mRNA_S-latissima_F_contig1076.638.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1076.638.1
Unique NamemRNA_S-latissima_F_contig1076.638.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1076.638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1076contigS-latissima_F_contig1076:40275..40617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.4602478-CDS-S-latissima_F_contig1076:40274..406161622815456.4602478-CDS-S-latissima_F_contig1076:40274..40616Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 40275..40616 +
1693924893.127101-CDS-S-latissima_F_contig1076:40274..406161693924893.127101-CDS-S-latissima_F_contig1076:40274..40616Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 40275..40616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1076.638.1prot_S-latissima_F_contig1076.638.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1076 40275..40616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1076.638.1

>prot_S-latissima_F_contig1076.638.1 ID=prot_S-latissima_F_contig1076.638.1|Name=mRNA_S-latissima_F_contig1076.638.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=114bp
AGVDGIPAAVDEKARKVLGLPQARSSLGGGGGGSGVPSAPASGGSGRASA
PFPRRASNKTPPALPPPQPKHGRNHLENPDFSSSLSHAGRAGLPSAAAAA
AGGSGTDLAVSETA
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mRNA from alignment at S-latissima_F_contig1076:40275..40617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1076.638.1 ID=mRNA_S-latissima_F_contig1076.638.1|Name=mRNA_S-latissima_F_contig1076.638.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=343bp|location=Sequence derived from alignment at S-latissima_F_contig1076:40275..40617+ (Saccharina latissima SLPER63f female)
GCCGGTGTCGATGGTATTCCTGCCGCGGTGGACGAAAAGGCCCGTAAGGT
GCTCGGGCTCCCCCAGGCACGAAGCAGCTTGGGCGGCGGCGGCGGTGGCA
GCGGCGTCCCCTCGGCCCCCGCTTCCGGCGGCAGCGGCCGTGCTTCGGCT
CCCTTCCCGAGAAGAGCGTCCAACAAGACCCCTCCCGCGCTGCCGCCCCC
CCAGCCGAAGCACGGGCGGAATCACTTGGAAAATCCTGACTTTTCGTCGT
CGTTGTCTCACGCGGGGAGAGCGGGGTTGCCATCGGCGGCGGCGGCGGCG
GCGGGGGGATCGGGGACGGATTTGGCGGTTTCGGAAACAGCGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1076:40275..40617+

>mRNA_S-latissima_F_contig1076.638.1 ID=mRNA_S-latissima_F_contig1076.638.1|Name=mRNA_S-latissima_F_contig1076.638.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=684bp|location=Sequence derived from alignment at S-latissima_F_contig1076:40275..40617+ (Saccharina latissima SLPER63f female)
GCCGGTGTCGATGGTATTCCTGCCGCGGTGGACGAAAAGGCCCGTAAGGT
GCTCGGGCTCCCCCAGGCACGAAGCAGCTTGGGCGGCGGCGGCGGTGGCA
GCGGCGTCCCCTCGGCCCCCGCTTCCGGCGGCAGCGGCCGTGCTTCGGCT
CCCTTCCCGAGAAGAGCGTCCAACAAGACCCCTCCCGCGCTGCCGCCCCC
CCAGCCGAAGCACGGGCGGAATCACTTGGAAAATCCTGACTTTTCGTCGT
CGTTGTCTCACGCGGGGAGAGCGGGGTTGCCATCGGCGGCGGCGGCGGCG
GCGGGGGGATCGGGGACGGATTTGGCGGTTTCGGAAACAGCGGCCGGTGT
CGATGGTATTCCTGCCGCGGTGGACGAAAAGGCCCGTAAGGTGCTCGGGC
TCCCCCAGGCACGAAGCAGCTTGGGCGGCGGCGGCGGTGGCAGCGGCGTC
CCCTCGGCCCCCGCTTCCGGCGGCAGCGGCCGTGCTTCGGCTCCCTTCCC
GAGAAGAGCGTCCAACAAGACCCCTCCCGCGCTGCCGCCCCCCCAGCCGA
AGCACGGGCGGAATCACTTGGAAAATCCTGACTTTTCGTCGTCGTTGTCT
CACGCGGGGAGAGCGGGGTTGCCATCGGCGGCGGCGGCGGCGGCGGGGGG
ATCGGGGACGGATTTGGCGGTTTCGGAAACAGCG
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