mRNA_S-latissima_F_contig1077.652.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.750e-44 Identity = 80/182 (43.96%), Postives = 112/182 (61.54%), Query Frame = 1
Query: 82 FDSEDFVFDLQGAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGR-LIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIAMLPEGTIQAALALGSDEAYAIIAGLPEGVVQGEKECLKRCGL 624
F+ EDFVF L G EP+ + ++ A LG +P L G+G++ ALV+++ C +NLPH HPRA E Y+I E +R AFVEEN G ++ND+ +G V P GL+H+ QN+GC P TFLAA ++ DPG +T TT+ LP IQA+L +I LP+ ++CL+RCGL
Sbjct: 37 FNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEH---LRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFE-LPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGL 214
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A836CNU2_9STRA (RmlC-like cupin domain-containing protein n=7 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNU2_9STRA) HSP 1 Score: 147 bits (370), Expect = 2.150e-40 Identity = 90/216 (41.67%), Postives = 122/216 (56.48%), Query Frame = 1
Query: 13 PSRSLRLNDKGDVDVP---RLDFRQQF-DSEDFVFDLQGAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTT---QGIAM---LPEGTIQAALALGSDEAYAIIAGLPEGVVQGEKECLKRCGLDY 630
P + +L D+ + R FR QF D+ DF FDL G++ G+ + + +P L+GE V+ + +EPCG+NLPH HPRA E Y++ + ++ V AFVEEN GR I N I G+ A P GL H NMGC+PAT +AA S D GV T TT +G+A L EG + AAL + D+ +I G P+G G EC +RCGL Y
Sbjct: 29 PKKYRQLTDEASLSFALPTRAAFRAQFTDNTDFKFDLDGSKATTGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDA-AAEGVLTAFVEENGGRTIENTIVTGEAAFFPQGLTHVQVNMGCTPATMIAALGSDDFGVQTITTTALKGLAGADGLGEG-LAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGLPY 242
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA) HSP 1 Score: 139 bits (350), Expect = 5.040e-38 Identity = 83/191 (43.46%), Postives = 111/191 (58.12%), Query Frame = 1
Query: 73 RQQF-DSEDFVFDLQGAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTT---QGIAM---LPEGTIQAALALGSDEAYAIIAGLPEGVVQGEKECLKRCGL 624
R QF D+ DF FDL G+ G+ + + +P L+GE V+ + +EPCG+NLPH HPRA E Y++ + ++ V AFVEEN GR I N + G+ A P GL H NMGC+PAT +AA S D GV T TT +G+A L EG + AAL + D+ +I G P+G G EC +RCGL
Sbjct: 1 RAQFTDNTDFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDA-AAEGVLTAFVEENGGRTIENTVVAGEAAFFPQGLTHMQVNMGCTPATMIAALGSDDFGVQTITTTALEGLAGAEGLGEG-LAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGL 189
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A0G4EJ88_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC) HSP 1 Score: 139 bits (351), Expect = 9.960e-37 Identity = 85/204 (41.67%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 34 NDKGDVDVP--RLDFRQQFD-SEDFVFDLQGAEPEVE--GEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIAMLPEGTIQAALALGSDEAYAIIAGLPEGVVQG--EKECLKRCGL 624
++ G+ DVP R FR QFD S DF+FD A E + G+ G V A++ P LSG G+S+ LVD+ PC +N PH HPRA E YIIK S F EEN GR++ ND+ EG A P L+H+ N C PA F+A +S D GV T Q LP+ + AL + E + LP G G +EC ++CGL
