mRNA_S-latissima_F_contig1063.541.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1063.541.1
Unique NamemRNA_S-latissima_F_contig1063.541.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1063.541.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.430e-15
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    4 NEVRSLTIQLEEGKKEARWMRERNQELERVVEALRKTIMRQADLSSQRVEQQG 162
            ++VRSL++ +EE KKE+RW+RERNQELERVVEALRKTIMRQA+LSSQR +QQG
Sbjct:  423 HKVRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQG 475
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BLAST of mRNA_S-latissima_F_contig1063.541.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.510e-15
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    4 NEVRSLTIQLEEGKKEARWMRERNQELERVVEALRKTIMRQADLSSQRVEQQG 162
            ++VRSL++ +EE KKE+RW+RERNQELERVVEALRKTIMRQA+LSSQR +QQG
Sbjct:  374 HKVRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQG 426
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BLAST of mRNA_S-latissima_F_contig1063.541.1 vs. uniprot
Match: A0A836CGJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.490e-10
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 NEVRSLTIQLEEGKKEARWMRERNQELERVVEALRKTIMRQADLSSQR 147
            +++RSL + LEE +KEARW+R+RN E ERV+EALRKTIMRQA+L+SQR
Sbjct:  307 DKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQR 354
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BLAST of mRNA_S-latissima_F_contig1063.541.1 vs. uniprot
Match: A0A835YKF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.640e-10
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   10 VRSLTIQLEEGKKEARWMRERNQELERVVEALRKTIMRQADLSSQR 147
            +RSL + LEE +KEA+W+R+R  E ER++EALRKTIMRQA+LSSQR
Sbjct:  239 IRSLAVLLEESRKEAKWLRDRTSESERIIEALRKTIMRQAELSSQR 284
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1063.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTA0_ECTSI4.430e-1577.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMF9_9PHAE4.510e-1577.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGJ9_9STRA2.490e-1068.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKF1_9STRA4.640e-1067.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1063contigS-latissima_F_contig1063:145506..147016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FTA0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BZB3@1,2SGA8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.1060958-CDS-S-latissima_F_contig1063:145505..1456651622815441.1060958-CDS-S-latissima_F_contig1063:145505..145665Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1063 145506..145665 +
1693924885.4816358-CDS-S-latissima_F_contig1063:145505..1456651693924885.4816358-CDS-S-latissima_F_contig1063:145505..145665Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1063 145506..145665 +
1622815441.118062-CDS-S-latissima_F_contig1063:146981..1470161622815441.118062-CDS-S-latissima_F_contig1063:146981..147016Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1063 146982..147016 +
1693924885.499541-CDS-S-latissima_F_contig1063:146981..1470161693924885.499541-CDS-S-latissima_F_contig1063:146981..147016Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1063 146982..147016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1063.541.1prot_S-latissima_F_contig1063.541.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1063 145506..147016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1063.541.1

