAAAPVSE------TPSPTPSLSLCDDLRIGDGLCDDDNNNEDCLWDGGDCCECTCDTTSIYRCGAND-YDCLDPSGTTCEE 384
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 5.610e-16 Identity = 70/190 (36.84%), Postives = 85/190 (44.74%), Query Frame = 1
Query: 397 GDGDCDLSNNTEECDYDGGDCCECTCVSTTQYVCGVRSGFSCLDPGASCFVDDG------SNAATAPPASDGF-PEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECACVST--SEFTCGENDGYDCVDPESSC 939
G+G CD+ NN E C YDGGDCCECTC S R+ F+C+DP A C DD N A DG+ E TP A + T XXXX T P ++ DG CD NNNE CGYDGGDCCEC C + ++ C E + C+DP + C
Sbjct: 289 GNGWCDVDNNNELCAYDGGDCCECTCESLEDDDWACRNNFACVDPNAPCVDDDSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQNDVDDDWXXXXFACIDPEAACVNDDDITVDMFVNCE--YPVNVGDGWCDQGNNNEACGYDGGDCCECTCENERDEDYRCME---FSCIDPSAPC 473
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 7.230e-16 Identity = 65/198 (32.83%), Postives = 78/198 (39.39%), Query Frame = 1
Query: 373 LDCTEASTGDGDCDLSNNTEECDYDGGDCCECTCVST--TQYVCGVRSGFSCLDPGASCFVDDGSNAATAPPASDGFPEGTLTPTPATVSTEAPTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGSSTASSSCIPGSLSDGSCDSENNNEECGYDGGDCCECAC--VSTSE-----FTCGENDGYDCVDPESSC 939
L+C GDG CD NN E C YDGGDCCECTCV+ Y C S +C+DP A C DD TV + GS+ +G CD ENNNE CGYDGGDCCEC C + T + F G +G+ C+DP + C
Sbjct: 54 LNCFPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANS--ACIDPSAPCVDDDD----------------------VTVD-----------------------------------------MVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPC 186 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig974.17491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig974.17491.1 >prot_S-latissima_F_contig974.17491.1 ID=prot_S-latissima_F_contig974.17491.1|Name=mRNA_S-latissima_F_contig974.17491.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=266bp MKAQRYHSLGLAVLGSLLVLLSGSNVVAMSSSSSPLLDCTEASTGDGDCDback to top mRNA from alignment at S-latissima_F_contig974:27159..37274- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig974.17491.1 ID=mRNA_S-latissima_F_contig974.17491.1|Name=mRNA_S-latissima_F_contig974.17491.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=10116bp|location=Sequence derived from alignment at S-latissima_F_contig974:27159..37274- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig974:27159..37274- >mRNA_S-latissima_F_contig974.17491.1 ID=mRNA_S-latissima_F_contig974.17491.1|Name=mRNA_S-latissima_F_contig974.17491.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1596bp|location=Sequence derived from alignment at S-latissima_F_contig974:27159..37274- (Saccharina latissima SLPER63f female)back to top |