Sbjct: 121 DENGEPDVPLSRRAFRNQFDESSDFIFDFNTARAEADTNGQGGAVTGASVSQWPALSGHGLSHTLVDLAPCSINTPHVHPRATEIIYIIKGRVSVG----FAEENGGRIVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIA-QAFFGLPDDVLATALGVDEYEVAVLREELPAGPALGLQREECRRKCGL 319
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A835Z488_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z488_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.370e-36 Identity = 81/195 (41.54%), Postives = 113/195 (57.95%), Query Frame = 1
Query: 61 RLDFRQQF-DSEDFVFDLQGAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTT---QGIAM---LPEGTIQAALALGSDEAYAIIAGLPEGVVQGEKECLKRCGL 624
R FR QF ++EDF F++ ++ G+ + + +P L+GE V+ + ++PCG+NLPH HPRA E Y+I + + V AFVEEN GR I N I G+ A P GL H NMGC+PAT +AA S D GV T T+ +G+A L EG + AAL + D+ ++ G P+G G EC +RCGL
Sbjct: 49 RAAFRAQFVNNEDFTFNIDASKATTGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLQPCGINLPHVHPRATEILYVIDAPAE-GVLTAFVEENGGRTIENTIVTGEAAFFPQGLTHVQVNMGCAPATMIAALGSDDFGVQTITSAALKGLAAAEGLGEG-LAAALGIAQDQLALLVGGFPDGPAIGAAECRQRCGL 241
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A507FDZ0_9FUNG (Cupin type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG) HSP 1 Score: 136 bits (343), Expect = 2.770e-36 Identity = 78/210 (37.14%), Postives = 119/210 (56.67%), Query Frame = 1
Query: 1 AAGAPSRSLRLNDKGDVDVPRLDFRQQFDSEDFVFDLQGAEPEVE-GEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIAMLPEGTIQAALALGSD-EAYAIIAGLPEGVVQGEKECLKRCGL 624
A A S ++ D + +QF+ EDF+ DL E G+ G++ NLG++P L+ +G++ L+++ PCG NLPH HPRA+E Y+I+ +V+ F+EEN ++I+ND+ +GQ +P G +H+ N+GC A +AA ++ DPG LT Q LP+G I A+L D E A+ LP G +ECL+RCG
Sbjct: 18 AQSASPPSSTTSEPFDYSKTEVQRMKQFNHEDFITDLLHNPKSTEVGKGGSLAKMNLGSMPALARQGLAMVLINLNPCGANLPHVHPRASEAIYVIQG----NVQVGFIEENGAKVIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFF-KLPDGAIAASLGGTLDPEIRALNGSLPMNPAPGVEECLRRCGF 222
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA) HSP 1 Score: 129 bits (325), Expect = 4.600e-34 Identity = 81/198 (40.91%), Postives = 106/198 (53.54%), Query Frame = 1
Query: 55 VPRLDFRQQFDSEDFVFDLQ----GAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIAMLPEGTIQAALALGSDEAYAIIA----GLPEGVVQGEKECLKRCGL 624
V L + FD+EDFVFD G + +G G+ + AN+ PV+ ++ I PCG+NLPH HPR E Y+I+ E + FV E SGR ++NDI Q P GL+H+ QNMGC PA F++ S DPG+L +A LPE I AA DE A +A GLP+ +G ECL RCGL
Sbjct: 13 VSALRYMDNFDAEDFVFDFSDFETGVRVDSDGNGGSSQPANINTFPVVQVANMAQTRFRIAPCGINLPHVHPRGTESAYMIEGELTVG----FVME-SGRTVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAA-AVAGLPEEAIAAAF----DEDEAFVAQMRMGLPKVPARGRAECLVRCGL 200
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A815GW40_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815GW40_9BILA) HSP 1 Score: 131 bits (329), Expect = 3.030e-33 Identity = 77/197 (39.09%), Postives = 108/197 (54.82%), Query Frame = 1
Query: 40 KGDVDVPRLDFRQQFDSEDFVFDLQGAEPEVE-GEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIAMLPEGTIQAALA-LGSDEAYAIIAGLPEGVVQGEKECLKRCGL 624
KG V+ L+ + S ++VFD + A+ V G G V AN N P+L ++ + +EPCG+NLPH HPRA E Y K + T F +EN G+ + + + EGQV++ P G +HF QNMGC A F+AAF DPG LT G LP + A+L + D+ + + LP+ G +ECL RCGL