>prot_S-latissima_F_contig1063.541.1 ID=prot_S-latissima_F_contig1063.541.1|Name=mRNA_S-latissima_F_contig1063.541.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=65bp
KNEVRSLTIQLEEGKKEARWMRERNQELERVVEALRKTIMRQADLSSQRV
EQQGAAQRHSNSARE
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mRNA from alignment at S-latissima_F_contig1063:145506..147016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1063.541.1 ID=mRNA_S-latissima_F_contig1063.541.1|Name=mRNA_S-latissima_F_contig1063.541.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1511bp|location=Sequence derived from alignment at S-latissima_F_contig1063:145506..147016+ (Saccharina latissima SLPER63f female)
AAGAATGAGGTGCGGTCTCTGACTATTCAGCTGGAGGAAGGGAAGAAGGA
GGCGCGCTGGATGAGGGAGAGGAACCAGGAGTTGGAGAGGGTGGTCGAGG
CGTTGCGCAAGACGATCATGCGCCAGGCGGATCTCTCCAGCCAGAGGGTC
GAGCAGCAGGGTGAGAGTTCTGCGTACTACCTGTTGTGTACTGGTAAAGT
TTTGCCCTGGAAGTTTGGGTGTTTTTTACAGGTGTGGTGGCGGGGAGGAG
GGAGAGGAAGGAAGGGCGGTGGTGTCGGGCGGGCGGGCGGGCGGTTGGTG
GGGTGGGTGGTGGTGTTGGGTGGTGGTGGGAGGAGGGTTGGTGGTGGTGG
CAGAGGGGTGGGTGGTGGTGTGGTGGTAGTTGGTGGTGTGGTGGTGGTGG
TGTGGTGGGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGTGTTGTTGGTGT
GGTCTACTGCTGCTGCTAACGCTGCTGATTCTGGCTGGCTCCGCTACTTC
TCCTGTTGGTGGTGGTGGGTGGTGTTGTGTGGTGGTGGTAGTGGTGGTGG
TGGTGGGGTAGTGGTGGTGGTTGGCGGGGGGGGTGGGTTAGTAGTGATGG
TGGTGGTAGTGAGTTGTAGTTCCTGGTTATGAGTGGGAGGCGGGGGGGGG
GGGTGGCGGAGGTGGTAGCGGTGGGGGTGGGGAAGGTGGGGGGCGTAGCG
GTGATGGGAGAAAGGTGGGTGGTGGCGGTGTCGATGGTGATAATGTTGCG
GTACGGGGGGGGGGGGGTGGCATGAGTGTTCGCGCTCCGTTTATTTATTA
TCTACCAGGGTATGTACATGGCTCCCATCTACTGTAGAAGCAGAGGGATA
TTTATATGTTTATGTTGTTATCTTTGTTGTACTTGATGTTTCGGTTCGAT
CGTGACACAATATCAGGTGCGGGGCCTTTATTCCAACAGGCGTTCTCCTT
GTTTTTCAGCCATTGGCGATATGTCCCCACAGCCTCGTTATTTTTCTTCT
TTCACTCACTCTGTACCCCCGTTTCGTATTAGCAGCCTATGTCCCCTTCT
CTCGTGACCCCCCCCCCTCCCCCCTCCTCCCCCTTCTACCCCCCCCCCCC
CCCCCGTGTTCCCCCACTCTCTGTCCGCACCCCCTCGACCCCCCTCTTTC
AAAATATCCCTCCCCTCCCCCCCACCCCTCAACGTGCTCCGTCCTGACAT
TGTAGGGATGCGAGGGTCTATGGTCATACGACTACGGCCATGCACGATAT
GAGTAAACCCAGGTACCCCCTCCCCCCCCCCCCCTATGGTCCATACGACT
ACGGCCATGCATGAAAATTAAGTACCCCCCCCCCCCCCCCCCCCCCCTCC
GGGCCTTCCCGGGTGCTATGTCTCGAAAGGGATGCGTGGTTAATGGTTAA
ATGGCTTATAAGGCGAGCAACAAATGAGTACCCCTCCCCCGGCCGCGGCC
CGCCCGCGCTCGTTTGTTTTTGTCAGGTGCGGCGCAGCGGCACTCCAACT
CCGCCAGGGAG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1063:145506..147016+

>mRNA_S-latissima_F_contig1063.541.1 ID=mRNA_S-latissima_F_contig1063.541.1|Name=mRNA_S-latissima_F_contig1063.541.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=390bp|location=Sequence derived from alignment at S-latissima_F_contig1063:145506..147016+ (Saccharina latissima SLPER63f female)
AAGAATGAGGTGCGGTCTCTGACTATTCAGCTGGAGGAAGGGAAGAAGGA
GGCGCGCTGGATGAGGGAGAGGAACCAGGAGTTGGAGAGGGTGGTCGAGG
CGTTGCGCAAGACGATCATGCGCCAGGCGGATCTCTCCAGCCAGAGGGTC
GAGCAGCAGGAAGAATGAGGTGCGGTCTCTGACTATTCAGCTGGAGGAAG
GGAAGAAGGAGGCGCGCTGGATGAGGGAGAGGAACCAGGAGTTGGAGAGG
GTGGTCGAGGCGTTGCGCAAGACGATCATGCGCCAGGCGGATCTCTCCAG
CCAGAGGGTCGAGCAGCAGGGTGCGGCGCAGCGGCACTCCAACTCCGCCA
GGGAGGTGCGGCGCAGCGGCACTCCAACTCCGCCAGGGAG
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