Sbjct: 134 KGSVNEISLEEKLANMSSNYVFDFKNAQVGVSTGNGGRVVSANARNFPILINHKIAMTVGFLEPCGMNLPHVHPRATEINYAAKGDFQTG----FFQENGGKFVGHIVREGQVSVFPQGAIHFEQNMGCETAMFVAAFDHEDPGTLTIA-DGFFSLPTDILAASLGGISEDDVMRLGSNLPKNAGFGTEECLIRCGL 325
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A0L0FUE8_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUE8_9EUKA) HSP 1 Score: 129 bits (323), Expect = 7.940e-33 Identity = 77/185 (41.62%), Postives = 100/185 (54.05%), Query Frame = 1
Query: 70 FRQQFDSEDFVFDLQGAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSGRLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIAMLPEGTIQAALALGSDEAYAIIAGLPEGVVQGEKECLKRCGL 624
F FD+EDFV D E G GT + AN NVPV+ ++ I PCG+NLPH HPR E YII E + +V FV E GRLI+ND+ Q P GL+H+ QNM C PA F++ +S DPG+L +A LP ++A + + GLP G +G ECL+RCGL
Sbjct: 115 FLNNFDAEDFVIDFATQPLESTGLGGTSQPANRNNVPVIQASNMAQTRFRIAPCGINLPHVHPRGTESVYII--EGALTV--GFVTEG-GRLILNDVKTDQSTFFPQGLLHYQQNMACEPAGFISILNSSDPGLLVIPA-ALAELPSEALEATFDEDAAFVNQLRIGLPAGPARGRAECLRRCGL 293
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Match: A0A836CHA5_9STRA (RmlC-like cupin domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA5_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.020e-31 Identity = 81/198 (40.91%), Postives = 104/198 (52.53%), Query Frame = 1
Query: 61 RLDFRQQFDSEDFVFDLQGAEPEVEGEAGTVKVANLGNVPVLSGEGVSYALVDIEPCGLNLPHHHPRAAEFGYIIKSESSTSVRHAFVEENSG----RLIMNDIGEGQVALVPGGLVHFVQNMGCSPATFLAAFSSPDPGVLTTTTQGIA------MLPEGTIQAALALGSDEAYAIIAGLPEGVVQGEKECLKRCGL 624
R FR QF E+F FDL G + GE G+V+ +P L+GE V+ PCG+NLPH HPRA E +++ + + V AFVEEN R I N + GQ P GLVH NMGC+PAT +AA S D GV T TT IA L EGT AA + D+ ++ G P G +EC +RC +
Sbjct: 54 RAAFRAQFPPEEFKFDLAGLDVPP-GEGGSVQALGAAQLPSLTGEKVAM------PCGINLPHVHPRATEILFVVDA-APEGVLMAFVEENVAMQGPRAITNTVTTGQATFFPQGLVHMQVNMGCTPATMIAALGSDDFGVQTITTTAIAGLAYDENLKEGTA-AAFGISQDQLIHLVEGFPGNPAAGAEECRQRCNI 242 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1077.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1077.652.1 >prot_S-latissima_F_contig1077.652.1 ID=prot_S-latissima_F_contig1077.652.1|Name=mRNA_S-latissima_F_contig1077.652.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=211bp AAGAPSRSLRLNDKGDVDVPRLDFRQQFDSEDFVFDLQGAEPEVEGEAGTback to top mRNA from alignment at S-latissima_F_contig1077:121973..122902+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1077.652.1 ID=mRNA_S-latissima_F_contig1077.652.1|Name=mRNA_S-latissima_F_contig1077.652.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=930bp|location=Sequence derived from alignment at S-latissima_F_contig1077:121973..122902+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1077:121973..122902+ >mRNA_S-latissima_F_contig1077.652.1 ID=mRNA_S-latissima_F_contig1077.652.1|Name=mRNA_S-latissima_F_contig1077.652.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1266bp|location=Sequence derived from alignment at S-latissima_F_contig1077:121973..122902+ (Saccharina latissima SLPER63f female)back to top |